genome.fa.s18.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  32  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12618066--12618108	18	2.4	18	84	7	52	16	23	20	39	1.92
12618927--12618959	16	2.1	16	94	0	57	33	0	36	30	1.58
12618904--12618946	21	2.0	21	86	8	61	30	0	37	32	1.58
12618938--12619032	45	2.1	44	88	1	136	34	5	27	32	1.79
12619194--12619228	18	2.0	17	88	5	52	54	0	0	45	0.99
12619152--12619224	27	2.7	27	76	8	76	52	2	0	45	1.15
12619113--12619384	144	1.9	147	93	3	478	47	2	2	47	1.29
12619338--12619372	18	2.0	17	88	5	52	54	0	0	45	0.99
12619358--12619536	55	3.1	54	64	22	128	49	7	2	41	1.43
12619353--12619543	61	3.2	61	68	14	178	49	6	2	41	1.43
12619324--12619543	120	1.8	120	97	0	413	49	5	2	42	1.39
12619458--12619492	18	2.0	17	88	5	52	60	0	0	40	0.97
12619533--12619579	17	2.9	16	78	18	53	46	2	6	44	1.40
12619552--12619585	17	2.0	17	94	0	59	50	0	5	44	1.26
12619618--12619812	93	2.1	92	87	4	277	46	4	4	44	1.43
12632056--12632085	8	3.8	8	100	0	60	36	23	13	26	1.92
12632058--12632093	16	2.2	16	90	0	54	44	22	8	25	1.80
12641680--12641925	124	2.0	123	83	7	311	32	16	18	32	1.93
12644818--12644855	19	2.0	19	89	0	58	23	28	23	23	1.99
12658437--12658485	25	2.0	25	87	0	71	30	2	18	48	1.59
12661825--12661849	3	8.3	3	100	0	50	68	0	0	32	0.90
12667848--12667887	21	1.9	21	85	10	55	72	0	5	22	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12676252--12676301	20	2.6	18	79	14	55	42	6	8	44	1.58
12676255--12676296	20	2.1	20	86	8	59	45	7	7	40	1.59
12678785--12678815	3	10.3	3	92	0	53	3	0	61	35	1.12
12683403--12683528	36	3.5	36	94	0	207	33	13	23	30	1.93
12683399--12683531	18	7.4	18	85	3	178	33	13	22	30	1.93
12687300--12687345	22	2.0	23	83	4	58	23	2	2	71	1.08
12687565--12687626	28	2.2	29	85	8	83	59	6	9	24	1.52
12687565--12687626	29	2.1	29	85	5	81	59	6	9	24	1.52
12698314--12699234	457	2.0	457	100	0	1842	36	20	13	29	1.90
12702902--12702956	20	2.6	22	75	16	62	61	1	0	36	1.06
12702969--12703017	25	2.0	24	84	4	62	61	2	0	36	1.08
12705331--12705364	15	2.3	15	90	10	52	32	0	2	64	1.08
12719376--12719638	131	2.0	131	99	0	517	33	15	9	40	1.80
12720545--12720613	31	2.2	31	86	0	93	49	5	2	42	1.41
12720881--12720951	23	3.0	23	81	10	81	46	1	2	49	1.25
12720884--12720961	23	3.2	23	80	12	77	47	1	3	47	1.28
12720952--12721121	59	2.9	59	96	0	304	40	5	9	44	1.59
12745290--12745320	6	5.2	6	96	0	53	16	19	35	29	1.93
12747466--12747495	3	10.0	3	100	0	60	0	33	0	66	0.92
12751920--12751972	24	2.2	24	93	0	88	16	24	20	37	1.93
12751920--12752000	24	3.3	25	84	6	87	16	23	20	39	1.92
12753465--12753603	46	3.0	46	88	2	208	28	25	10	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12754077--12754188	46	2.4	46	93	0	197	32	8	30	28	1.88
12754537--12754630	46	2.0	46	87	0	134	32	26	6	34	1.82
12757840--12757899	29	2.1	29	87	6	88	25	0	6	68	1.14
12772933--12772987	28	2.0	27	85	3	74	40	20	5	34	1.75
12772952--12772991	21	1.9	21	89	0	62	40	17	5	37	1.72
12780733--12780779	16	2.8	17	83	6	60	40	0	0	59	0.97
12780763--12780848	11	8.4	11	75	14	78	41	1	1	55	1.14
12780751--12780850	38	2.6	38	82	7	103	43	1	1	55	1.13
12780794--12780827	17	2.0	17	94	0	59	38	0	0	61	0.96
12780744--12780841	49	2.0	47	90	3	151	41	1	1	56	1.13
12783331--12783421	39	2.4	38	79	3	103	25	5	19	49	1.70
12794169--12794217	20	2.5	20	83	6	64	10	36	16	36	1.82
12795036--12795120	38	2.3	38	87	4	120	32	8	3	55	1.47
12795219--12795371	55	2.9	56	80	7	185	36	15	10	37	1.82
12795634--12795676	16	2.8	16	92	3	70	39	0	2	58	1.11
12798547--12798725	84	2.1	84	98	1	349	19	40	7	32	1.80
