genome.fa.s18.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  95  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32366698--32366835	8	16.4	8	65	20	59	34	0	14	50	1.49
32366595--32366756	61	2.5	64	79	17	174	33	0	13	53	1.40
32366667--32366783	48	2.4	48	98	0	225	34	0	12	52	1.39
32366689--32366809	27	4.7	27	85	12	175	34	0	13	52	1.41
32366995--32367038	16	2.8	16	82	0	61	56	2	2	38	1.24
32367071--32367152	38	2.2	38	97	0	155	41	2	0	56	1.13
32367299--32367433	19	6.8	19	74	22	118	53	14	0	32	1.41
32367294--32367359	21	3.2	21	89	10	109	57	13	0	28	1.37
32367429--32367495	27	2.5	27	95	0	125	11	32	22	32	1.90
32370202--32370239	17	2.3	17	86	4	51	42	7	13	36	1.73
32372948--32372990	20	2.2	20	87	8	61	39	2	13	44	1.57
32385697--32385752	19	2.9	19	78	7	60	26	30	1	41	1.66
32387984--32388040	14	4.1	14	74	14	55	12	0	38	49	1.41
32388214--32388629	126	3.3	126	90	1	620	34	19	19	26	1.96
32391987--32392027	21	2.0	21	85	0	55	9	24	36	29	1.87
32392284--32392326	18	2.4	18	88	0	59	44	9	27	18	1.80
32394087--32394117	12	2.7	12	95	5	55	70	0	0	29	0.87
32394158--32394203	11	4.2	11	78	18	51	43	0	32	23	1.54
32394164--32394206	10	4.0	10	82	14	50	46	0	30	23	1.52
32407785--32408156	125	3.0	126	79	2	340	24	15	15	45	1.84
32411135--32411162	14	2.0	14	100	0	56	71	7	0	21	1.09
32411114--32411156	17	2.5	16	85	11	50	72	6	0	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32412097--32412149	21	2.7	19	83	11	70	39	18	11	30	1.86
32412484--32412690	44	4.7	44	66	13	129	28	26	17	28	1.98
32412378--32413030	132	4.9	132	91	0	1013	29	24	17	28	1.97
32412998--32413149	45	3.4	45	66	12	107	24	23	22	30	1.99
32419257--32419300	13	3.3	13	78	6	52	59	0	2	38	1.10
32419262--32419302	12	2.9	15	75	20	52	56	0	4	39	1.21
32419938--32420033	21	4.8	19	83	9	129	37	17	9	35	1.82
32419931--32420033	40	2.6	40	90	3	156	36	18	8	35	1.82
32419915--32420033	21	5.8	20	80	11	127	38	17	8	35	1.80
32421867--32421943	14	5.0	15	71	20	52	42	14	9	33	1.77
32421883--32421922	20	2.0	20	90	0	62	50	12	10	27	1.72
32421871--32421937	34	1.9	35	90	3	109	46	13	8	31	1.74
32424719--32424779	31	2.0	31	81	12	72	52	1	0	45	1.10
32424901--32424946	6	7.7	6	100	0	92	15	52	0	32	1.43
32427271--32427360	45	2.0	45	100	0	180	53	17	2	26	1.56
32428382--32428433	20	2.4	22	84	12	72	34	0	3	61	1.14
32430249--32430282	17	2.0	17	88	0	50	41	14	0	44	1.45
32432527--32432577	25	2.0	26	84	3	68	47	1	0	50	1.12
32443953--32444015	30	2.1	31	90	3	101	26	25	6	41	1.79
32443962--32444009	15	3.2	15	71	11	53	27	22	8	41	1.82
32460895--32461018	46	2.8	46	91	3	200	27	22	16	33	1.96
32460895--32461129	37	5.8	45	87	8	207	26	21	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32460980--32461156	37	4.8	37	95	0	300	26	20	13	38	1.90
32468108--32468231	46	2.8	46	91	3	200	27	22	16	33	1.96
32468108--32468342	37	5.8	45	86	8	198	27	21	15	36	1.93
32468193--32468369	37	4.8	37	94	0	291	27	20	12	38	1.89
32471202--32471881	132	5.2	132	97	0	1234	28	16	25	29	1.97
32477016--32477196	8	23.1	8	67	18	89	60	0	4	33	1.22
32476964--32477079	50	2.3	49	80	12	114	60	0	5	34	1.19
32477133--32477202	5	13.4	5	73	18	54	62	1	1	34	1.13
32477144--32477204	21	2.9	21	80	11	63	63	3	1	31	1.20
32477058--32477180	25	4.9	26	73	20	93	60	0	5	33	1.20
32477187--32477245	26	2.2	26	82	8	66	61	1	3	33	1.23
32482818--32482852	12	2.8	12	91	4	52	31	8	0	60	1.27
32494234--32494266	1	33.0	1	93	0	57	96	3	0	0	0.20
32495592--32496019	44	9.8	44	70	10	218	29	20	21	28	1.98
32495579--32496064	175	2.8	175	94	0	846	30	18	22	28	1.97
