genome.fa.s18.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  196  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60867580--60867622	19	2.2	20	84	12	54	74	2	20	2	1.04
60867900--60868198	97	2.9	100	83	7	361	25	17	9	48	1.76
60867997--60868198	108	1.9	108	89	0	314	25	16	9	49	1.75
60869084--60870342	46	27.4	46	89	0	1797	26	15	27	30	1.96
60877306--60877438	45	3.0	44	79	9	148	24	17	27	30	1.97
60879768--60879801	14	2.4	14	95	5	59	32	5	20	41	1.76
60883499--60883532	16	2.1	16	88	0	50	79	5	14	0	0.91
60883832--60884130	97	2.9	100	85	7	397	26	16	9	48	1.76
60885014--60885814	46	17.4	46	89	0	1111	26	15	26	31	1.95
60887720--60887744	4	6.2	4	100	0	50	28	0	0	72	0.86
60887775--60887823	18	2.7	19	84	9	66	16	4	6	73	1.19
60890305--60890424	62	1.9	62	82	0	150	20	27	20	32	1.97
60891531--60891604	34	2.2	34	95	0	130	45	13	18	21	1.84
60892013--60892048	17	2.1	17	94	0	63	41	11	22	25	1.86
60893496--60893582	45	1.9	45	95	0	156	34	6	19	39	1.79
60893547--60893620	36	2.1	35	85	9	98	31	6	22	39	1.80
60898045--60898161	49	2.4	49	82	0	144	33	13	19	33	1.91
60898078--60898198	49	2.5	49	83	2	136	36	14	18	30	1.91
60898265--60898408	34	4.3	33	73	12	114	41	13	12	31	1.82
60902291--60902338	24	2.0	24	95	0	87	58	10	2	29	1.43
60908596--60908671	11	6.9	11	82	10	84	25	31	0	43	1.55
60910500--60910541	18	2.3	18	87	0	57	19	28	7	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60910792--60910831	21	1.9	21	84	0	53	32	40	17	10	1.83
60910949--60911027	34	2.2	36	93	4	135	41	3	3	50	1.38
60911024--60911337	58	5.4	57	69	20	220	42	4	7	45	1.51
60911010--60911337	116	2.8	116	94	0	575	42	4	7	46	1.52
60914285--60914702	126	3.3	126	87	3	608	27	19	16	35	1.94
60914701--60915067	102	3.8	98	76	16	329	37	17	3	41	1.66
60914739--60915038	95	3.2	93	80	13	326	37	19	3	39	1.69
60916272--60916344	29	2.4	30	76	14	80	21	10	9	57	1.61
60917258--60917297	14	2.9	14	84	0	53	32	7	17	42	1.77
60917281--60917320	20	2.0	20	90	0	62	27	10	12	50	1.72
60917266--60917332	34	1.9	35	90	3	109	31	8	13	46	1.74
60917419--60917457	20	2.0	20	94	0	69	48	2	0	48	1.15
60932724--60932812	12	6.7	13	71	18	67	53	1	3	41	1.24
60932661--60932822	82	2.0	79	89	3	243	54	2	3	38	1.31
60932675--60932822	30	5.3	30	75	13	131	54	2	4	39	1.34
60932685--60932809	42	3.0	42	69	17	116	54	3	3	39	1.33
60935092--60935144	15	3.3	16	73	17	56	37	0	7	54	1.29
60935234--60935274	19	2.1	20	90	4	66	31	0	0	68	0.90
60936279--60936333	20	2.9	19	72	17	60	36	1	1	60	1.18
60937040--60937149	50	2.1	52	83	8	136	28	37	15	19	1.92
60938133--60938195	3	21.0	3	100	0	126	33	0	0	66	0.92
60940020--60940180	85	1.9	86	87	3	236	22	26	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60940020--60940393	43	8.8	42	83	5	222	22	28	22	26	1.99
60940016--60940374	86	4.2	85	82	6	338	23	28	21	25	1.99
60940144--60940374	84	2.7	86	87	4	317	24	30	20	24	1.99
60940105--60940374	43	6.3	43	84	3	307	23	30	20	25	1.99
60940507--60940536	14	2.1	14	100	0	60	53	33	0	13	1.40
60940849--60940899	21	2.4	21	86	0	66	5	41	17	35	1.74
60940786--60940965	87	2.1	87	87	4	256	12	30	18	38	1.88
60942302--60942336	18	2.0	17	88	5	52	71	0	0	28	0.86
60946849--60946888	14	2.9	14	96	0	71	40	0	5	55	1.22
60948404--60948434	16	1.9	16	93	0	53	32	6	25	35	1.82
60949022--60949063	14	2.8	15	85	7	50	50	4	4	40	1.45
60949404--60949457	20	2.7	20	76	0	54	40	38	3	16	1.66
60948837--60950637	793	2.2	797	89	4	2745	37	16	9	35	1.82
60951110--60951341	113	2.1	113	94	0	410	28	22	23	25	1.99
60951321--60951468	40	3.7	40	76	8	124	17	20	25	37	1.94
