genome.fa.s18.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  96  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32669423--32669491	19	4.3	17	70	21	51	49	1	2	46	1.25
32669738--32669767	16	1.9	16	93	6	53	40	0	3	56	1.16
32671049--32671081	2	16.5	2	93	0	57	51	0	3	45	1.16
32671053--32671110	6	9.7	6	83	7	55	51	1	8	37	1.43
32685164--32685397	35	7.0	33	82	8	285	39	17	23	19	1.92
32685154--32685387	67	3.5	67	87	3	303	40	17	23	19	1.91
32685164--32685396	102	2.3	101	91	2	371	39	17	23	19	1.92
32685652--32685696	20	2.1	22	84	12	58	13	11	8	66	1.44
32688410--32688464	27	2.0	27	96	0	101	27	25	9	38	1.86
32712598--32712639	15	3.1	14	86	13	61	35	19	0	45	1.50
32716442--32716481	20	2.0	20	100	0	80	30	10	10	50	1.69
32727191--32727226	18	2.2	18	85	14	51	41	5	2	50	1.40
32727898--32727948	17	2.9	17	83	11	59	33	0	1	64	1.05
32729169--32729201	17	1.9	17	100	0	66	30	3	30	36	1.73
32729581--32729642	24	2.7	23	80	9	72	33	1	3	61	1.22
32734852--32735048	80	2.4	82	79	6	204	37	17	13	30	1.89
32751317--32751369	26	2.0	26	100	0	106	41	15	11	32	1.82
32755324--32755381	21	2.8	21	79	10	64	25	17	18	37	1.93
32758908--32759004	7	14.0	7	74	10	83	49	9	1	40	1.42
32758928--32759002	21	3.6	21	88	0	105	50	8	1	40	1.40
32759696--32759727	15	2.1	16	88	11	50	34	12	9	43	1.75
32759696--32759741	14	3.2	15	77	20	53	36	10	8	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32759710--32759776	34	1.9	35	90	3	109	34	8	10	46	1.70
32760813--32760842	9	3.3	9	90	0	51	30	0	13	56	1.37
32761379--32761405	2	13.5	2	100	0	54	0	51	0	48	1.00
32765046--32765116	29	2.4	30	88	2	99	60	4	2	32	1.30
32768668--32768697	14	2.1	14	93	0	51	43	0	10	46	1.37
32776095--32776126	16	1.9	17	93	6	57	50	0	9	40	1.35
32776390--32776428	12	3.3	12	83	16	55	41	0	0	58	0.98
32781425--32781455	15	2.1	15	93	0	53	70	19	6	3	1.22
32782780--32782829	22	2.2	23	89	3	75	38	30	10	22	1.86
32785339--32785395	17	3.4	17	72	18	55	43	0	0	56	0.99
32785329--32785394	34	1.9	34	84	6	89	40	0	0	59	0.98
32785556--32785601	24	2.0	24	95	4	85	41	26	4	28	1.74
32788177--32788202	6	4.3	6	100	0	52	50	0	15	34	1.45
32788168--32788202	18	1.9	18	88	0	52	51	2	11	34	1.53
32790764--32790800	16	2.4	16	86	8	51	48	8	8	35	1.62
32792825--32792889	27	2.4	27	90	10	98	23	27	21	27	1.99
32793053--32793382	101	3.1	101	85	7	378	53	16	2	27	1.56
32793445--32793562	38	3.2	37	64	19	93	55	15	0	28	1.46
32793459--32793569	31	3.3	31	64	22	78	57	14	0	27	1.37
32793440--32793576	72	1.9	72	96	0	256	54	15	0	29	1.47
32793440--32793547	34	3.1	34	65	13	83	52	16	0	29	1.50
32793466--32793580	38	3.1	38	68	14	123	55	15	0	28	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32793579--32793636	27	2.1	27	81	6	64	31	32	22	13	1.93
32793708--32793749	16	2.5	17	84	7	59	59	4	0	35	1.19
32794236--32794290	24	2.3	24	84	9	76	38	1	1	58	1.20
32794236--32794290	25	2.3	23	82	14	67	38	1	1	58	1.20
32794449--32794485	7	5.3	7	100	0	74	0	59	13	27	1.35
32794785--32794897	57	2.0	57	96	0	208	36	0	10	52	1.42
32794918--32795093	72	2.5	72	92	2	286	30	0	15	53	1.46
32794975--32795082	34	3.1	33	67	15	90	28	0	16	54	1.42
32795058--32795361	103	3.0	96	79	13	351	28	0	15	55	1.47
32795057--32795392	102	3.3	99	81	13	380	27	0	15	55	1.46
32797438--32797553	33	3.5	33	80	6	119	18	43	8	28	1.80
32797762--32798054	77	3.9	76	88	6	418	26	6	10	56	1.57
32797762--32798054	152	1.9	151	90	4	466	26	6	10	56	1.57
32797798--32798108	152	2.0	150	79	9	328	29	6	10	53	1.61
32801166--32801222	27	2.1	27	90	0	87	28	24	28	19	1.98
32803509--32803551	22	1.9	23	85	4	61	48	0	0	51	1.00
