genome.fa.s18.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  208  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64042750--64042890	56	2.5	55	79	10	144	24	11	9	54	1.65
64045410--64045717	151	2.0	151	97	0	580	46	11	9	32	1.73
64054352--64054398	19	2.5	19	76	13	53	31	4	0	63	1.13
64055288--64055630	178	1.9	176	86	2	481	46	9	12	31	1.74
64067724--64067773	26	1.9	26	84	8	66	48	2	4	46	1.32
64067869--64067914	21	2.2	22	92	7	78	56	8	10	23	1.61
64071623--64071653	14	2.2	14	94	0	53	19	0	3	77	0.90
64071690--64071727	13	2.7	14	88	8	51	65	0	0	34	0.93
64071699--64071727	15	2.0	15	93	6	51	68	0	0	31	0.89
64072570--64072639	32	2.2	32	84	2	88	34	10	4	51	1.55
64078693--64078733	17	2.4	17	91	0	64	9	9	2	78	1.06
64079664--64079726	3	21.0	3	90	0	99	34	0	1	63	1.04
64079998--64080042	23	2.0	23	100	0	90	35	4	4	55	1.40
64082852--64082916	26	2.4	28	80	10	73	41	1	0	56	1.08
64082870--64082935	26	2.6	26	78	9	64	50	0	1	48	1.10
64083013--64083087	33	2.3	33	79	9	89	38	13	2	45	1.57
64083091--64083137	24	2.0	24	91	0	76	38	10	2	48	1.50
64083095--64083146	24	2.2	24	82	0	59	38	11	1	48	1.51
64083553--64083687	71	1.9	71	90	0	216	29	20	18	31	1.97
64084192--64084221	15	2.1	15	93	6	53	63	0	13	23	1.29
64084566--64084598	17	1.9	17	88	11	50	42	0	0	57	0.98
64089352--64089424	2	36.5	2	100	0	146	0	0	49	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64098346--64098386	21	2.0	21	95	0	73	19	21	26	31	1.97
64105392--64105467	29	2.5	30	79	10	84	32	9	5	52	1.56
64113156--64113195	20	2.0	20	95	0	71	47	15	17	20	1.83
64129066--64129098	16	2.1	16	100	0	66	24	15	18	42	1.88
64133814--64133874	30	2.0	30	100	0	122	36	22	16	24	1.94
64134487--64134512	12	2.2	12	100	0	52	50	15	26	7	1.71
64136061--64136085	2	12.5	2	100	0	50	52	0	48	0	1.00
64143005--64143056	24	2.2	24	85	0	68	53	5	3	36	1.43
64144393--64144459	34	1.9	35	87	3	100	31	8	14	44	1.76
64146738--64146802	31	2.1	30	83	8	78	46	1	6	46	1.37
64154447--64154527	38	2.1	38	95	0	144	39	6	22	32	1.79
64163961--64164027	29	2.3	30	86	5	100	29	16	8	44	1.78
64171039--64171140	41	2.5	40	87	9	143	27	25	20	26	1.99
64172807--64172832	13	2.0	13	100	0	52	61	23	0	15	1.33
64174298--64174356	26	2.2	27	85	14	79	40	28	16	13	1.87
64175620--64175786	80	2.1	80	100	0	334	38	16	7	37	1.77
64183437--64183567	44	2.9	46	69	18	130	45	19	19	16	1.86
64187958--64188016	29	2.0	29	83	3	73	30	8	11	49	1.69
64197943--64197972	13	2.3	13	100	0	60	20	6	13	60	1.55
64198851--64199160	157	2.0	157	92	0	521	47	4	3	44	1.40
64199020--64199054	18	2.0	17	88	5	52	45	0	0	54	0.99
64199290--64199341	16	3.2	16	94	0	95	38	34	0	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64204115--64204184	33	2.1	33	86	7	97	54	11	7	27	1.62
64204288--64204329	21	2.0	21	100	0	84	52	14	19	14	1.75
64206257--64206289	17	2.0	17	94	5	59	27	6	6	60	1.44
64206257--64206310	18	3.0	18	84	15	60	29	9	3	57	1.47
64217189--64217242	25	2.2	26	100	0	94	53	7	3	35	1.47
64217592--64217811	114	1.9	114	94	0	386	32	14	20	32	1.93
64218473--64218532	22	2.8	21	82	5	75	20	25	20	35	1.96
