genome.fa.s18.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  130  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42687481--42687512	9	3.6	9	100	0	64	9	0	0	90	0.45
42688002--42688046	16	2.9	15	83	9	54	24	0	4	71	1.05
42691035--42691075	20	2.0	20	100	0	82	41	19	19	19	1.91
42693344--42693408	20	3.3	20	78	2	60	63	4	4	27	1.34
42693573--42693623	17	2.7	19	77	19	54	31	1	1	64	1.15
42693588--42693702	10	11.6	10	68	22	73	36	0	3	59	1.21
42693586--42693690	28	3.6	28	76	15	88	37	0	2	59	1.19
42694458--42694486	3	9.7	3	100	0	58	68	0	0	31	0.89
42694776--42694845	29	2.3	31	85	11	101	40	0	1	58	1.07
42694780--42694843	30	2.2	29	86	13	87	39	0	1	59	1.07
42694780--42694843	28	2.2	29	88	8	94	39	0	1	59	1.07
42706499--42706523	7	3.6	7	100	0	50	28	0	0	72	0.86
42707264--42707372	49	2.2	51	81	6	125	28	12	22	36	1.91
42707364--42707405	22	1.9	22	90	0	66	33	19	16	30	1.94
42709871--42709907	18	2.1	18	89	0	56	27	24	18	29	1.98
42713740--42714180	221	2.0	221	87	0	630	33	13	20	32	1.92
42716828--42716870	23	1.9	23	90	4	70	34	9	13	41	1.77
42716889--42717014	45	2.8	46	76	9	123	31	20	18	29	1.96
42716980--42717111	24	6.1	22	71	19	91	36	21	12	29	1.91
42719185--42719319	64	2.1	64	97	0	252	45	4	5	44	1.46
42721449--42721534	18	4.9	17	73	21	79	63	0	6	29	1.20
42722079--42722119	21	1.9	22	85	5	57	48	26	2	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42736779--42737296	27	19.4	27	80	3	485	35	19	19	25	1.95
42736779--42737296	53	9.7	54	79	6	434	35	19	19	25	1.95
42736779--42737248	80	5.9	79	80	5	410	36	19	19	25	1.95
42736783--42737269	267	1.8	267	81	4	615	36	19	18	25	1.95
42737462--42737511	26	1.9	26	91	0	82	14	18	26	42	1.87
42737517--42737620	32	3.2	32	88	0	163	24	19	16	40	1.91
42737516--42737673	64	2.5	64	84	2	183	25	18	18	37	1.93
42737685--42737726	22	1.9	22	90	0	66	21	19	14	45	1.85
42740538--42740562	12	2.1	12	100	0	50	32	16	8	44	1.76
42744499--42744568	36	1.9	37	82	8	90	54	2	2	40	1.30
42765444--42765485	18	2.4	18	84	4	50	42	2	11	42	1.54
42765807--42765954	39	3.8	39	81	0	125	22	18	27	31	1.97
42765845--42766005	39	4.2	39	76	6	143	21	18	27	32	1.96
42767164--42767204	20	2.0	20	85	0	55	29	7	7	56	1.54
42770550--42770597	18	2.7	18	71	9	53	43	2	14	39	1.57
42780891--42781106	39	5.5	39	83	1	272	17	19	30	32	1.95
42784088--42784214	43	3.0	42	75	17	134	29	29	18	23	1.97
42819076--42819186	19	5.8	19	86	0	159	40	8	12	38	1.73
42819083--42819186	38	2.7	38	95	0	181	41	7	11	39	1.70
42819076--42819209	19	6.7	22	73	16	66	39	7	13	39	1.73
42819831--42819889	23	2.6	23	76	12	68	30	1	3	64	1.20
42823498--42823530	14	2.3	15	89	5	50	30	15	30	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42824967--42826041	132	8.2	132	92	1	1732	28	18	23	29	1.98
42826374--42826439	19	3.5	19	87	0	105	40	9	12	37	1.74
42826367--42826465	19	4.9	21	81	6	84	39	7	14	39	1.73
42827085--42827142	22	2.6	23	76	17	68	31	1	3	63	1.21
42851160--42851194	10	3.4	10	84	7	52	34	8	25	31	1.86
42857946--42858084	50	2.6	52	86	6	183	25	30	20	24	1.99
42857946--42858094	56	2.9	50	85	6	190	24	29	20	25	1.99
42869480--42869646	27	6.3	27	83	3	205	35	18	20	24	1.95
42869489--42869630	53	2.6	54	89	1	214	35	19	20	23	1.95
42869480--42869635	80	1.9	80	85	1	213	35	19	19	25	1.96
42874277--42874301	12	2.1	12	100	0	50	60	0	0	40	0.97
42882943--42882981	13	2.8	13	84	7	51	51	0	20	28	1.48
42886230--42886265	18	2.1	18	89	5	56	0	30	0	69	0.89
42886230--42886317	46	1.9	45	84	6	115	4	29	2	63	1.26
42887171--42887221	15	3.4	15	76	10	50	19	15	1	62	1.41
42890185--42890261	19	4.2	18	78	18	79	64	0	2	32	1.07
