genome.fa.s18.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  195  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60708565--60708607	22	2.0	22	90	0	68	32	0	0	67	0.91
60709212--60709284	28	2.6	27	77	10	76	47	27	1	23	1.59
60716942--60716969	13	2.2	13	100	0	56	60	7	0	32	1.24
60717123--60717157	17	2.1	17	94	0	61	51	2	5	40	1.40
60718602--60718989	132	2.9	132	90	3	593	28	24	16	30	1.96
60718746--60719297	44	12.6	45	69	17	234	28	25	16	29	1.97
60718623--60719316	132	5.3	132	86	4	467	28	24	16	29	1.97
60718778--60719162	176	2.2	176	93	0	644	28	25	16	29	1.96
60718657--60719294	308	2.1	308	93	0	1089	28	25	16	29	1.97
60718964--60719788	132	6.3	132	91	1	1257	27	24	17	29	1.98
60718657--60719424	308	2.5	305	85	5	888	28	25	16	29	1.97
60718964--60719509	88	6.2	87	69	14	248	27	24	17	29	1.97
60719480--60719676	44	4.5	44	66	21	126	24	26	18	29	1.98
60719777--60720024	46	5.4	46	90	0	379	31	24	16	28	1.96
60721228--60721281	6	8.7	6	80	8	63	0	24	0	75	0.80
60725876--60725915	6	6.3	6	88	11	62	35	0	17	47	1.48
60728127--60728243	61	1.9	61	85	3	164	23	28	17	29	1.97
60731334--60731539	45	4.6	44	79	10	188	26	19	13	40	1.89
60731333--60731539	90	2.3	90	82	4	240	26	19	13	40	1.88
60735142--60735299	49	3.2	49	81	0	145	35	16	18	29	1.93
60735365--60735508	34	4.3	33	75	12	123	41	15	12	30	1.84
60736572--60736600	14	2.0	15	93	6	51	62	0	17	20	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60738043--60738079	9	4.1	9	92	0	65	45	13	10	29	1.77
60739502--60739526	11	2.3	11	100	0	50	16	0	0	84	0.63
60740531--60740747	107	2.0	106	90	2	337	34	18	16	30	1.94
60741183--60741288	29	3.6	28	78	12	106	36	16	2	44	1.62
60741898--60742010	52	2.2	52	78	9	115	30	6	1	61	1.30
60741993--60742066	13	5.8	13	69	17	50	33	2	1	62	1.18
60747740--60747776	13	2.8	13	91	0	56	37	10	5	45	1.62
60755616--60755665	20	2.5	19	87	6	64	6	24	0	70	1.10
60758431--60758542	59	1.9	59	82	10	140	60	7	0	32	1.24
60758841--60758868	13	2.2	13	100	0	56	82	0	0	17	0.68
60759503--60759550	7	6.7	7	78	21	55	39	29	0	31	1.57
60770869--60770912	19	2.3	20	84	7	56	40	11	20	27	1.86
60773246--60773296	18	2.8	19	79	8	61	54	0	9	35	1.33
60773246--60773312	37	1.9	37	85	11	97	53	0	10	35	1.35
60774554--60774602	23	2.1	23	96	0	89	10	4	42	42	1.57
60775140--60775166	7	3.9	7	100	0	54	14	0	0	85	0.61
60783292--60783426	62	2.2	62	83	4	173	24	31	15	28	1.96
60783975--60784033	24	2.5	22	78	15	64	72	5	22	0	1.03
60785664--60785976	164	2.0	160	88	7	476	38	16	8	36	1.79
60786489--60786519	14	2.2	14	100	0	62	32	6	19	41	1.77
60791706--60791751	18	2.6	18	86	10	67	13	10	19	56	1.66
60796965--60796997	16	2.1	16	94	5	59	39	6	12	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60796998--60797045	17	2.9	16	80	14	53	35	0	4	60	1.16
60799176--60799294	20	6.1	19	72	18	75	15	0	42	41	1.52
60799176--60799260	14	6.1	14	75	8	75	15	1	44	38	1.54
60799176--60799252	7	11.3	6	73	20	55	16	1	44	37	1.57
60799196--60799314	21	5.8	21	78	12	95	14	1	42	41	1.55
60800182--60800238	23	2.4	24	91	2	89	29	45	1	22	1.63
60800182--60800240	12	5.1	11	76	8	55	32	44	1	22	1.63
60800312--60800341	14	2.2	14	94	5	53	13	36	26	23	1.92
60800707--60800746	12	3.3	12	83	13	55	22	7	12	57	1.60
60800800--60800881	31	2.7	31	90	5	134	21	8	17	52	1.71
60802193--60802493	69	4.3	69	96	1	541	41	5	5	47	1.50
60802237--60802474	21	10.4	21	64	24	83	41	5	4	48	1.45
60802211--60802439	21	10.0	22	63	31	58	41	5	4	48	1.47
60802721--60802774	16	3.3	16	86	2	72	48	18	0	33	1.49
60802668--60803036	135	2.8	126	89	8	587	43	16	4	35	1.69
60802842--60803063	9	25.3	9	67	18	96	43	17	4	35	1.68
