genome.fa.s18.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  129  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42437550--42437609	15	3.8	15	71	16	50	46	23	1	28	1.62
42439077--42439276	50	3.9	50	81	6	206	28	21	27	23	1.99
42439090--42439276	100	1.8	104	81	6	238	27	20	28	22	1.99
42439140--42439335	50	3.9	49	78	6	144	29	20	25	25	1.99
42446787--42446979	50	3.7	50	80	4	179	29	21	26	22	1.99
42463546--42463573	14	2.0	14	100	0	56	42	14	7	35	1.73
42464182--42464211	3	10.0	3	100	0	60	33	0	0	66	0.92
42474881--42474906	12	2.2	12	100	0	52	53	15	7	23	1.67
42476334--42476381	16	2.7	19	81	15	59	39	4	0	56	1.19
42479765--42479873	45	2.4	45	80	14	134	46	16	17	19	1.84
42479862--42480018	45	3.5	45	83	1	208	36	17	21	24	1.95
42479833--42480008	90	2.0	90	79	4	194	37	19	19	23	1.94
42479869--42480069	90	2.2	90	81	3	217	36	18	19	24	1.94
42482734--42482796	25	2.6	25	80	10	76	31	7	3	57	1.43
42482990--42483031	16	2.7	16	82	10	52	28	4	2	64	1.26
42487399--42487434	16	2.2	16	100	0	72	77	11	0	11	0.99
42487395--42487445	26	1.9	27	92	4	86	76	9	0	13	1.02
42487395--42487448	10	5.7	10	77	20	62	77	9	0	12	0.98
42487465--42487508	5	8.4	5	85	9	61	77	0	22	0	0.77
42487465--42487508	11	4.2	10	88	8	61	77	0	22	0	0.77
42487465--42487507	16	2.7	16	96	0	77	76	0	23	0	0.78
42488455--42488550	48	2.0	48	89	0	147	45	18	21	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42489394--42489440	24	2.0	24	95	0	85	40	14	19	25	1.90
42489923--42490044	44	2.7	45	79	2	120	28	23	22	25	1.99
42489773--42490763	143	7.0	143	87	2	1341	30	20	22	26	1.98
42490351--42490802	44	9.8	45	70	11	209	29	20	23	26	1.98
42492683--42492724	16	2.7	16	82	10	52	28	4	2	64	1.26
42498227--42498860	47	13.4	47	89	4	880	33	9	28	28	1.88
42498979--42499057	37	2.1	37	90	0	122	24	18	31	25	1.98
42502023--42502060	19	1.9	20	89	10	60	31	7	2	57	1.41
42502076--42502118	24	1.9	23	86	13	63	60	6	2	30	1.35
42504129--42504206	6	12.2	6	77	12	66	5	12	3	78	1.06
42504130--42504189	14	4.5	13	79	10	68	3	15	3	78	1.01
42504128--42504212	39	2.2	40	93	2	145	4	15	3	76	1.09
42504138--42504221	39	2.2	38	82	8	98	8	15	3	72	1.22
42504923--42505180	43	6.0	43	75	8	195	27	27	18	26	1.98
42504974--42505179	42	4.8	42	79	7	191	28	28	16	26	1.97
42504974--42505183	85	2.5	85	83	3	278	27	28	17	26	1.98
42505780--42505805	5	5.2	5	100	0	52	80	19	0	0	0.71
42509395--42509535	7	19.7	7	69	7	50	43	32	1	22	1.62
42509439--42509470	15	2.2	14	94	5	55	37	40	0	21	1.54
42509414--42509535	64	1.9	64	82	0	154	44	31	1	22	1.63
42510067--42510104	14	2.7	15	84	12	53	42	28	2	26	1.69
42510325--42510425	14	7.2	14	71	15	66	46	33	1	17	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42510728--42510962	41	5.7	41	88	2	319	28	28	20	22	1.99
42510728--42510962	82	2.9	82	88	0	353	28	28	20	22	1.99
42510685--42510950	123	2.2	123	84	2	349	30	26	21	22	1.99
42511031--42511130	40	2.5	40	87	7	134	22	23	20	35	1.96
42511261--42511319	31	1.9	31	89	0	91	13	16	47	22	1.82
42514800--42514825	2	13.0	2	100	0	52	50	0	0	50	1.00
42527381--42527412	11	2.9	11	90	0	55	28	6	0	65	1.16
42527928--42528001	32	2.2	33	90	4	114	31	4	21	43	1.71
42528025--42528100	29	2.7	28	83	4	91	31	6	15	46	1.72
42530993--42531125	53	2.5	53	80	2	142	27	18	15	39	1.91
42535208--42535278	28	2.5	28	86	8	101	30	11	26	30	1.91
42537207--42537247	19	2.2	19	86	0	55	46	14	7	31	1.72
42546406--42546617	31	6.8	31	73	2	138	23	39	14	22	1.91
42546406--42546611	93	2.2	93	79	0	223	24	39	14	21	1.91
42557903--42558127	40	5.7	40	84	6	224	24	20	28	27	1.99