42890175--42890252	26	2.9	26	81	7	84	66	1	1	30	1.07
42893516--42893565	21	2.4	20	80	9	55	72	6	0	22	1.07
42894185--42894261	19	3.7	21	80	13	77	41	16	5	36	1.71
42894185--42894242	22	2.6	22	84	7	73	43	17	3	36	1.66
42894198--42894274	19	3.8	19	89	6	91	38	16	7	36	1.78
42894577--42894916	174	1.9	176	82	5	431	27	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42894584--42895611	44	23.7	44	68	16	364	28	22	19	29	1.98
42894674--42894911	133	1.8	129	82	10	304	28	23	20	28	1.99
42894850--42894956	40	2.5	44	79	8	116	30	20	22	26	1.98
42894665--42895129	217	2.2	216	86	4	636	28	22	20	28	1.98
42894884--42895306	173	2.4	173	89	3	609	29	22	19	28	1.98
42894717--42895602	217	4.1	217	80	8	789	28	22	19	28	1.98
42894666--42895483	390	2.1	389	87	5	1152	28	22	19	29	1.98
42894884--42895392	173	2.9	172	84	6	514	29	22	19	29	1.98
42894803--42895602	390	2.1	389	86	3	1101	28	23	19	28	1.98
42895594--42896006	132	3.1	132	91	0	673	24	24	21	29	1.99
42898023--42898089	25	2.7	25	93	2	118	53	4	16	25	1.61
42902304--42902380	4	18.8	4	73	15	50	71	2	1	24	1.06
42902953--42903010	22	2.6	22	84	7	73	43	17	3	36	1.66
42902966--42903044	21	3.8	19	80	12	77	39	16	7	36	1.77
42903000--42903043	21	2.1	21	100	0	88	38	13	9	38	1.77
42907893--42907947	24	2.3	23	81	6	65	52	9	0	38	1.33
42909167--42909219	11	4.5	11	76	17	52	69	1	1	26	1.09
42912646--42912703	30	1.9	30	85	0	80	36	3	27	32	1.74
42913046--42913188	50	2.7	52	84	6	164	24	21	29	24	1.99
42914075--42914116	21	2.0	21	86	4	59	30	0	11	57	1.35
42919712--42919965	56	4.8	56	85	3	280	26	19	29	24	1.98
42919712--42920014	56	5.8	50	82	5	259	27	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42919712--42919915	106	1.9	110	84	6	281	25	19	30	24	1.98
42919829--42920014	50	3.8	49	83	3	196	26	23	27	22	1.99
42922563--42922845	87	3.3	87	80	4	281	40	12	12	34	1.80
42925639--42925765	50	2.4	50	83	7	146	25	17	29	26	1.97
42932149--42932326	27	6.6	27	85	3	214	26	14	28	30	1.95
42932150--42932305	82	1.9	81	89	3	242	26	14	28	30	1.95
42932146--42932326	82	2.2	81	84	2	238	27	14	27	30	1.95
42937106--42937212	50	2.1	50	81	6	128	27	20	30	21	1.98
42951931--42952040	42	2.6	44	84	5	136	25	17	25	31	1.97
42951938--42952040	43	2.4	42	82	6	118	26	17	25	31	1.97
42955311--42955361	23	2.3	22	83	6	68	52	19	0	27	1.46
42955311--42955361	10	4.6	11	75	15	52	52	19	0	27	1.46
42963119--42963165	20	2.4	20	83	13	62	55	0	6	38	1.26
42963120--42963192	27	2.6	28	78	10	78	56	0	6	36	1.26
42964987--42965108	44	2.8	44	88	1	145	20	18	27	33	1.96
42965072--42965888	87	9.4	87	83	5	558	21	24	23	29	1.99
42965028--42966192	43	26.8	43	69	11	577	21	24	23	29	1.99
42965134--42966192	130	8.1	130	76	8	446	21	24	23	29	1.99
42965028--42965714	217	3.2	216	84	4	814	21	24	23	30	1.99
42965046--42966192	304	3.8	304	94	0	1911	21	24	23	29	1.99
42965134--42966018	217	4.1	217	83	4	977	21	24	24	29	1.99
42965855--42966248	87	4.5	87	87	0	563	22	24	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42965264--42966248	174	5.7	174	79	6	833	21	24	23	29	1.99
42970535--42970903	163	2.2	164	81	2	427	30	14	10	44	1.78
42970544--42971050	82	6.3	82	81	4	392	29	13	10	46	1.77
42970691--42971090	77	5.1	77	79	7	313	30	14	10	44	1.78
42973479--42973637	41	3.9	41	84	5	214	21	22	24	31	1.98
42973481--42973637	42	3.8	41	84	5	210	21	22	23	31	1.98
42974495--42974525	7	4.4	7	100	0	62	29	0	38	32	1.57
42974671--42974710	19	2.1	19	86	9	55	22	0	42	35	1.54
42974815--42974844	15	2.0	15	93	0	51	23	0	33	43	1.54
42974615--42974902	121	2.4	117	83	6	348	28	1	27	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208