genome.fa.s18.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  90  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31172778--31172840	17	3.7	17	86	0	90	19	47	22	11	1.80
31172793--31172867	32	2.3	32	86	9	98	18	45	24	12	1.83
31172790--31172867	34	2.4	33	85	8	106	17	43	24	14	1.86
31175437--31175550	51	2.2	51	87	6	158	45	7	20	27	1.76
31179351--31179413	26	2.5	25	87	7	92	36	3	23	36	1.71
31184103--31184164	30	2.1	30	100	0	124	38	20	6	33	1.79
31185033--31185070	20	1.9	20	88	0	58	60	10	2	26	1.43
31188230--31188255	13	2.0	13	100	0	52	30	23	23	23	1.99
31189300--31189325	13	2.0	13	100	0	52	30	23	23	23	1.99
31194387--31194411	6	4.2	6	100	0	50	84	0	0	16	0.63
31195253--31195289	2	19.5	2	83	10	51	45	0	0	54	1.00
31195330--31195391	5	12.6	5	71	21	51	77	3	19	0	0.90
31195329--31195392	25	2.6	24	90	9	94	76	3	20	0	0.92
31195331--31195392	29	2.1	29	85	5	81	75	3	20	0	0.94
31198265--31198302	19	2.1	19	90	5	60	63	5	0	31	1.17
31198269--31198312	19	2.3	19	84	4	52	70	4	2	22	1.17
31198390--31198569	10	18.7	10	70	19	57	62	3	2	32	1.24
31198371--31198424	26	2.0	27	85	3	74	62	1	1	33	1.16
31198480--31198577	10	9.9	10	72	14	69	64	2	3	30	1.20
31198474--31198535	22	2.9	21	80	4	70	64	1	4	29	1.23
31198506--31198582	19	4.0	20	71	17	63	61	2	3	32	1.28
31200016--31200049	17	1.9	18	88	5	52	11	8	8	70	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31202734--31203019	51	5.6	51	79	5	274	28	13	26	31	1.94
31202730--31202969	102	2.4	102	94	0	417	27	13	27	30	1.94
31204136--31204187	24	2.2	24	89	0	77	55	9	1	32	1.43
31205098--31205204	56	1.9	56	98	0	205	22	23	17	36	1.95
31206145--31206196	24	2.2	24	89	0	77	55	9	1	32	1.43
31208798--31208874	30	2.6	29	78	10	75	51	3	0	44	1.19
31210063--31210098	16	2.2	16	95	0	63	38	2	5	52	1.39
31210353--31210390	17	2.2	17	90	0	58	21	13	0	65	1.26
31213463--31213683	45	5.0	45	83	8	265	28	18	22	30	1.97
31213476--31213684	89	2.4	88	89	0	328	27	18	23	30	1.98
31216419--31216478	30	2.0	31	83	9	79	18	36	0	45	1.50
31217885--31217925	21	1.9	22	90	5	66	46	29	0	24	1.53
31231942--31231975	15	2.3	15	89	0	50	29	23	2	44	1.68
31240659--31240716	25	2.3	25	85	5	73	32	22	25	18	1.97
31240675--31240753	25	3.2	25	77	10	83	31	24	27	16	1.96
31242562--31242603	22	1.9	22	85	9	59	69	9	2	19	1.28
31243675--31243717	21	2.0	23	81	9	54	44	11	11	32	1.77
31243737--31243792	20	2.7	21	81	13	53	69	7	12	10	1.36
31243748--31243792	21	2.1	23	88	12	69	68	8	8	13	1.38
31246597--31246760	34	4.8	34	85	4	231	40	16	24	18	1.90
31246619--31246674	17	3.3	17	65	9	51	42	14	26	16	1.86
31246597--31246764	69	2.5	68	88	2	239	41	16	24	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31249675--31249714	17	2.3	18	86	4	55	52	15	2	30	1.55
31252312--31252336	3	8.3	3	100	0	50	68	0	32	0	0.90
31252836--31252887	26	2.0	26	100	0	104	34	7	7	50	1.60
31253730--31254143	106	3.9	106	88	1	585	33	19	16	30	1.94
31262530--31262592	31	2.0	31	100	0	126	38	20	6	34	1.78
31265942--31265972	6	5.2	6	96	0	53	80	0	19	0	0.71
31268829--31268859	15	2.1	15	93	0	53	12	19	25	41	1.87
31268844--31268949	42	2.5	41	86	6	133	21	18	19	39	1.92
31269015--31269048	14	2.4	14	100	0	68	55	23	8	11	1.63
31269269--31269335	21	3.2	21	86	0	89	2	47	19	29	1.64
31274835--31274913	16	4.6	17	74	14	65	37	1	17	43	1.58
31274846--31275052	9	23.4	9	72	14	128	34	0	21	43	1.56
31274835--31274915	25	3.2	25	77	10	101	37	1	18	43	1.58
31274835--31275006	25	7.3	24	70	21	98	35	0	20	43	1.56
31274886--31275003	62	1.9	61	86	6	166	33	0	21	44	1.52
31277783--31277950	83	2.0	84	92	1	284	30	17	11	39	1.86