60952200--60952252	21	2.5	21	96	0	97	30	35	9	24	1.87
60953747--60953788	19	2.3	18	88	8	66	57	0	4	38	1.20
60953788--60953847	25	2.4	23	84	15	68	66	3	0	30	1.07
60953914--60954076	80	2.0	80	96	0	299	38	12	15	34	1.85
60955639--60955678	17	2.4	17	82	0	53	55	2	12	30	1.50
60960758--60960787	3	10.0	3	100	0	60	0	33	0	66	0.92
60972483--60972516	16	2.1	16	88	0	50	17	11	17	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60976763--60976814	22	2.4	22	90	0	86	21	28	15	34	1.94
60978943--60978997	9	6.1	9	86	0	83	30	10	12	45	1.77
60978943--60978997	18	3.1	18	91	0	92	30	10	12	45	1.77
60979167--60979191	11	2.3	11	100	0	50	8	0	0	92	0.40
60983415--60983460	24	1.9	24	86	0	65	45	4	2	47	1.34
60983653--60983718	13	5.1	13	75	0	69	34	24	9	31	1.87
60996732--60996783	26	2.0	26	100	0	104	42	23	15	19	1.89
60999193--60999224	13	2.3	15	84	15	50	53	0	3	43	1.16
60999637--60999671	5	6.8	5	93	6	61	17	0	2	80	0.84
61003812--61003923	44	2.7	41	74	8	107	31	21	20	26	1.98
61003711--61003967	129	2.0	128	82	4	311	30	21	17	30	1.96
61018796--61018899	54	1.9	54	82	3	129	41	0	5	51	1.32
61020027--61020058	16	2.0	16	100	0	64	31	25	0	43	1.55
61023467--61023519	23	2.4	22	79	14	56	35	1	0	62	1.06
61027283--61027324	21	2.0	21	95	0	75	50	4	16	28	1.66
61027988--61028155	44	3.6	43	78	13	156	50	11	23	14	1.75
61028605--61028685	42	1.9	42	94	0	144	34	6	12	46	1.66
61029455--61029496	3	14.0	3	100	0	84	66	0	0	33	0.92
61029611--61029652	3	14.0	3	84	0	57	59	2	4	33	1.31
61031229--61031326	44	2.2	45	81	5	119	31	23	15	29	1.95
61031260--61031424	44	3.8	44	79	5	156	30	21	18	29	1.97
61031686--61031878	103	1.9	103	83	2	253	26	23	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61031785--61032656	88	9.9	88	87	0	1152	30	22	17	29	1.97
61032279--61032413	44	3.1	44	65	16	107	32	24	14	28	1.95
61032214--61032356	43	3.3	43	66	11	101	27	23	17	31	1.97
61032494--61032638	44	3.3	44	66	11	107	31	19	20	28	1.97
61033458--61033673	104	2.0	106	83	4	265	48	8	16	26	1.75
61035173--61035225	11	5.0	10	78	17	54	0	22	0	77	0.77
61035181--61035210	14	2.1	14	93	0	51	0	23	0	76	0.78
61035179--61035224	17	2.7	17	83	9	58	0	21	0	78	0.76
61039286--61039365	23	3.5	23	91	5	119	13	6	41	38	1.70
61039928--61040729	132	6.1	132	93	0	1181	29	24	16	28	1.97
61045621--61045683	23	2.7	23	85	5	90	14	4	39	41	1.67
61047138--61047192	26	2.1	26	83	6	67	1	27	1	69	1.09
61047702--61047903	62	3.2	62	68	5	163	26	23	25	25	2.00
61047618--61047902	126	2.3	125	88	0	417	26	24	26	22	2.00
61049258--61049297	19	2.0	20	85	14	55	47	2	0	50	1.14
61049986--61050030	22	2.1	20	84	12	54	82	8	4	4	0.94
61050482--61050506	13	1.9	13	100	0	50	16	0	12	72	1.13
61051217--61051293	3	25.3	3	77	7	66	29	7	1	61	1.32
61051217--61051280	27	2.4	27	86	0	92	29	9	1	59	1.38
61051308--61051336	13	2.3	13	94	5	51	17	0	13	68	1.20
61053012--61053067	27	2.1	27	82	0	67	39	5	14	41	1.68
61053429--61053468	19	2.0	20	85	14	55	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61056059--61056097	21	1.9	20	89	5	60	25	5	0	69	1.09
61056252--61056288	14	2.6	15	83	12	51	10	5	8	75	1.17
61057110--61057202	48	1.9	48	87	8	136	40	25	12	20	1.88
61059631--61059723	48	1.9	48	87	8	136	40	25	12	20	1.88
61062570--61062636	27	2.5	26	83	9	91	41	7	1	49	1.40
61062713--61062790	27	2.9	27	92	3	122	26	25	30	16	1.97
61062842--61062916	12	6.6	12	71	22	56	66	0	33	0	0.92
61062835--61062877	22	2.0	21	86	13	61	65	0	34	0	0.93
61062837--61062974	10	13.2	10	68	17	52	65	0	33	0	0.98
61062840--61063008	38	4.6	38	81	11	176	65	0	33	0	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208