42557956--42558125	40	4.3	40	89	3	227	24	19	28	27	1.98
42566153--42566225	29	2.5	29	93	0	119	43	13	9	32	1.77
42574719--42574758	16	2.5	17	92	8	66	45	30	15	10	1.78
42574735--42574895	38	4.2	38	83	3	182	37	31	19	12	1.89
42574729--42574895	76	2.2	76	84	3	210	37	30	19	12	1.89
42577866--42577898	17	2.0	16	94	5	57	45	0	0	54	0.99
42577867--42577905	17	2.4	17	87	8	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42578327--42578362	18	1.9	19	88	5	56	38	0	5	55	1.23
42583752--42583859	53	2.0	54	89	5	166	37	20	20	22	1.95
42587484--42587543	19	3.0	20	79	13	54	55	10	0	35	1.34
42587506--42587543	19	2.1	19	90	5	60	57	7	0	34	1.28
42588112--42588264	59	2.6	59	81	7	166	24	18	17	39	1.91
42589492--42589555	19	3.3	19	86	8	85	56	3	0	40	1.15
42589504--42589561	19	3.0	19	85	7	73	53	1	0	44	1.10
42594980--42595214	113	2.1	113	96	0	436	42	11	16	30	1.82
42605403--42605450	24	2.0	24	100	0	96	37	8	4	50	1.52
42607289--42607332	18	2.4	18	80	3	52	50	15	11	22	1.76
42612291--42612337	22	2.2	22	84	3	60	34	2	38	25	1.68
42619446--42619475	12	2.5	12	94	0	51	26	6	16	50	1.70
42621294--42621483	51	3.8	50	83	3	229	26	15	27	30	1.96
42622714--42622764	23	2.3	23	96	3	95	33	27	0	39	1.57
42633058--42633111	17	3.1	17	82	12	65	68	1	27	1	1.10
42638118--42638146	14	2.0	15	93	6	51	34	44	0	20	1.52
42638110--42638155	22	2.1	22	87	0	65	30	43	0	26	1.55
42638135--42638196	21	3.0	21	75	15	65	37	35	0	27	1.57
42638255--42638311	21	2.9	18	78	16	60	52	17	15	14	1.75
42638460--42638503	7	6.3	7	82	10	54	45	36	0	18	1.49
42638461--42638500	20	2.0	21	95	5	73	50	32	0	17	1.47
42638460--42638513	15	3.8	15	76	11	51	48	33	0	18	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42638509--42638557	21	2.3	21	78	0	62	44	32	0	22	1.53
42638821--42639735	114	8.1	114	85	2	1130	28	24	19	26	1.99
42655303--42655368	32	2.0	34	88	5	100	57	6	30	6	1.47
42656404--42656894	44	10.9	44	74	10	260	31	20	21	27	1.98
42656404--42656891	132	3.6	137	75	12	384	30	20	21	27	1.98
42656496--42656978	226	2.1	226	93	0	822	31	20	21	27	1.98
42656409--42656978	44	12.5	44	72	12	246	31	20	21	27	1.98
42657529--42657569	19	2.2	19	91	4	66	73	7	7	12	1.25
42658455--42658572	53	2.1	55	83	9	143	30	8	4	56	1.48
42658780--42658814	12	2.9	12	88	12	54	8	8	8	74	1.23
42658846--42658890	3	15.0	3	100	0	90	33	0	0	66	0.92
42659690--42659774	43	2.0	43	100	0	170	25	11	12	49	1.75
42659694--42659793	43	2.4	42	88	5	132	26	11	13	50	1.74
42660857--42660928	10	7.5	10	73	16	55	62	1	1	34	1.13
42660880--42660937	18	3.2	19	79	13	59	63	1	0	34	1.04
42660946--42660970	12	2.1	12	100	0	50	76	0	0	24	0.80
42660856--42660974	8	12.2	9	71	19	55	61	0	3	34	1.18
42660879--42660974	9	9.9	10	73	14	51	63	1	3	32	1.17
42661145--42661257	17	6.4	17	69	17	61	29	0	0	69	0.94
42661145--42661230	27	3.2	28	84	9	92	32	0	1	66	1.00
42661163--42661232	28	2.6	27	84	8	88	32	0	1	65	1.01
42662333--42662375	17	2.5	17	76	3	50	37	0	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42664935--42664968	17	2.1	16	88	5	50	8	11	2	76	1.12
42670553--42670582	15	2.0	15	100	0	60	80	6	0	13	0.91
42670557--42670605	6	8.7	6	84	8	50	71	8	6	14	1.29
42672760--42672844	44	1.9	44	83	9	111	25	18	25	29	1.98
42672785--42673293	128	4.0	128	91	0	788	30	19	23	25	1.98
42674242--42674275	17	2.1	16	88	5	50	8	11	2	76	1.12
42678892--42679087	96	2.1	96	89	0	295	34	18	11	35	1.87
42680623--42680675	26	2.0	25	82	13	63	52	9	16	20	1.71
42680885--42680913	8	3.6	8	100	0	58	75	0	0	24	0.80
42683830--42683866	17	2.2	17	100	0	74	29	24	0	45	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208