genome.fa.s18.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  93  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31779209--31779345	30	4.6	30	75	13	113	37	6	21	34	1.80
31780098--31780137	18	2.1	19	86	9	55	55	0	2	42	1.13
31783399--31783432	14	2.4	14	100	0	68	55	0	5	38	1.24
31783692--31783756	31	2.1	31	100	0	130	49	3	20	27	1.64
31795077--31795130	27	2.0	27	96	0	99	40	31	7	20	1.80
31797231--31797322	42	2.2	42	82	7	116	20	20	36	21	1.95
31805834--31806039	102	2.0	105	80	4	231	26	23	28	21	1.99
31807609--31807675	20	3.3	20	72	12	64	35	19	32	11	1.88
31807593--31807831	40	5.9	40	79	5	180	35	18	26	19	1.95
31807593--31807831	80	3.0	80	78	4	205	35	18	26	19	1.95
31808310--31808372	25	2.5	25	87	5	83	57	15	20	6	1.61
31814183--31814246	33	2.0	33	84	6	87	26	20	28	25	1.99
31814291--31814473	43	4.3	43	81	4	203	31	28	15	23	1.96
31823473--31823524	24	2.2	25	89	6	81	78	9	5	5	1.07
31823948--31823989	9	4.6	9	87	3	57	88	4	7	0	0.64
31825366--31825666	44	6.9	43	67	5	129	28	20	24	27	1.99
31825395--31825622	44	5.2	44	68	6	149	28	20	24	27	1.99
31825303--31825666	130	2.8	129	92	1	575	27	20	24	27	1.99
31825629--31825816	45	4.2	45	66	9	112	26	20	24	29	1.99
31825593--31826227	136	4.7	136	94	0	1148	27	20	23	29	1.99
31825593--31826227	270	2.3	271	94	1	1137	27	20	23	29	1.99
31825660--31826165	46	11.2	46	66	11	220	26	20	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31826236--31826759	82	6.4	82	92	2	779	31	25	20	22	1.98
31832177--31832203	14	1.9	14	100	0	54	70	7	22	0	1.12
31832197--31832252	16	3.5	16	80	0	67	80	17	1	0	0.80
31832197--31832252	24	2.3	25	81	9	71	80	17	1	0	0.80
31832674--31832715	12	3.7	12	76	23	54	80	0	11	7	0.88
31832675--31832747	17	4.4	17	80	13	62	80	1	15	2	0.89
31832675--31832747	22	2.9	25	74	20	71	80	1	15	2	0.89
31832693--31832747	9	6.3	9	77	12	53	81	1	14	1	0.85
31832677--31832747	33	2.2	33	85	10	92	81	1	14	2	0.87
31832688--31832750	24	2.5	25	80	14	76	79	1	17	1	0.89
31833701--31833959	44	6.0	45	75	5	221	27	16	26	30	1.97
31833701--31833961	132	2.0	129	90	2	405	27	16	26	29	1.97
31834003--31834258	50	5.2	50	68	10	143	31	21	21	25	1.98
31833995--31834258	98	2.7	98	91	5	408	31	21	22	25	1.98
31834417--31834610	44	4.4	43	66	8	122	28	18	25	26	1.98
31834256--31834702	132	3.4	132	89	3	643	28	19	23	27	1.98
31834746--31835300	44	12.9	42	65	21	174	33	22	20	23	1.97
31834645--31835906	217	5.8	217	95	0	2174	32	21	21	24	1.98
31839799--31839844	17	2.8	16	90	6	65	45	0	6	47	1.28
31840295--31840381	41	2.1	41	97	0	165	37	18	16	27	1.92
31840769--31840831	32	2.0	32	96	0	117	25	26	22	25	2.00
31840801--31840882	41	2.0	41	87	0	119	29	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31840918--31840993	39	1.9	39	84	5	100	21	21	22	35	1.96
31841280--31841322	22	2.0	22	86	9	61	60	6	2	30	1.35
31841414--31841456	3	14.0	3	85	9	52	62	0	0	37	0.95
31847085--31847109	13	1.9	13	100	0	50	36	0	0	64	0.94
31847788--31847996	108	2.0	105	91	2	337	27	19	19	33	1.96
31851180--31851231	22	2.2	24	83	13	81	42	3	13	40	1.62
31851184--31851229	22	2.1	22	95	0	83	45	4	15	34	1.66
31853463--31853516	23	2.3	23	90	3	90	46	0	3	50	1.19
31867903--31867986	40	2.1	40	93	4	143	38	17	16	27	1.92
31868846--31868887	22	1.9	22	85	9	59	59	7	2	30	1.37
31874577--31874601	13	1.9	13	100	0	50	36	0	0	64	0.94
31875279--31875487	108	2.0	105	91	2	337	27	19	19	33	1.96
31878678--31878729	22	2.2	24	83	13	81	42	3	13	40	1.62
31878682--31878727	22	2.1	22	95	0	83	45	4	15	34	1.66
31880997--31881052	24	2.3	23	82	11	76	48	0	3	48	1.19
