genome.fa.s18.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  170  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54557777--54557984	91	2.3	91	91	0	326	45	3	4	46	1.41
54557899--54557959	28	2.2	28	85	5	81	45	0	3	50	1.17
54557818--54557959	44	3.2	43	68	20	119	45	2	3	48	1.31
54558011--54558199	59	3.2	57	68	19	152	41	3	4	50	1.37
54558038--54558236	66	3.2	64	68	19	186	41	3	6	49	1.44
54558000--54558297	120	2.5	120	93	1	517	42	2	5	49	1.37
54558073--54558260	61	3.1	61	69	17	192	42	1	6	48	1.39
54558125--54558176	15	3.6	15	80	12	56	44	0	1	53	1.11
54558241--54558275	18	2.0	17	88	5	52	45	0	0	54	0.99
54558441--54558530	45	2.0	45	82	2	110	36	27	6	28	1.82
54558511--54558559	16	3.0	16	94	5	89	36	38	0	24	1.56
54558511--54558557	17	2.8	17	96	3	87	34	40	0	25	1.56
54572528--54572575	21	2.3	20	89	3	69	2	31	0	66	1.03
54572560--54572590	6	5.2	6	92	0	53	0	45	0	54	0.99
54575115--54575167	19	2.7	19	79	2	52	35	13	11	39	1.80
54576919--54576948	15	2.0	15	100	0	60	26	20	13	40	1.89
54583560--54583654	30	3.2	30	63	31	76	24	11	11	52	1.70
54583533--54583654	60	2.0	60	100	0	244	22	11	14	50	1.75
54592901--54593150	83	3.0	83	94	0	428	26	18	10	46	1.80
54604646--54604694	21	2.2	23	82	7	57	40	2	0	57	1.10
54617016--54617072	30	1.9	29	89	3	87	57	1	3	36	1.26
54617269--54617354	43	2.1	41	82	10	104	37	1	3	58	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54623536--54623573	18	2.1	18	85	9	51	15	15	7	60	1.57
54623561--54623624	13	4.7	13	77	9	65	25	12	7	54	1.64
54623568--54623684	12	9.2	12	68	17	58	26	14	8	50	1.71
54623568--54623682	25	4.5	24	75	10	79	26	14	8	49	1.73
54626991--54627028	18	2.1	19	95	5	69	50	5	0	44	1.24
54629575--54629630	28	2.0	29	86	6	80	48	5	7	39	1.54
54631279--54631343	11	5.6	11	76	18	53	44	1	0	53	1.09
54631354--54631414	31	2.0	31	83	6	79	52	0	1	45	1.10
54631442--54631474	10	3.7	9	88	11	50	36	0	0	63	0.95
54631551--54631591	20	2.0	20	90	4	64	39	17	7	36	1.77
54634455--54634583	27	4.8	27	89	0	188	36	13	17	32	1.89
54635609--54636590	492	2.0	492	98	0	1892	35	28	10	24	1.89
54637879--54637905	14	1.9	14	100	0	54	51	7	18	22	1.70
54642734--54642775	18	2.3	18	84	11	59	35	2	0	61	1.09
54645184--54645208	12	2.1	12	100	0	50	24	48	0	28	1.52
54646181--54646213	14	2.2	16	89	10	52	57	0	9	33	1.30
54647454--54647490	12	3.0	13	76	15	51	43	0	0	56	0.99
54664157--54664194	3	12.7	3	100	0	76	34	0	0	65	0.93
54664918--54665555	312	2.1	308	81	6	727	33	11	11	44	1.76
54675031--54675215	43	4.3	43	80	11	161	28	22	21	28	1.99
54675113--54675218	42	2.5	43	90	4	162	23	19	24	32	1.98
54675651--54675677	12	2.2	12	100	0	54	0	40	18	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54675662--54675730	21	3.3	21	83	0	84	2	42	20	34	1.67
54681197--54681447	9	29.8	9	75	12	194	29	2	19	47	1.64
54681186--54681494	25	12.2	25	79	6	261	30	2	18	48	1.62
54681186--54681405	16	13.7	16	72	17	138	30	2	20	46	1.64
54681258--54681446	41	4.8	41	78	15	200	29	2	18	49	1.61
54681537--54681591	24	2.2	26	83	6	69	21	1	18	58	1.49
54681765--54681797	15	2.2	15	94	0	57	54	3	3	39	1.31
54683846--54684622	266	3.0	264	88	9	1267	29	19	19	31	1.96
54684022--54684507	242	2.0	244	95	3	870	29	19	18	32	1.96
54684677--54684992	114	2.8	113	83	5	377	28	20	23	27	1.99
54685140--54685172	17	1.9	18	88	11	52	45	0	12	42	1.41
54688192--54688217	6	4.3	6	100	0	52	15	15	69	0	1.20
54694808--54694833	3	8.7	3	100	0	52	34	34	0	30	1.58
54700100--54700193	9	10.6	9	89	2	129	26	4	0	69	1.07
54700100--54700193	6	15.8	6	92	5	129	26	4	0	69	1.07
54700357--54700389	17	1.9	17	88	11	50	21	0	0	78	0.75