64218473--64218532	21	2.8	22	85	5	79	20	25	20	35	1.96
64221424--64221456	6	5.5	6	100	0	66	33	18	48	0	1.48
64225068--64225136	16	4.2	16	92	3	120	24	1	37	36	1.65
64225068--64225136	33	2.1	32	94	2	120	24	1	37	36	1.65
64225117--64225207	45	2.0	45	85	2	121	27	6	28	37	1.82
64225372--64225406	18	2.0	17	88	5	52	54	0	0	45	0.99
64225355--64226099	120	6.2	120	97	0	1305	47	5	3	43	1.42
64229119--64229194	33	2.3	33	97	0	143	35	5	15	43	1.70
64229229--64229310	37	2.2	37	91	0	128	35	8	15	40	1.78
64241606--64241635	4	7.2	4	96	3	51	23	0	0	76	0.78
64249485--64249509	5	5.0	5	100	0	50	60	0	0	40	0.97
64256265--64256371	53	2.0	53	100	0	214	29	16	16	36	1.92
64257829--64257880	23	2.3	23	100	0	104	38	17	15	28	1.90
64263112--64263163	23	2.3	23	100	0	104	28	15	17	38	1.90
64272920--64273026	53	2.0	53	100	0	214	29	16	16	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64274484--64274535	23	2.3	23	100	0	104	38	17	15	28	1.90
64279728--64279773	22	2.1	22	100	0	92	30	10	17	41	1.84
64305154--64305597	150	3.0	150	95	2	778	21	16	18	43	1.88
64306474--64306502	3	9.7	3	100	0	58	31	0	0	68	0.89
64309459--64309609	78	1.9	78	91	0	248	27	21	22	27	1.99
64312550--64312575	9	2.9	9	100	0	52	0	11	11	76	1.01
64318394--64318436	17	2.4	17	80	11	50	16	0	48	34	1.46
64319716--64319749	17	1.9	18	94	5	61	32	38	29	0	1.58
64321119--64321210	29	3.2	29	87	0	130	34	3	7	54	1.45
64322195--64322229	16	2.2	16	90	10	54	51	2	17	28	1.59
64326223--64326252	16	1.9	16	93	6	53	10	0	13	76	1.01
64327078--64327129	25	2.0	25	88	3	77	69	0	0	30	0.89
64327099--64327134	18	1.9	19	94	5	65	66	0	0	33	0.92
64327099--64327135	17	2.1	19	90	10	60	67	0	0	32	0.91
64330146--64330179	6	5.7	6	92	0	50	0	11	14	73	1.10
64332799--64332836	19	2.0	19	90	10	60	63	0	2	34	1.09
64334942--64335467	231	2.3	229	87	3	736	23	15	14	46	1.82
64337840--64338372	267	2.0	265	97	0	994	25	15	19	39	1.91
64341732--64341854	61	2.0	61	98	0	237	36	13	23	26	1.91
64342911--64342961	20	2.5	20	75	12	52	60	11	0	27	1.31
64348301--64348325	6	4.2	6	100	0	50	16	0	0	84	0.63
64354997--64355038	23	1.9	22	90	9	68	35	2	0	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64354996--64355045	22	2.3	22	79	6	57	36	2	0	62	1.07
64354996--64355045	23	2.3	21	82	6	64	36	2	0	62	1.07
64355261--64355293	14	2.3	15	89	5	50	48	21	0	30	1.50
64356073--64356186	9	11.9	9	68	20	63	63	2	1	32	1.19
64356118--64356169	19	2.7	19	87	0	59	65	3	1	28	1.21
64358850--64358884	14	2.4	15	85	9	54	42	34	0	22	1.54
64358854--64358885	14	2.3	14	94	0	55	43	34	0	21	1.53
64367298--64367349	8	6.1	9	76	13	56	9	0	36	53	1.34
64367306--64367349	17	2.7	16	86	6	61	9	0	36	54	1.32
64367302--64367349	25	1.9	25	91	0	78	8	0	39	52	1.32
64367459--64367505	23	2.0	24	87	4	69	12	2	36	48	1.53
64367340--64368377	80	13.2	78	79	7	532	7	3	47	40	1.51
64367167--64368892	7	242.9	7	84	5	1186	6	5	50	38	1.50
64368896--64368942	1	47.0	1	100	0	94	0	0	0	100	0.00
64368940--64368997	7	8.1	7	98	1	107	13	0	41	44	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208

The End!