31882911--31882945	14	2.4	14	90	4	52	77	2	11	8	1.10
31885098--31885141	13	3.0	15	80	16	56	68	0	0	31	0.90
31886461--31886502	22	1.9	22	95	0	75	21	19	14	45	1.85
31887948--31887998	25	2.0	25	81	7	59	35	1	3	58	1.28
31888963--31888997	17	2.0	18	94	5	63	31	0	11	57	1.34
31891157--31891236	33	2.4	34	85	8	112	16	25	37	21	1.93
31894739--31894771	14	2.2	15	89	10	50	18	0	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31903283--31903353	33	2.2	32	80	9	81	21	19	36	22	1.95
31909884--31909947	13	4.9	13	81	7	76	29	6	25	39	1.80
31910319--31910823	255	2.0	255	95	0	904	38	17	14	28	1.90
31920266--31920322	24	2.4	24	81	0	69	22	7	8	61	1.50
31922083--31922143	30	2.0	31	87	3	88	37	0	42	19	1.52
31922192--31922228	9	4.1	9	92	0	65	29	10	13	45	1.77
31922814--31922869	29	1.9	29	96	0	103	60	7	8	23	1.51
31923839--31923896	3	19.3	3	100	0	116	34	32	0	32	1.58
31925699--31925751	22	2.4	22	81	12	65	69	1	5	22	1.19
31926259--31926445	94	2.0	93	94	3	331	21	31	13	33	1.92
31928591--31928651	29	2.1	29	84	0	77	47	1	8	42	1.43
31928606--31928661	29	1.9	29	92	0	94	42	1	8	46	1.45
31931627--31931652	2	13.0	2	100	0	52	50	0	0	50	1.00
31945612--31945694	41	2.0	41	100	0	166	53	20	12	14	1.73
31950339--31950369	3	10.3	3	100	0	62	32	0	0	67	0.91
31959743--31959778	6	6.0	6	100	0	72	66	0	0	33	0.92
31964085--31964249	89	1.8	90	83	6	219	30	5	23	40	1.77
31964190--31964472	90	3.3	87	74	13	253	30	6	26	37	1.81
31973760--31973831	17	4.1	17	73	16	58	55	4	2	37	1.34
31974368--31974454	30	2.7	31	86	12	115	40	2	0	57	1.11
31977583--31977746	90	1.8	90	84	5	224	31	4	21	42	1.73
31978939--31978993	18	3.0	18	84	10	67	36	0	7	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31985893--31985982	34	2.6	34	87	0	126	41	16	8	33	1.80
31991725--31991931	27	7.7	27	73	4	159	37	20	19	22	1.94
31991761--31991893	53	2.5	54	82	3	162	38	21	19	21	1.94
31991724--31991889	80	2.1	81	81	3	192	38	22	18	21	1.93
31991950--31992021	24	3.0	24	85	0	90	25	9	20	44	1.82
31991981--31992037	24	2.4	24	84	0	69	21	10	22	45	1.82
31992128--31992216	26	3.3	26	79	4	61	20	24	23	31	1.98
31992163--31992216	26	2.1	26	92	0	90	20	22	22	35	1.96
31992222--31992361	32	4.4	32	80	5	149	19	16	22	42	1.89
31992217--31992391	64	2.8	63	83	1	199	21	16	21	41	1.90
31996999--31997633	324	2.0	324	83	5	818	29	17	13	39	1.88
32007653--32007709	29	2.0	29	100	0	114	33	7	24	35	1.82
32014785--32014830	22	2.1	22	88	8	67	36	10	13	39	1.79
32019167--32019194	12	2.3	12	100	0	56	35	35	14	14	1.86
32023890--32023929	21	1.9	21	84	0	53	27	0	5	67	1.11
32024065--32024112	18	2.6	19	90	6	73	25	8	4	62	1.41
32024283--32024307	12	2.1	12	100	0	50	24	0	0	76	0.80
32030103--32030132	10	3.0	10	90	0	51	40	23	0	36	1.55
32031951--32032362	220	1.8	224	86	5	602	40	29	8	21	1.83
32041677--32041731	25	2.2	24	81	15	60	43	0	1	54	1.10
32041869--32041963	45	2.1	44	88	5	138	33	27	4	34	1.76
32041944--32041995	16	3.2	16	94	0	86	34	36	0	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32042888--32042940	16	3.2	16	94	5	97	24	0	37	37	1.56
32042921--32043011	45	2.0	45	87	2	130	27	5	28	38	1.79
32042921--32043034	45	2.7	43	81	10	128	30	5	28	35	1.79
32043176--32043212	19	2.0	19	85	15	51	54	0	0	45	1.00
32043156--32043439	59	4.7	58	68	19	161	49	4	1	43	1.34
32043156--32043445	120	2.4	120	88	3	447	49	4	1	43	1.34
32057899--32057940	22	1.9	22	85	0	57	52	21	7	19	1.69
32063238--32063314	37	2.1	37	95	0	136	33	7	6	51	1.56
32065458--32065521	27	2.5	25	82	10	67	68	3	0	28	1.04
32068955--32069001	24	1.9	25	83	12	62	36	2	14	46	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208