60802842--60802912	25	2.9	25	89	2	99	46	18	1	33	1.58
60802871--60803061	16	10.9	17	70	15	97	44	17	4	34	1.68
60802977--60803063	25	3.5	25	81	12	106	43	19	2	34	1.64
60802982--60803061	16	4.9	16	86	6	115	46	18	1	33	1.58
60803603--60803873	135	2.0	135	97	0	515	28	18	19	33	1.95
60807394--60807730	129	2.6	129	90	1	505	24	17	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60807369--60807730	43	8.4	43	74	6	243	25	17	29	28	1.97
60807737--60807831	43	2.2	43	83	3	120	28	28	20	23	1.98
60809330--60809363	3	11.3	3	100	0	68	35	0	0	64	0.94
60810653--60810690	20	1.9	20	88	0	58	18	0	10	71	1.14
60810659--60810715	20	2.9	18	77	12	60	19	3	5	71	1.19
60810660--60810708	20	2.5	19	86	3	62	20	4	4	71	1.19
60812006--60812054	21	2.2	24	82	10	59	12	16	2	69	1.28
60812412--60813048	114	5.6	114	88	2	915	26	21	25	27	1.99
60812848--60813235	186	2.1	187	88	2	584	26	20	25	27	1.99
60812957--60813121	73	2.3	72	89	1	240	24	21	26	27	1.99
60812730--60813364	300	2.1	301	86	2	884	26	21	25	26	1.99
60813027--60813948	114	8.1	114	88	1	1287	26	21	25	26	1.99
60812497--60813592	530	2.1	529	91	1	1775	27	21	25	26	1.99
60812488--60813699	643	1.9	634	93	0	1902	26	21	25	26	1.99
60814166--60814253	37	2.4	37	90	3	142	17	3	44	35	1.65
60814187--60814253	16	3.9	16	71	21	55	17	2	46	32	1.64
60814166--60814273	37	2.9	37	86	4	110	17	4	41	36	1.70
60816221--60816498	41	6.8	39	80	5	295	25	19	23	31	1.98
60816221--60816499	82	3.4	81	84	3	344	25	19	23	31	1.98
60817371--60817396	8	3.2	8	100	0	52	11	11	11	65	1.48
60818629--60818668	21	2.0	21	90	5	64	57	5	0	37	1.21
60819648--60819678	16	1.9	16	100	0	62	35	12	12	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60820759--60820896	44	3.2	44	82	1	170	26	19	26	27	1.99
60820731--60820896	87	1.9	86	82	7	210	27	18	26	27	1.98
60820759--60820918	87	1.8	88	81	4	198	27	20	25	27	1.99
60822393--60822586	95	2.1	94	97	1	361	49	18	17	15	1.80
60823424--60823459	5	7.2	5	93	0	63	77	0	2	19	0.88
60825900--60826141	43	5.7	43	85	3	294	23	16	28	30	1.96
60825913--60826142	87	2.7	86	82	6	277	23	16	29	31	1.96
60829593--60829642	20	2.4	21	87	12	77	4	24	0	72	1.02
60829608--60829638	10	3.1	10	90	0	53	0	29	0	70	0.87
60832585--60832666	10	8.7	9	74	15	58	59	6	1	32	1.30
60832585--60832649	19	3.4	18	77	8	51	56	7	1	33	1.37
60832604--60832665	29	2.1	28	82	11	72	62	6	0	30	1.20
60837580--60837613	15	2.2	16	89	5	52	32	2	0	64	1.08
60839187--60839215	3	9.7	3	100	0	58	34	0	0	65	0.93
60839297--60839323	6	4.5	6	100	0	54	14	0	0	85	0.61
60839713--60839753	16	2.6	16	88	7	57	39	2	0	58	1.11
60839707--60839754	18	2.5	20	86	6	64	39	2	0	58	1.10
60839711--60839779	20	3.8	18	79	11	70	40	7	0	52	1.29
60839790--60839825	18	2.0	18	88	0	54	41	8	5	44	1.58
60840042--60840072	4	7.8	4	100	0	62	0	0	22	77	0.77
60842355--60842493	70	2.0	70	94	0	242	31	23	7	37	1.83
60843014--60843055	21	2.0	21	100	0	84	38	19	4	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60843118--60843159	20	2.1	20	100	0	84	35	23	11	28	1.91
60845266--60845314	18	2.7	19	78	9	57	18	4	6	71	1.23
60849306--60849334	10	2.7	11	89	10	51	79	0	20	0	0.74
60849641--60849939	97	2.9	100	84	7	379	26	16	9	48	1.75
60850832--60852274	46	31.2	46	88	1	2003	27	16	26	29	1.96
60854381--60854429	18	2.7	19	84	9	66	16	4	6	73	1.19
60859119--60859431	97	3.1	98	82	11	396	26	16	8	47	1.76
60860317--60861209	46	19.4	46	87	0	1196	26	15	27	31	1.95
60863152--60863200	18	2.7	19	78	9	57	18	4	6	71	1.23
60867567--60867600	16	2.1	16	88	0	50	79	2	14	2	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208