genome.fa.s18.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  152  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49384046--49384085	20	2.0	20	85	0	53	50	22	0	27	1.50
49388303--49388365	28	2.1	31	85	11	87	33	4	3	58	1.35
49388422--49388483	21	2.9	21	72	16	56	32	4	0	62	1.16
49388414--49388470	29	2.0	29	85	0	78	31	5	0	63	1.17
49391702--49391730	3	9.7	3	100	0	58	68	0	31	0	0.89
49392154--49392184	4	7.8	4	100	0	62	77	0	22	0	0.77
49392149--49392188	8	4.8	9	90	6	50	80	0	20	0	0.72
49392788--49392853	29	2.2	31	84	10	84	39	0	3	57	1.14
49393163--49393198	18	2.0	18	89	10	56	41	5	19	33	1.75
49393244--49393299	27	2.2	25	83	6	67	35	3	12	48	1.58
49393276--49393347	31	2.4	30	79	9	83	37	9	9	43	1.71
49393659--49393698	20	2.0	20	100	0	80	55	10	0	35	1.34
49405329--49405499	40	4.3	40	92	2	258	26	27	21	24	1.99
49405329--49405548	80	2.8	81	83	8	258	25	28	20	25	1.99
49405929--49405953	13	1.9	13	100	0	50	0	8	4	88	0.64
49412597--49412820	79	2.8	80	82	7	278	25	27	21	25	1.99
49412597--49412820	40	5.7	40	85	6	262	25	27	21	25	1.99
49415004--49415033	13	2.3	13	100	0	60	60	13	6	20	1.55
49416447--49416535	44	2.0	44	97	0	169	46	10	11	32	1.73
49426072--49426119	23	2.1	22	85	11	62	27	4	14	54	1.59
49428831--49428881	13	3.8	13	84	10	59	54	7	1	35	1.40
49428906--49428932	13	2.1	13	100	0	54	55	14	7	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49432421--49432471	20	2.5	20	78	6	59	13	31	21	33	1.92
49437355--49437388	16	2.2	16	89	5	52	26	2	5	64	1.30
49441619--49441687	34	2.0	34	100	0	138	39	20	5	34	1.76
49442585--49442624	6	6.7	6	100	0	80	0	85	0	15	0.61
49448923--49448970	20	2.4	19	76	10	51	33	2	29	35	1.69
49452322--49452411	39	2.2	41	88	3	130	38	1	7	52	1.38
49460020--49460061	21	2.0	21	90	0	66	40	0	19	40	1.51
49460195--49460253	21	2.8	20	77	7	64	37	0	15	47	1.45
49460888--49460922	18	2.0	17	88	5	52	65	0	2	31	1.07
49461939--49462026	25	3.5	24	77	10	77	23	23	20	31	1.98
49461942--49462061	24	4.9	24	74	12	86	21	25	19	33	1.97
49462007--49462146	25	5.7	25	76	8	110	20	24	22	33	1.97
49463058--49463096	13	3.0	13	84	0	51	12	23	35	28	1.91
49465029--49465063	12	2.8	12	91	4	52	31	8	0	60	1.27
49478326--49478372	23	2.1	23	84	7	62	51	12	4	31	1.59
49485013--49485070	29	2.0	30	86	10	84	62	1	24	12	1.39
49492600--49493983	760	1.8	756	90	1	2261	34	14	21	29	1.93
49495282--49495324	20	2.2	20	87	8	61	53	9	4	32	1.53
49494088--49495687	803	2.0	803	92	0	2686	38	16	17	27	1.90
49496026--49496153	64	2.0	64	92	0	211	27	18	15	38	1.91
49514827--49514860	12	2.8	12	100	0	68	70	0	17	11	1.16
49514839--49514876	18	2.1	18	90	9	60	71	0	21	7	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49514893--49514955	31	2.0	31	82	11	76	61	3	25	9	1.41
49519508--49519697	95	2.0	95	100	0	380	25	18	15	40	1.91
49520216--49520287	33	2.1	34	92	2	119	38	6	13	40	1.72
49520853--49520980	64	2.0	64	95	0	229	28	17	15	38	1.91
49530628--49530671	20	2.2	20	84	15	56	27	4	11	56	1.53
49534464--49534525	23	2.7	23	75	9	63	37	20	6	35	1.79
49539214--49539275	23	2.7	23	82	5	72	38	24	6	30	1.80
49540985--49541021	13	2.9	13	92	4	58	51	13	5	29	1.63
49554449--49554507	20	3.0	21	78	12	61	28	11	37	22	1.89
49555997--49556054	29	2.0	30	83	10	75	63	5	20	10	1.44
49560867--49560902	12	3.0	12	87	0	54	27	5	2	63	1.30
49570330--49570370	20	2.0	20	90	0	64	46	12	12	29	1.77
49587834--49587860	12	2.2	12	100	0	54	51	7	0	40	1.30
49588307--49588432	28	4.5	28	88	2	173	28	12	26	32	1.93
49588307--49588432	55	2.2	57	87	2	175	28	12	26	32	1.93
49588337--49588445	28	4.0	27	90	3	130	30	11	23	33	1.91