31277459--31278274	408	2.0	407	96	0	1517	32	14	13	38	1.86
31278658--31278734	39	2.0	40	84	7	104	40	38	2	18	1.64
31278884--31278915	15	2.1	16	94	5	57	50	3	0	46	1.17
31278996--31279036	15	2.8	14	85	10	55	43	39	0	17	1.49
31279002--31279052	23	2.2	23	92	0	84	41	37	0	21	1.54
31279002--31279057	8	7.2	8	80	6	62	37	39	0	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31279088--31279121	14	2.5	13	90	4	50	41	35	0	23	1.55
31279398--31279768	113	3.3	108	78	12	367	27	26	22	22	1.99
31279338--31279768	226	1.9	216	82	10	521	28	26	22	23	1.99
31291604--31291657	28	2.0	27	85	10	74	57	0	3	38	1.17
31292017--31292170	51	3.0	51	96	1	283	45	18	7	28	1.76
31292116--31292226	33	3.4	34	82	10	115	43	17	8	31	1.78
31292450--31292498	15	2.9	18	80	20	61	44	0	0	55	0.99
31292450--31292504	15	3.4	16	80	16	53	43	0	1	54	1.10
31292720--31292787	16	4.2	16	96	0	127	39	35	0	25	1.56
31299603--31299629	14	1.9	14	100	0	54	59	7	3	29	1.42
31302827--31302869	18	2.4	18	80	7	52	46	2	0	51	1.13
31313989--31314094	49	2.2	49	98	1	205	33	10	30	25	1.89
31322774--31322824	5	9.8	5	83	8	57	76	7	0	15	1.00
31322774--31322823	27	1.9	26	84	8	66	76	8	0	16	1.02
31325450--31325505	25	2.2	25	83	3	67	28	0	5	66	1.14
31330442--31330586	74	2.0	74	92	0	245	42	12	21	24	1.87
31336041--31336092	19	2.7	19	80	13	54	42	3	1	51	1.31
31348990--31349035	18	2.6	18	82	0	56	32	4	4	58	1.37
31351708--31351768	3	20.3	3	79	0	50	19	67	3	9	1.34
31351708--31351786	6	13.7	6	81	7	65	18	64	3	12	1.42
31351708--31351768	15	4.1	15	80	0	59	19	67	3	9	1.34
31351719--31351768	21	2.4	21	93	0	82	20	68	0	12	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31351832--31351894	15	4.2	15	79	0	63	14	63	3	19	1.43
31351836--31351895	30	2.0	30	86	0	84	13	63	3	20	1.43
31351836--31351894	9	6.6	9	77	11	50	13	64	3	18	1.42
31351904--31351945	12	3.5	12	83	0	57	28	45	11	14	1.80
31351966--31352006	21	2.0	21	90	0	64	14	63	0	21	1.30
31352045--31352091	24	2.0	24	87	8	69	38	40	6	14	1.72
31352972--31353015	19	2.3	19	92	0	70	38	9	13	38	1.77
31352994--31353038	23	2.0	23	86	4	65	40	4	15	40	1.67
31353006--31353048	22	1.9	23	85	4	61	34	4	13	46	1.65
31359519--31359600	19	4.3	19	72	21	64	32	0	3	63	1.12
31359566--31359630	29	2.2	30	86	8	89	33	0	4	61	1.16
31362017--31362056	2	20.5	2	84	5	55	42	0	0	57	0.98
31363972--31364096	62	2.0	62	90	0	196	38	24	8	28	1.85
31365338--31365409	12	6.4	11	76	17	60	80	5	11	2	0.98
31365338--31365393	12	4.7	12	81	16	62	80	5	12	1	0.96
31365336--31365394	24	2.4	25	88	8	86	79	6	11	1	0.99
31365819--31365881	6	10.2	6	77	19	51	79	1	14	4	0.97
31365819--31365880	13	4.9	12	75	14	54	80	1	12	4	0.94
31366767--31367430	88	7.5	89	78	5	544	27	16	26	29	1.97
31366772--31367430	132	5.0	131	90	2	944	27	16	26	29	1.96
31367393--31367801	88	4.6	91	65	11	218	26	19	23	30	1.98
31367334--31368073	46	16.4	46	65	14	236	26	20	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31367350--31367913	134	4.2	134	97	0	1042	26	19	23	29	1.98
31367815--31368008	95	2.0	95	97	0	370	29	21	22	26	1.99
31367681--31368113	229	1.9	229	94	0	767	27	20	22	28	1.99
31368121--31368682	44	12.8	45	74	4	450	28	17	24	29	1.97
31368121--31368663	132	4.1	132	94	0	917	28	16	25	29	1.97
31370433--31370470	2	19.5	2	83	5	51	42	0	0	57	0.98
31374328--31374356	12	2.3	13	94	5	51	75	6	0	17	1.01
31383209--31383250	21	2.0	21	85	0	57	61	2	4	30	1.29
31396007--31396040	17	1.9	18	94	5	61	70	5	0	23	1.09
31405425--31405467	19	2.2	20	88	8	63	37	0	23	39	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208