12812177--12812425	50	4.8	50	82	5	284	20	29	24	26	1.99
12812176--12812425	100	2.4	105	86	6	341	20	29	24	26	1.99
12812520--12812551	13	2.5	13	94	0	55	56	12	0	31	1.37
12812763--12812820	30	1.9	30	89	0	89	31	24	3	41	1.71
12819302--12819368	31	2.2	31	86	0	89	43	11	14	29	1.82
12819309--12819377	31	2.2	31	89	0	102	42	11	15	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12827359--12827401	18	2.4	18	88	7	61	48	0	0	51	1.00
12832111--12832140	3	10.0	3	100	0	60	33	0	0	66	0.92
12833587--12833645	28	2.1	27	87	12	84	27	1	8	62	1.33
12836036--12836084	3	16.3	3	86	0	62	57	0	8	34	1.29
12840342--12840400	29	2.0	29	100	0	118	23	23	6	45	1.76
12844064--12844234	95	1.8	94	85	6	240	38	23	13	24	1.91
12846292--12846331	16	2.5	16	84	11	55	55	0	0	45	0.99
12848625--12848671	24	2.0	24	95	0	85	36	12	31	19	1.89
12858462--12858502	21	2.0	21	85	0	55	31	19	4	43	1.72
12863767--12863813	21	2.2	22	92	3	78	21	38	19	21	1.94
12867414--12867472	29	2.0	30	86	3	84	49	16	5	28	1.67
12867598--12867628	13	2.4	13	94	0	53	51	0	3	45	1.17
12869680--12869722	19	2.3	18	80	11	50	55	0	4	39	1.20
12870335--12870378	4	11.0	4	95	0	79	25	2	25	47	1.63
12871123--12871162	18	2.2	18	86	8	55	52	5	2	40	1.37
12875157--12875203	5	9.2	5	86	4	67	40	19	2	38	1.63
12877028--12877072	21	2.1	22	84	12	58	66	8	11	13	1.44
12882754--12882781	12	2.3	12	100	0	56	78	0	0	21	0.75
12882745--12882789	22	2.0	22	91	0	72	68	0	0	31	0.89
12882752--12882915	38	4.2	37	88	6	211	62	0	1	35	1.06
12882803--12882867	11	6.4	11	75	21	54	60	0	3	36	1.13
12882826--12882886	8	6.9	8	75	17	50	65	0	1	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12882740--12882915	10	18.2	10	72	23	80	61	0	1	36	1.06
12888640--12888673	17	1.9	18	88	5	52	35	2	0	61	1.11
12892603--12892652	25	2.0	24	85	11	66	68	6	0	26	1.13
12901463--12901547	41	2.1	41	80	2	100	23	17	27	31	1.97
12903508--12903552	3	15.0	3	100	0	90	33	0	0	66	0.92
12906370--12906413	22	1.9	22	86	9	61	56	4	0	38	1.20
12906397--12906563	85	2.0	85	87	1	246	34	7	16	40	1.78
12906572--12906727	43	3.6	43	82	6	192	25	19	32	23	1.98
12910218--12910310	18	5.2	18	85	0	105	29	21	15	34	1.94
12910218--12910310	36	2.6	36	87	0	132	29	21	15	34	1.94
12917237--12917283	16	2.8	17	81	15	53	72	6	2	19	1.17
12924812--12924855	22	2.0	21	87	12	63	40	0	2	56	1.11
12928056--12928091	18	1.9	18	88	5	54	58	2	0	38	1.13
12941628--12941668	21	2.0	21	90	0	64	19	29	21	29	1.98
12959246--12959282	19	2.1	18	90	10	58	29	0	8	62	1.24
12966142--12966311	40	4.3	40	85	0	207	24	30	21	23	1.99
12967874--12967975	41	2.5	41	90	3	152	27	19	25	27	1.99
12972876--12972904	3	9.7	3	100	0	58	0	31	0	68	0.89
12978345--12978403	22	2.7	21	79	10	55	64	11	16	6	1.47
12986120--12986145	7	3.7	7	100	0	52	42	26	15	15	1.87
12994481--12994590	55	2.0	54	92	1	184	39	11	9	40	1.74
12994493--12994599	54	2.0	55	90	5	173	37	13	8	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12995300--12995355	13	4.5	12	78	12	51	30	0	1	67	1.01
12998600--12998739	46	3.0	45	90	4	217	29	29	7	33	1.85
12999967--13000014	17	2.9	17	87	3	62	52	18	0	29	1.46
13000177--13000257	21	3.9	21	72	6	74	22	19	14	43	1.88
13000179--13000299	42	2.9	42	81	0	125	19	23	16	39	1.92
13005845--13005898	25	2.2	26	83	6	67	62	7	3	25	1.38
13035067--13035328	128	2.1	126	84	4	330	42	17	14	24	1.88
13037337--13037405	22	3.1	22	91	0	111	31	27	0	40	1.57
13037358--13037457	52	1.9	52	85	0	137	32	30	1	37	1.64
13037495--13037550	29	2.0	29	89	10	89	39	0	1	58	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208