32805805--32805926	60	2.0	60	96	0	226	29	20	17	32	1.95
32808641--32808684	16	2.8	16	82	3	54	54	2	4	38	1.33
32811201--32811275	34	2.2	35	83	11	93	20	6	8	65	1.42
32824003--32824043	20	2.0	21	90	4	66	43	0	2	53	1.13
32824336--32824363	9	3.1	9	100	0	56	64	0	0	35	0.94
32832793--32832844	25	2.1	25	100	0	104	61	11	7	19	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32833202--32833231	11	2.6	11	94	5	51	36	3	0	60	1.14
32833178--32833252	32	2.3	33	86	8	102	34	4	0	61	1.15
32834647--32834692	5	9.2	5	81	13	51	23	0	2	73	0.94
32835146--32835179	14	2.4	14	85	0	50	67	5	2	23	1.26
32835582--32835626	22	2.0	22	84	16	58	53	8	6	31	1.58
32836105--32836168	20	3.2	19	73	20	51	76	1	18	3	1.00
32836721--32836779	29	2.0	29	86	0	82	33	30	8	27	1.86
32840399--32840448	25	2.0	25	100	0	100	56	0	12	32	1.36
32842349--32842435	40	2.2	40	87	6	124	12	24	17	45	1.82
32843784--32843821	16	2.5	15	83	8	51	68	0	0	31	0.90
32846395--32846483	5	17.8	5	98	0	115	51	20	0	28	1.47
32847561--32847585	5	5.0	5	100	0	50	80	0	0	20	0.72
32851035--32851093	20	2.9	21	85	9	70	40	1	1	55	1.20
32851362--32851410	22	2.3	20	86	13	71	73	4	2	20	1.10
32853000--32853042	17	2.6	16	78	10	50	30	6	0	62	1.21
32859379--32859407	6	4.8	6	100	0	58	51	13	0	34	1.42
32865700--32865799	3	34.0	3	72	6	71	28	6	1	65	1.23
32866042--32866174	53	2.6	50	80	11	146	39	9	0	49	1.41
32867790--32868040	110	2.3	110	86	5	339	38	15	14	32	1.87
32868331--32868382	20	2.5	21	81	9	63	40	1	1	55	1.22
32868331--32868374	21	2.1	22	87	8	65	40	2	2	54	1.25
32868331--32868389	20	3.0	19	81	13	59	38	1	1	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32868662--32868706	19	2.4	19	77	7	56	73	4	2	20	1.11
32869949--32870077	63	2.0	63	93	0	222	35	18	21	24	1.95
32877787--32877966	72	2.5	71	82	4	220	26	5	12	56	1.57
32879992--32880016	13	1.9	13	100	0	50	40	28	8	24	1.83
32880655--32880697	23	1.9	22	90	4	68	46	6	0	46	1.30
32881058--32881100	17	2.5	17	76	0	50	48	2	0	48	1.14
32886294--32886354	3	20.0	3	86	3	86	60	0	3	36	1.13
32892067--32892094	5	5.6	5	100	0	56	42	57	0	0	0.99
32892197--32892246	9	5.6	9	85	0	73	24	4	22	50	1.66
32892197--32892245	18	2.7	18	93	0	89	24	4	22	48	1.67
32894028--32894081	25	2.1	26	89	3	83	37	12	14	35	1.85
32897329--32897520	78	2.5	78	80	6	205	38	4	17	40	1.69
32897855--32898049	41	4.7	41	79	2	185	30	16	26	26	1.97
32898214--32898327	34	3.2	36	75	8	108	33	7	17	42	1.76
32900825--32900936	43	2.6	43	80	5	102	26	16	27	29	1.97
32901732--32902299	24	23.7	23	75	9	467	29	13	17	39	1.88
32901732--32902299	47	11.8	47	78	8	520	29	13	17	39	1.88
32901732--32902299	70	7.9	72	78	11	283	29	13	17	39	1.88
32901715--32902285	191	3.0	192	89	3	846	29	13	17	39	1.88
32901944--32902253	70	4.4	70	85	6	381	27	12	18	41	1.87
32906048--32906086	18	2.2	18	100	0	78	48	0	5	46	1.24
32907189--32907380	78	2.5	77	81	6	212	38	4	17	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32910668--32910864	41	4.8	41	78	5	168	30	19	25	24	1.98
32910665--32910816	83	1.8	82	83	9	202	30	19	26	23	1.98
32911033--32911104	34	2.1	34	84	5	92	29	11	22	37	1.88
32917970--32918020	26	2.0	26	84	0	66	60	3	5	29	1.38
32918157--32918211	22	2.5	22	76	8	58	58	3	9	29	1.46
32925491--32925516	12	2.2	12	100	0	52	23	0	0	76	0.78
32929619--32929657	19	2.1	19	85	4	53	23	12	2	61	1.43
32932324--32932376	28	1.9	27	84	3	70	64	1	3	30	1.22
32932295--32932398	51	2.1	50	82	8	122	63	1	4	29	1.26
32932354--32932397	23	2.0	21	86	8	61	63	2	4	29	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208