genome.fa.s18.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  124  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40808543--40808601	4	14.8	4	100	0	118	23	0	25	50	1.49
40809627--40809676	23	2.3	21	80	13	57	58	4	12	26	1.51
40810667--40810728	6	10.7	6	80	11	58	69	11	4	14	1.34
40811651--40811688	7	5.6	7	87	6	60	71	0	15	13	1.16
40811651--40811690	20	2.0	20	95	0	71	67	0	17	15	1.23
40811651--40811688	13	2.8	14	84	8	60	71	0	15	13	1.16
40811865--40811895	9	3.4	9	90	0	53	25	12	22	38	1.90
40811949--40811985	9	4.1	9	85	0	56	45	10	10	32	1.74
40813007--40813032	5	5.2	5	100	0	52	19	19	19	42	1.90
40814275--40814656	50	7.7	49	70	3	203	34	20	19	25	1.96
40814321--40814657	50	6.8	50	72	5	252	35	21	18	24	1.95
40814248--40814751	99	5.1	100	84	5	542	33	20	19	25	1.96
40814275--40814738	149	3.1	150	70	7	350	34	20	19	25	1.96
40814771--40815246	44	10.9	43	70	11	179	31	20	21	26	1.98
40814994--40815337	174	2.0	174	87	2	503	31	21	21	25	1.98
40814855--40815285	218	2.0	218	85	3	591	31	20	21	26	1.98
40814953--40815364	87	4.8	84	73	7	290	30	21	21	26	1.99
40815170--40815547	129	2.9	128	84	3	474	30	20	20	27	1.98
40814821--40815464	44	14.9	43	70	7	293	31	21	21	26	1.98
40817738--40817776	16	2.4	16	91	0	60	35	12	2	48	1.55
40817736--40817800	34	1.9	34	83	0	85	33	15	4	46	1.66
40821573--40821600	8	3.5	8	100	0	56	89	0	0	10	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40821563--40821670	49	2.1	49	81	11	119	75	3	12	9	1.17
40822578--40822619	7	6.3	7	89	10	70	71	0	14	14	1.15
40822578--40822619	13	3.2	13	96	3	75	71	0	14	14	1.15
40825309--40825488	28	6.5	28	94	2	294	26	13	28	31	1.94
40825309--40825488	55	3.3	55	94	1	299	26	13	28	31	1.94
40825309--40825488	83	2.2	82	93	1	306	26	13	28	31	1.94
40844904--40845083	28	6.5	28	94	2	294	26	13	28	31	1.94
40844904--40845083	55	3.3	55	94	1	299	26	13	28	31	1.94
40844904--40845083	83	2.2	82	93	1	306	26	13	28	31	1.94
40847331--40847807	50	9.6	49	68	6	233	34	20	18	25	1.96
40847320--40847807	99	4.9	101	84	3	533	34	20	19	25	1.96
40848008--40848382	129	2.9	127	83	4	448	30	20	21	27	1.98
40847877--40848303	44	9.8	44	71	8	214	30	20	21	26	1.98
40848264--40848346	43	1.9	43	82	4	105	36	16	18	28	1.93
40850347--40850372	13	2.0	13	100	0	52	30	0	7	61	1.24
40850594--40850632	16	2.4	16	91	0	60	35	12	2	48	1.55
40850592--40850656	34	1.9	34	83	0	85	33	15	4	46	1.66
40853295--40853504	39	5.3	39	92	2	316	24	27	22	25	2.00
40853295--40853556	78	3.3	78	86	7	293	24	27	22	25	2.00
40861506--40861714	39	5.3	39	91	4	307	24	27	22	25	2.00
40861506--40861765	78	3.3	78	85	8	282	25	27	21	26	1.99
40861506--40861765	117	2.2	117	84	11	320	25	27	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40869590--40869900	147	2.1	147	80	2	349	30	19	21	27	1.98
40882522--40882559	17	2.2	17	86	9	51	28	0	15	55	1.41
40889712--40889888	95	1.9	93	84	5	239	34	14	19	32	1.91
40891592--40891908	157	2.0	157	100	0	634	35	7	13	42	1.73
40891930--40891984	28	2.0	26	82	6	65	20	9	7	63	1.47
40891941--40891995	26	2.0	28	83	13	71	20	7	9	63	1.47
40894396--40894433	20	1.9	20	94	0	67	57	0	0	42	0.98
40894404--40894445	18	2.2	20	83	8	52	61	2	2	33	1.21
40894825--40894864	18	2.2	18	86	8	55	30	5	2	62	1.29
40894921--40895004	20	4.3	19	73	10	62	33	3	1	61	1.20
40895007--40895055	18	2.9	17	77	19	50	32	2	0	65	1.04
40896263--40896327	20	3.3	20	81	10	73	35	0	10	53	1.36
40896263--40896327	19	3.3	20	79	10	73	35	0	10	53	1.36
40897412--40897462	11	4.6	11	87	4	68	21	33	1	43	1.64
40897466--40897507	11	3.8	11	87	0	66	19	19	7	54	1.66