49590545--49590662	41	2.9	41	85	1	137	35	15	18	30	1.92
49591636--49591675	19	2.1	19	100	0	80	15	30	30	25	1.95
49592159--49592203	21	2.1	21	95	0	81	42	8	11	37	1.72
49593461--49593598	66	2.1	65	80	8	145	40	16	26	15	1.89
49593970--49594000	15	2.1	15	93	0	53	22	25	25	25	2.00
49593989--49594132	43	3.4	43	81	2	157	24	16	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49594441--49594496	22	2.5	22	83	8	69	42	1	5	50	1.35
49595422--49595477	29	2.0	28	82	3	67	26	16	3	53	1.59
49595416--49595576	60	2.7	60	82	3	182	24	16	9	49	1.75
49605073--49605131	29	2.0	29	96	0	109	35	25	6	32	1.82
49612617--49612668	23	2.3	23	82	0	68	19	5	23	51	1.67
49612862--49612913	21	2.6	19	81	9	59	36	3	11	48	1.58
49616310--49616492	45	4.2	43	81	10	180	34	26	16	22	1.95
49618975--49619003	15	1.9	15	100	0	58	62	0	0	37	0.96
49630222--49630259	19	2.0	19	85	10	51	21	42	0	36	1.53
49632103--49632166	13	4.9	13	84	7	85	35	23	7	32	1.84
49632989--49633116	42	3.0	43	78	12	120	25	15	26	32	1.95
49639869--49639901	11	3.0	11	91	8	50	54	0	3	42	1.15
49640200--49640243	20	2.2	20	87	0	61	9	2	9	79	1.02
49640555--49640593	15	2.5	16	84	15	55	43	2	0	53	1.14
49641900--49642057	79	2.0	79	97	0	298	31	11	25	32	1.91
49644429--49644550	42	2.9	42	95	1	210	53	13	13	18	1.73
49644429--49644552	21	6.0	21	77	9	137	53	13	14	18	1.73
49649529--49649577	21	2.4	20	83	6	62	61	12	8	18	1.55
49652663--49652736	25	3.0	25	84	7	105	27	20	20	32	1.97
49652890--49652945	30	1.9	28	82	13	69	42	7	19	30	1.78
49657130--49657264	49	2.8	49	91	0	216	25	24	20	29	1.99
49657129--49657417	49	5.7	49	79	8	156	24	26	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49657699--49657743	23	2.0	23	90	0	72	2	31	6	60	1.35
49657685--49657847	66	2.6	61	83	9	227	3	26	9	61	1.41
49657715--49657860	38	4.1	37	77	19	148	3	23	8	63	1.39
49657767--49657814	5	9.0	5	82	8	51	2	20	4	72	1.11
49657706--49657855	66	2.3	66	95	0	273	2	24	8	64	1.34
49657794--49657870	38	2.2	35	81	11	86	5	22	11	61	1.50
49657706--49657881	66	2.7	66	86	3	167	3	23	10	61	1.44
49658204--49658318	42	2.9	39	76	14	128	22	7	26	42	1.81
49660651--49660783	47	2.8	48	79	15	152	45	3	3	48	1.33
49660679--49660747	24	2.9	24	72	10	70	49	4	2	43	1.37
49660766--49660806	15	2.5	17	85	14	52	43	2	0	53	1.13
49660807--49661118	61	5.1	65	64	22	176	41	1	6	50	1.40
49660765--49661174	120	3.4	120	94	2	702	42	1	5	50	1.36
49660890--49660941	15	3.6	15	80	12	56	44	0	1	53	1.11
49661123--49661171	15	2.9	18	80	20	61	44	0	0	55	0.99
49661123--49661177	15	3.4	16	80	16	53	43	0	1	54	1.10
49661321--49661411	45	2.0	45	85	2	121	37	28	6	27	1.82
49661392--49661444	16	3.2	16	94	5	97	37	37	0	24	1.56
49665938--49665991	21	2.6	21	82	5	65	40	31	14	12	1.84
49672697--49672725	14	2.1	14	100	0	58	58	6	20	13	1.58
49679784--49679835	26	2.0	26	96	0	95	44	7	11	36	1.70
49681617--49681642	12	2.2	12	100	0	52	7	15	30	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49681739--49682020	41	6.9	41	85	0	350	23	21	26	28	1.99
49686921--49686950	13	2.3	13	100	0	60	26	13	6	53	1.64
49687957--49688008	26	2.0	26	100	0	104	42	7	11	38	1.70
49689112--49689234	43	2.8	43	78	1	111	25	16	28	30	1.96
49689629--49689680	26	2.0	26	100	0	104	42	7	11	38	1.70
49690785--49690907	43	2.8	43	78	1	111	25	16	28	30	1.96
49691301--49691352	26	2.0	26	100	0	104	42	7	11	38	1.70
49692458--49692544	43	2.0	43	84	0	111	24	16	28	31	1.96
49692975--49693026	26	2.0	26	100	0	104	42	7	11	38	1.70
49695224--49695376	28	5.8	27	70	21	101	35	0	3	59	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208