54700491--54700546	26	2.3	24	82	17	71	28	3	3	64	1.27
54702141--54702171	16	1.9	16	93	0	53	32	9	6	51	1.60
54706373--54706639	43	6.2	43	91	0	392	26	28	17	26	1.97
54706373--54706644	128	2.1	128	90	0	400	27	28	16	26	1.97
54706701--54706740	22	1.9	20	85	10	53	62	2	0	35	1.09
54706704--54706760	23	2.5	24	80	8	64	56	1	1	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54715152--54715193	16	2.5	17	92	7	68	45	0	0	54	0.99
54715300--54715482	7	26.0	7	67	9	68	39	36	1	22	1.61
54715380--54715481	21	4.8	21	76	2	87	43	33	1	21	1.64
54715380--54715495	14	8.2	14	71	1	70	44	32	1	20	1.62
54715380--54715495	7	16.4	7	72	5	54	44	32	1	20	1.62
54715802--54715958	41	3.9	41	94	0	271	28	29	22	19	1.98
54716049--54716143	40	2.3	40	82	5	111	27	22	17	32	1.96
54723605--54723645	21	2.0	21	90	0	64	19	29	21	29	1.98
54729224--54729248	5	5.0	5	100	0	50	40	0	0	60	0.97
54730535--54730582	24	2.0	24	84	8	62	47	0	31	20	1.50
54730961--54731002	9	4.9	9	85	8	61	54	0	0	45	0.99
54731072--54731110	15	2.5	15	88	12	53	43	7	0	48	1.31
54731035--54731109	28	2.7	27	73	20	64	48	4	1	46	1.29
54731569--54731607	14	2.8	14	88	11	62	30	20	10	38	1.86
54731935--54731991	27	2.1	27	90	9	91	70	1	0	28	0.98
54739350--54739384	17	2.1	17	89	10	54	62	5	14	17	1.49
54739532--54739583	24	2.2	24	86	6	70	59	5	1	32	1.32
54744810--54744860	26	2.0	26	84	0	66	47	11	0	41	1.40
54755088--54755137	26	1.9	26	83	0	64	36	10	2	52	1.47
54758644--54758669	12	2.2	12	100	0	52	26	30	0	42	1.56
54759479--54759553	18	4.2	18	73	11	64	48	1	1	49	1.18
54764257--54764294	18	2.1	18	90	5	58	39	5	34	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54771191--54771846	113	5.7	114	77	6	524	31	17	23	26	1.97
54771954--54771989	18	2.0	18	89	10	56	25	0	5	69	1.10
54772355--54772400	13	3.4	14	80	16	53	17	0	47	34	1.48
54772363--54772403	20	2.0	20	85	0	55	14	0	46	39	1.45
54773628--54773715	44	2.0	44	90	0	140	25	15	22	36	1.94
54775164--54775199	16	2.2	16	95	0	63	27	11	5	55	1.57
54775979--54776052	18	4.3	18	66	22	50	20	4	14	60	1.50
54775973--54776078	51	2.1	51	96	1	196	22	4	14	58	1.54
54776459--54776508	21	2.4	21	86	0	64	36	16	44	4	1.66
54776829--54777068	42	5.7	42	86	2	331	31	23	21	22	1.98
54776824--54777068	85	2.9	84	86	3	343	32	23	21	22	1.98
54776829--54777113	42	6.8	42	84	2	268	30	23	21	24	1.99
54777466--54777500	17	2.1	17	89	10	54	60	8	14	17	1.58
54783487--54783653	50	3.3	50	73	9	169	24	20	22	32	1.98
54783372--54783653	99	2.8	99	86	3	372	24	19	22	33	1.97
54783666--54784585	44	21.1	44	67	11	198	26	23	19	31	1.98
54783637--54784256	175	3.5	175	93	0	1008	25	23	19	31	1.98
54784050--54784387	131	2.6	131	87	3	396	25	24	19	30	1.98
54783829--54784694	175	5.0	174	85	6	575	25	23	19	30	1.98
54784225--54784702	172	2.8	173	89	3	730	26	23	19	30	1.98
54792487--54792526	21	1.9	21	84	0	53	22	30	0	47	1.52
54798564--54798652	5	17.8	5	83	0	115	40	20	1	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54799181--54799327	49	3.0	50	70	7	138	27	31	19	21	1.97
54799170--54799367	98	2.0	98	85	0	261	27	31	20	20	1.97
54806390--54806439	17	3.1	16	75	19	50	30	0	2	68	1.01
54814727--54814752	12	2.2	12	100	0	52	7	15	30	46	1.74
54814741--54814873	40	3.3	39	80	7	135	32	20	22	24	1.98
54814927--54815129	41	5.0	41	93	0	334	19	23	29	28	1.98
54815763--54815807	21	2.1	21	84	8	56	24	0	42	33	1.55
54819950--54820040	43	2.1	43	87	2	130	35	10	9	43	1.73
54820313--54820473	42	3.8	43	85	4	220	21	17	33	27	1.96
54820544--54820588	22	2.1	21	91	4	72	44	26	17	11	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208