genome.fa.s18.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  27  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10495657--10495696	20	2.0	20	100	0	80	25	30	15	30	1.95
10508917--10508954	19	2.1	18	85	14	51	52	0	5	42	1.24
10521581--10521820	122	2.0	122	98	0	462	29	17	20	32	1.96
10521991--10522016	11	2.4	11	100	0	52	38	7	0	53	1.30
10521976--10522064	39	2.3	38	86	7	124	31	3	0	65	1.09
10521976--10522074	40	2.5	41	79	8	116	33	3	0	63	1.10
10522023--10522102	31	2.6	30	84	9	92	33	1	0	65	1.01
10522041--10522083	19	2.2	20	95	4	79	32	2	0	65	1.06
10522040--10522085	20	2.3	21	88	11	78	32	2	0	65	1.05
10522047--10522120	32	2.4	31	81	6	87	33	1	1	63	1.11
10528164--10528204	21	2.0	21	85	4	57	60	9	2	26	1.40
10528274--10528350	30	2.5	30	79	6	75	38	2	11	46	1.54
10532439--10532552	38	3.0	39	84	7	162	37	3	20	38	1.70
10536746--10536785	20	2.0	20	95	0	71	32	20	7	40	1.80
10537221--10537267	24	2.0	24	84	16	62	51	17	0	31	1.46
10537927--10537981	13	3.9	14	75	17	51	1	21	3	72	1.09
10538029--10538119	35	2.6	36	81	10	107	46	4	0	49	1.22
10540461--10540566	41	2.6	41	95	0	185	21	21	25	31	1.98
10543434--10543514	25	3.2	25	89	0	108	16	22	20	40	1.91
10543790--10543820	14	2.2	14	100	0	62	41	0	29	29	1.56
10544524--10544624	51	2.0	51	92	0	166	34	26	8	29	1.87
10544805--10544871	33	2.0	33	91	0	107	23	50	1	23	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10545472--10545682	117	1.8	117	91	0	350	42	23	10	23	1.85
10545869--10545913	16	2.8	16	86	3	63	33	0	26	40	1.57
10546523--10546574	18	2.8	18	83	13	70	36	0	3	59	1.16
10552245--10552434	50	3.7	50	79	9	195	27	18	28	25	1.98
10552697--10552735	20	2.0	20	89	0	60	53	2	25	17	1.56
10555705--10555739	17	2.1	17	100	0	70	31	22	22	22	1.98
10566658--10566695	17	2.2	17	86	9	51	26	10	5	57	1.53
10568200--10568647	46	9.6	46	79	11	402	29	22	14	34	1.93
10568291--10568363	36	2.0	36	94	0	128	28	20	13	36	1.91
10568245--10568409	82	2.0	82	92	0	276	29	21	13	35	1.91
10568202--10568438	128	1.9	124	85	5	332	28	22	13	35	1.93
10568373--10568641	52	5.2	52	85	6	343	28	22	13	35	1.92
10568327--10568647	98	3.3	98	84	8	404	29	22	13	34	1.92
10568345--10568633	150	1.9	150	92	0	479	29	21	13	34	1.92
10570826--10570924	48	2.1	48	96	0	180	30	15	22	32	1.94
10585828--10585853	5	5.2	5	100	0	52	61	0	0	38	0.96
10590849--10590937	36	2.5	36	98	0	169	31	24	12	31	1.92
10590849--10590941	18	5.2	18	84	0	123	32	23	12	31	1.92
10611543--10611584	2	21.0	2	100	0	84	0	50	0	50	1.00
10619340--10619398	19	3.2	19	80	4	75	37	11	0	50	1.39
10619348--10619382	18	1.9	18	88	0	52	40	11	0	48	1.39
10619469--10619623	82	1.9	82	100	0	310	39	5	10	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10619714--10619777	19	3.4	19	78	4	85	51	1	10	35	1.47
10620166--10620231	28	2.4	28	97	0	123	48	0	10	40	1.38
10627530--10627619	46	2.0	46	93	0	153	37	16	12	33	1.86
10643944--10643980	11	3.3	11	85	7	56	62	0	0	37	0.96
10644069--10644114	25	1.9	24	91	8	76	56	4	6	32	1.45
10644744--10644841	27	3.6	27	84	2	126	9	32	32	25	1.87
10644874--10644934	16	3.7	16	80	8	68	9	8	11	70	1.34
10644859--10644934	18	4.2	18	80	11	84	10	9	10	69	1.36
10644902--10644942	18	2.3	18	91	4	66	12	7	14	65	1.45
10645371--10645395	12	2.1	12	100	0	50	36	0	0	64	0.94
10645645--10645672	7	4.0	7	100	0	56	42	0	0	57	0.99
10648006--10648111	25	4.4	24	81	5	126	37	21	23	16	1.93
10648533--10648598	33	1.9	33	81	9	78	12	25	4	57	1.53
10649199--10649272	28	2.7	27	73	24	73	54	5	0	40	1.24
10649858--10649893	14	2.6	14	86	0	54	33	16	8	41	1.78
10654655--10654878	113	2.0	113	98	0	430	44	16	5	34	1.70
