genome.fa.s18.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  184  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57651874--57651913	14	2.8	14	84	3	53	52	20	2	25	1.59
57651933--57651975	14	3.1	14	75	0	50	46	34	0	18	1.50
57652240--57652491	113	2.2	112	89	2	380	29	25	18	25	1.98
57653751--57653810	18	3.5	17	69	15	52	26	6	3	63	1.35
57657891--57657957	30	2.2	30	94	2	116	20	7	10	61	1.53
57660200--57660242	18	2.6	16	80	20	52	62	0	0	37	0.95
57660206--57660237	9	3.4	10	87	12	50	56	0	0	43	0.99
57662520--57662565	23	2.0	23	83	8	58	36	0	13	50	1.41
57663003--57663046	21	2.1	21	100	0	88	52	0	20	27	1.47
57663322--57663363	21	2.0	21	100	0	84	47	0	28	23	1.52
57663362--57663388	3	9.0	3	100	0	54	33	0	0	66	0.92
57665130--57665172	19	2.2	20	95	4	79	32	23	25	18	1.97
57666035--57666067	11	2.8	12	90	4	50	60	3	12	24	1.46
57672275--57672304	15	2.1	14	93	6	51	50	0	0	50	1.00
57673636--57673748	57	2.0	58	82	8	142	14	0	35	49	1.49
57673632--57673747	29	4.0	28	72	8	99	13	0	34	50	1.48
57677982--57678024	22	2.0	22	100	0	86	32	4	13	48	1.63
57689780--57689814	3	11.7	3	87	0	52	60	0	2	37	1.12
57689779--57689814	15	2.4	15	95	0	63	58	0	2	38	1.13
57691207--57691259	26	2.0	28	85	7	74	20	20	13	45	1.84
57697191--57697220	15	2.1	14	93	6	51	50	0	0	50	1.00
57700052--57700091	16	2.5	16	91	0	71	35	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57704860--57704885	3	8.7	3	100	0	52	30	0	34	34	1.58
57710144--57710199	25	2.2	25	84	6	69	35	10	5	48	1.61
57714928--57714959	9	3.6	9	95	0	55	43	18	12	25	1.85
57715110--57715169	30	2.0	31	86	3	86	20	40	1	38	1.62
57718041--57718067	14	1.9	14	100	0	54	14	11	0	74	1.08
57723061--57723102	2	21.0	2	90	0	66	45	0	4	50	1.23
57723064--57723102	14	2.8	14	100	0	78	43	0	5	51	1.24
57730375--57730416	21	2.0	21	90	4	68	52	4	0	42	1.22
57731789--57731831	21	2.1	20	86	4	59	53	18	11	16	1.72
57734553--57734589	17	2.2	17	95	0	65	35	10	13	40	1.80
57736396--57736430	15	2.4	15	90	4	54	48	0	8	42	1.33
57737196--57737243	21	2.3	20	80	16	53	25	6	2	66	1.26
57743262--57743294	14	2.5	13	90	9	57	90	9	0	0	0.44
57746935--57746966	11	2.8	12	86	13	50	34	0	0	65	0.93
57746935--57746967	10	3.0	11	91	8	50	36	0	0	63	0.95
57747089--57747151	30	2.1	30	94	5	110	57	11	3	28	1.49
57748968--57749029	31	2.0	31	100	0	124	32	9	29	29	1.89
57758064--57758113	20	2.4	20	83	6	55	30	12	18	40	1.86
57758134--57758169	17	2.1	17	94	0	63	50	2	0	47	1.15
57758134--57758181	17	2.7	17	84	9	51	45	2	0	52	1.12
57762155--57762209	18	3.1	18	100	0	110	27	29	16	27	1.97
57763373--57763430	29	2.0	30	89	3	91	43	5	1	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57769791--57769843	22	2.4	22	87	0	70	45	26	18	9	1.80
57770756--57770820	32	2.0	32	100	0	130	36	29	3	30	1.73
57776790--57776818	2	14.5	2	100	0	58	51	0	0	48	1.00
57784520--57784659	43	3.3	43	67	7	131	40	10	10	39	1.74
57784512--57784684	86	2.0	86	98	0	337	41	11	8	38	1.72
57786058--57786141	42	2.0	42	95	0	150	16	21	23	38	1.93
57791244--57791325	5	16.0	5	87	5	110	41	0	21	36	1.54
57791688--57791783	38	2.6	38	81	5	106	29	12	17	40	1.86
57792271--57792312	22	2.0	20	86	9	57	54	0	2	42	1.13
57795280--57795383	51	2.0	51	82	12	124	25	8	18	48	1.76
57799573--57799615	9	4.8	9	85	0	59	32	30	6	30	1.84
57800404--57800433	14	2.1	14	93	0	51	43	10	6	40	1.64
57800521--57800576	7	7.7	7	76	21	53	30	0	1	67	1.01
57800521--57800575	15	3.8	14	77	17	58	29	0	1	69	0.99
57801063--57801100	18	2.1	19	90	5	60	81	5	2	10	0.94
57806531--57806573	21	2.0	21	95	0	77	41	11	27	18	1.85