32497606--32497641	3	12.0	3	87	0	54	36	2	0	61	1.11
32504267--32504360	30	3.1	30	92	1	152	27	24	6	41	1.79
32504277--32504354	15	5.2	15	73	11	70	28	21	7	42	1.80
32505697--32505763	29	2.3	30	85	10	86	52	2	0	44	1.16
32505742--32505783	20	2.1	20	86	8	59	57	2	0	40	1.12
32510435--32510529	27	3.4	27	72	16	77	60	3	7	29	1.40
32510816--32511085	86	3.1	88	78	5	280	34	8	17	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32512901--32512974	31	2.4	31	86	2	96	37	14	17	29	1.90
32515039--32515090	23	2.3	23	96	3	97	34	11	3	50	1.57
32515993--32516038	14	3.2	14	81	3	56	56	8	2	32	1.42
32516792--32516820	11	2.5	12	88	11	51	48	10	6	34	1.64
32519131--32519188	30	2.0	29	83	12	75	39	20	13	25	1.90
32519338--32519585	133	1.9	133	87	0	370	28	23	17	30	1.97
32519952--32520031	40	2.0	40	95	0	142	13	16	36	33	1.88
32522010--32522052	22	2.0	22	81	9	52	55	0	11	32	1.36
32522537--32522720	86	2.1	86	88	8	271	46	11	8	33	1.70
32537921--32537960	12	3.5	12	75	25	50	55	2	0	42	1.13
32539361--32539387	12	2.2	12	100	0	54	33	0	33	33	1.58
32542915--32542944	16	1.9	15	93	6	51	53	3	0	43	1.17
32545487--32545678	63	3.0	63	77	1	206	26	28	19	26	1.99
32546686--32546744	29	2.0	30	83	3	75	33	5	13	47	1.65
32547964--32548026	20	3.2	20	73	6	58	34	0	3	61	1.12
32548617--32548659	11	3.6	11	82	14	50	48	0	0	51	1.00
32550393--32550761	46	8.0	46	92	0	594	28	23	8	39	1.84
32554855--32554893	13	3.0	13	88	0	60	43	2	7	46	1.46
32559127--32559164	19	2.0	20	89	5	60	15	13	10	60	1.59
32572465--32572508	22	2.0	22	86	0	61	54	18	4	22	1.61
32577535--32577583	23	2.1	22	85	14	64	63	2	0	34	1.06
32578928--32578996	27	2.5	28	88	9	106	68	0	2	28	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32593961--32594028	27	2.6	26	88	9	102	20	22	17	39	1.92
32593961--32594034	26	2.8	26	84	8	96	20	21	17	40	1.91
32597811--32597839	5	6.0	5	92	8	51	62	37	0	0	0.96
32599237--32599270	3	11.0	3	93	6	59	32	0	0	67	0.91
32603788--32604286	44	10.9	49	79	7	200	33	17	19	29	1.95
32603839--32604662	44	18.6	44	80	3	722	32	16	20	30	1.95
32608757--32608835	3	25.3	3	72	10	52	30	6	2	60	1.35
32608756--32608828	30	2.4	29	80	15	78	28	8	2	60	1.40
32608883--32608936	27	2.0	27	96	0	99	18	27	33	20	1.96
32609486--32609527	16	2.5	17	76	11	50	38	2	0	59	1.10
32619852--32619893	4	10.5	4	90	10	68	73	0	23	2	0.94
32623457--32623488	3	10.7	3	100	0	64	65	0	0	34	0.93
32623487--32623521	3	11.7	3	100	0	70	34	0	0	65	0.93
32624158--32624191	17	1.9	18	88	5	52	73	5	8	11	1.24
32627039--32627846	150	5.3	148	85	8	1045	30	10	7	51	1.64
32627039--32627826	305	2.6	304	88	5	1212	30	10	7	51	1.64
32627703--32627945	118	2.1	117	88	5	357	30	8	8	53	1.61
32627824--32628124	151	2.0	155	86	3	432	28	11	8	51	1.67
32627562--32628111	269	2.0	272	91	1	892	29	10	8	52	1.65
32628533--32628572	3	13.0	3	94	5	71	65	2	0	32	1.06
32636011--32636156	61	2.4	60	75	6	141	41	16	4	38	1.67
32648162--32648210	15	3.5	15	83	16	77	34	10	8	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32648157--32648230	20	3.3	20	72	22	58	32	8	8	51	1.61
32648172--32648211	12	3.1	12	80	19	53	35	10	7	47	1.65
32652781--32652921	63	2.3	62	82	6	160	26	28	20	24	1.99
32654203--32654387	91	2.0	91	98	0	361	40	15	5	38	1.72
32657519--32657571	27	2.0	27	81	7	63	69	3	16	9	1.30
32657801--32657844	19	2.4	18	82	14	54	50	2	2	45	1.27
32660955--32660987	3	11.0	3	100	0	66	33	0	0	66	0.92
32663323--32663349	11	2.5	11	100	0	54	51	7	0	40	1.30
32663392--32663438	9	5.0	9	80	10	58	70	2	0	27	0.99
32663392--32663438	18	2.5	20	86	13	64	70	2	0	27	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208