40897511--40897556	24	1.9	24	86	0	65	41	0	0	58	0.98
40897511--40897556	12	3.9	12	82	2	58	41	0	0	58	0.98
40898659--40898683	7	3.6	7	100	0	50	28	0	12	60	1.32
40899635--40899680	21	2.2	21	96	0	83	34	30	28	6	1.82
40899864--40900322	29	18.3	23	69	23	192	45	25	0	28	1.58
40899890--40900237	81	4.4	81	75	17	313	45	25	0	28	1.58
40900044--40900103	21	2.9	21	95	5	104	50	25	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40899920--40900322	177	2.3	176	88	2	576	45	25	0	28	1.59
40899884--40900237	29	13.3	29	74	20	312	45	25	0	28	1.58
40900221--40900290	21	3.4	21	84	9	92	47	22	1	28	1.60
40903483--40903833	126	2.8	126	90	0	551	31	21	16	30	1.96
40904838--40904880	22	2.0	21	82	13	52	48	4	2	44	1.36
40905473--40905508	18	2.0	18	88	0	54	19	2	8	69	1.27
40906459--40906485	3	9.0	3	100	0	54	33	0	0	66	0.92
40929851--40930178	29	11.3	29	81	3	347	21	25	14	39	1.90
40929861--40930202	87	3.9	87	88	1	470	21	25	12	40	1.89
40938228--40938305	38	2.0	39	90	2	122	46	10	10	33	1.72
40950670--40950709	18	2.2	18	90	0	62	25	2	7	65	1.32
40950717--40950764	21	2.2	21	85	10	62	52	2	2	43	1.24
40953910--40953965	29	2.0	28	89	6	87	37	12	14	35	1.84
40962256--40962300	18	2.6	17	83	13	56	40	8	17	33	1.81
40974895--40974924	4	7.2	4	96	3	51	26	0	3	70	1.03
40979852--40979930	37	2.1	37	90	0	122	25	31	18	24	1.98
40980048--40980387	47	7.2	47	87	4	477	29	30	8	31	1.87
40980048--40980387	96	3.6	96	90	2	499	29	30	8	31	1.87
40981819--40981843	13	1.9	13	100	0	50	32	16	20	32	1.94
40988713--40988742	10	2.9	10	95	5	51	0	13	0	86	0.57
40989470--40989495	5	5.2	5	100	0	52	0	19	0	80	0.71
40997943--40997984	14	2.8	15	75	10	50	50	9	11	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41002054--41002105	24	2.2	24	89	0	77	50	9	3	36	1.54
41006400--41006449	24	2.1	24	88	0	73	48	10	4	38	1.56
41009163--41009395	45	5.2	45	96	0	403	25	21	15	37	1.92
41014733--41014781	20	2.4	20	79	3	53	20	12	8	59	1.58
41015575--41015807	45	5.2	45	96	0	403	25	21	15	37	1.92
41017793--41018188	196	2.0	196	98	0	765	29	18	11	41	1.85
41019811--41019946	43	3.2	43	81	4	150	31	27	16	24	1.96
41021227--41021382	33	4.6	33	69	23	126	19	19	27	33	1.96
41021217--41021497	76	3.8	73	69	24	212	22	18	27	32	1.97
41021223--41021425	103	2.0	103	95	0	361	20	18	28	32	1.96
41021363--41021468	43	2.5	43	95	0	185	22	16	27	33	1.96
41025337--41025402	21	3.0	22	76	8	64	25	3	46	24	1.66
41025448--41025684	123	1.9	124	90	0	377	34	11	12	41	1.78
41026630--41026668	7	5.6	7	84	0	51	33	48	0	17	1.48
41026631--41026671	21	1.9	22	90	5	66	34	48	0	17	1.47
41026646--41026826	96	1.9	96	89	0	281	41	30	1	25	1.65
41026646--41026855	96	2.2	96	85	2	278	42	31	1	24	1.64
41026916--41026949	15	2.3	15	85	5	52	35	29	0	35	1.58
41035735--41035933	41	4.9	41	76	2	193	30	27	20	22	1.98
41035970--41036078	40	2.7	41	68	2	94	20	22	25	31	1.98
41043659--41045270	804	2.0	803	91	0	2587	33	24	17	23	1.96
41049325--41049379	27	2.0	27	100	0	110	32	25	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41049711--41049767	26	2.2	26	83	0	69	42	19	15	22	1.89
41055907--41055957	25	2.0	25	88	7	77	62	3	3	29	1.31
41060174--41060331	9	15.9	10	68	20	64	36	2	0	61	1.10
41060164--41060334	39	4.5	40	78	18	195	36	2	0	61	1.09
41060164--41060287	9	12.6	9	68	17	68	32	2	0	65	1.06
41060225--41060328	30	3.5	28	86	11	129	34	1	0	63	1.06
41060284--41060334	10	4.9	11	77	18	56	43	1	0	54	1.11
41060165--41060335	70	2.4	71	84	5	231	36	2	0	61	1.09
41060254--41060334	41	2.0	41	85	4	110	39	1	0	59	1.05
41060583--41060643	20	3.3	19	73	17	56	32	4	1	60	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208