57807659--57807742	42	2.0	42	97	0	159	30	10	15	42	1.81
57808466--57808533	33	2.1	33	83	10	86	51	2	0	45	1.16
57812277--57812354	34	2.2	34	95	4	138	21	20	28	29	1.98
57814197--57814228	16	2.0	16	93	0	55	34	25	6	34	1.81
57814561--57814592	16	2.0	16	100	0	64	37	31	0	31	1.58
57814920--57814981	23	2.8	23	81	11	60	59	4	8	27	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57818220--57818298	39	2.0	39	100	0	158	26	25	10	37	1.87
57823445--57823510	18	3.4	18	71	15	60	31	4	0	63	1.14
57823448--57823629	40	4.4	40	90	5	267	35	3	0	60	1.13
57823448--57823629	82	2.2	80	89	5	267	35	3	0	60	1.13
57828208--57828241	16	2.1	16	88	0	50	50	14	17	17	1.79
57832982--57833015	16	2.1	16	88	0	50	50	14	17	17	1.79
57836048--57836072	13	1.9	13	100	0	50	32	0	12	56	1.36
57841792--57841833	9	4.7	9	87	0	66	33	33	2	30	1.71
57842565--57842684	59	2.0	59	100	0	240	26	15	12	45	1.81
57859305--57859344	17	2.3	18	86	4	55	47	7	2	42	1.45
57861702--57861731	14	2.1	14	100	0	60	46	6	6	40	1.56
57861817--57861872	7	7.7	7	76	21	53	30	0	1	67	1.01
57861817--57861871	15	3.8	14	77	17	58	29	0	1	69	0.99
57865920--57865948	15	2.0	15	93	6	51	48	0	0	51	1.00
57872070--57872207	50	2.8	50	78	6	136	23	28	22	26	1.99
57872021--57872201	100	1.8	100	81	4	231	24	27	20	27	1.99
57873035--57873062	12	2.3	12	100	0	56	21	7	14	57	1.61
57873499--57873544	18	2.6	18	86	10	67	19	13	17	50	1.78
57877603--57878092	251	2.0	250	98	0	953	45	18	7	28	1.76
57878363--57878486	43	2.9	43	83	9	155	33	28	16	21	1.96
57884380--57884439	30	2.0	31	83	9	79	41	0	38	20	1.52
57884647--57884683	9	4.1	9	85	0	56	32	8	13	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57889687--57889728	21	2.0	21	100	0	84	66	4	4	23	1.30
57903115--57903158	22	2.0	22	95	0	79	22	15	36	25	1.94
57906336--57906388	22	2.4	21	84	6	70	22	0	30	47	1.52
57906430--57906467	13	2.9	13	92	0	58	18	0	31	50	1.47
57906484--57906516	16	2.1	16	88	11	50	42	0	0	57	0.98
57915325--57915415	43	2.1	43	87	2	130	34	10	10	43	1.75
57915816--57915923	42	2.5	43	88	4	157	21	19	25	34	1.96
57916591--57916628	18	2.1	18	100	0	76	31	23	10	34	1.89
57918327--57918360	17	1.9	17	88	5	50	61	2	8	26	1.40
57929662--57929737	23	3.3	23	88	0	116	22	21	26	30	1.99
57931187--57931223	17	2.1	17	90	5	56	54	0	0	45	1.00
57934779--57934845	30	2.2	30	91	2	107	22	4	11	61	1.48
57936935--57936959	13	1.9	13	100	0	50	64	8	0	28	1.22
57938077--57938107	3	10.7	3	93	6	55	35	0	0	64	0.94
57939424--57939482	3	19.3	3	78	16	59	61	3	1	33	1.23
57939427--57939470	16	2.8	15	89	6	61	61	2	0	36	1.09
57939424--57939470	11	4.6	10	77	12	51	61	2	0	36	1.08
57939423--57939470	19	2.5	19	86	6	62	60	2	0	37	1.09
57939470--57939507	20	1.9	20	84	10	51	57	7	5	28	1.49
57940574--57940606	13	2.4	14	90	5	50	72	0	9	18	1.10
57941330--57941379	3	16.7	3	87	0	73	32	2	4	62	1.25
57941739--57941830	39	2.4	39	82	7	109	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57941698--57941831	39	3.4	38	73	13	105	23	20	26	29	1.98
57945508--57945561	29	1.9	27	88	7	81	61	1	5	31	1.30
57961572--57961601	15	2.1	14	93	6	51	50	0	0	50	1.00
57965180--57965243	31	2.0	33	85	11	89	54	3	0	42	1.16
57965442--57965513	34	2.1	34	89	0	108	8	19	51	20	1.72
57965444--57965513	17	4.2	18	69	18	53	8	20	51	20	1.73
57968501--57968567	3	22.3	3	77	6	64	29	1	5	62	1.28
57968612--57968651	14	2.9	14	88	7	55	32	0	2	65	1.06
57969146--57969194	18	2.7	19	81	9	57	18	6	4	71	1.23
57976613--57976642	15	2.1	14	93	6	51	50	0	3	46	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208