10659367--10659425	24	2.5	24	77	0	64	27	55	3	13	1.54
10668939--10668968	15	2.1	15	93	6	53	86	13	0	0	0.57
10668939--10668968	7	4.1	7	91	8	51	86	13	0	0	0.57
10670247--10670284	20	1.9	20	88	0	58	50	0	2	47	1.15
10670245--10670290	20	2.3	20	76	0	56	50	0	2	47	1.13
10682371--10682570	105	1.9	105	97	0	382	34	25	7	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10687202--10687243	21	2.0	22	85	4	59	52	7	2	38	1.42
10687227--10687294	37	1.9	37	82	11	90	55	2	2	38	1.30
10688610--10688671	31	2.0	32	93	3	108	54	0	12	32	1.38
10689816--10689855	21	1.9	21	85	10	55	52	12	10	25	1.70
10690982--10691057	9	8.1	10	76	18	58	40	1	1	56	1.16
10691018--10691057	19	2.1	19	90	0	62	37	0	2	60	1.11
10697413--10697505	18	5.2	18	90	0	150	27	24	16	31	1.96
10697413--10697505	36	2.6	36	94	0	168	27	24	16	31	1.96
10708498--10708547	26	1.9	26	88	8	75	30	4	18	48	1.66
10717334--10717389	27	2.1	27	83	6	69	42	28	23	5	1.76
10723630--10723655	3	8.7	3	100	0	52	34	0	30	34	1.58
10732252--10732615	46	8.6	46	78	18	346	29	21	14	33	1.93
10732387--10732533	36	4.0	36	81	13	192	30	19	14	35	1.92
10732341--10732579	82	3.0	81	85	11	350	30	20	14	34	1.92
10732341--10732554	74	2.8	74	89	7	295	30	21	13	35	1.92
10737446--10737502	22	2.5	23	85	5	71	36	3	1	57	1.26
10738747--10738823	31	2.5	31	81	6	86	71	5	18	5	1.24
10745938--10746317	190	2.0	190	98	0	733	35	11	19	33	1.88
10747267--10747312	21	2.2	21	88	0	65	67	0	6	26	1.15
10762529--10762566	18	2.1	19	85	5	51	34	28	7	28	1.85
10769456--10769496	20	2.0	20	86	13	57	65	7	0	26	1.18
10770327--10770399	27	2.7	27	82	0	83	19	20	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10771129--10771222	29	3.5	28	69	26	85	43	12	3	40	1.59
10771123--10771234	53	2.1	53	96	0	206	48	11	2	37	1.54
10771123--10771201	24	3.1	23	68	28	61	49	11	2	36	1.52
10771136--10771214	25	3.0	25	70	18	72	45	13	2	37	1.58
10778244--10778291	20	2.3	20	86	10	62	52	2	2	43	1.24
10781425--10781483	21	3.0	21	70	22	56	61	5	5	28	1.39
10794369--10794597	112	2.0	111	90	3	361	37	14	13	34	1.85
10798233--10798275	9	4.8	9	85	5	52	72	0	2	25	0.97
10798290--10798405	10	12.3	9	67	22	53	31	5	0	62	1.23
10798341--10798414	28	2.6	27	77	12	69	27	6	0	66	1.17
10798587--10798622	18	2.0	18	88	0	54	38	8	25	27	1.84
10806539--10806606	31	2.2	31	81	5	84	45	7	10	36	1.66
10809309--10809400	46	2.0	46	87	4	132	47	13	9	29	1.74
10813294--10813663	183	2.0	183	88	0	551	25	24	18	31	1.98
10822732--10822856	64	2.0	64	91	0	205	20	20	25	33	1.97
10825313--10825361	25	2.0	25	83	0	62	32	24	12	30	1.92
10828208--10828248	21	2.0	21	85	0	55	41	21	4	31	1.74
10836307--10836351	24	1.9	23	82	13	56	40	0	4	55	1.20
10874795--10874874	39	2.1	39	81	9	92	56	2	2	38	1.26
10875407--10875464	25	2.3	24	88	11	82	32	0	0	67	0.91
10886476--10886616	57	2.4	56	82	9	156	31	20	25	22	1.98
10886506--10886614	57	1.9	57	86	3	157	31	20	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10886744--10886874	67	2.0	67	90	0	208	21	18	32	27	1.96
10900570--10900617	13	3.7	13	77	0	51	39	22	2	35	1.66
10907700--10907728	4	7.2	4	100	0	58	72	0	0	27	0.85
10911530--10912196	114	5.9	111	79	6	572	32	18	22	26	1.97
10911644--10912427	208	3.5	226	81	8	827	32	18	22	27	1.97
10912646--10912716	14	5.0	14	69	16	56	22	1	35	40	1.63
10913873--10913919	22	2.1	22	96	0	85	27	8	23	40	1.83
10914259--10914374	36	3.2	36	70	16	114	29	6	18	46	1.72
10914226--10914426	71	2.8	71	96	1	368	25	4	18	50	1.67
10914562--10914591	14	2.1	14	100	0	60	26	13	6	53	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208