genome.fa.s18.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  138  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44977055--44977248	95	2.0	95	97	0	370	27	22	20	29	1.98
44977284--44977479	97	2.0	95	96	1	356	28	21	18	30	1.97
44977045--44977540	231	2.2	229	94	2	865	29	22	18	29	1.98
44977492--44978303	88	9.3	89	79	5	717	29	25	16	28	1.97
44977505--44978275	132	5.9	132	84	3	686	29	25	16	29	1.97
44977558--44978302	219	3.4	217	88	3	1046	29	25	16	28	1.97
44977492--44978277	351	2.2	351	90	2	1213	29	25	16	28	1.97
44978781--44978976	108	1.8	108	90	0	320	46	10	17	25	1.80
44979310--44979363	21	2.6	22	85	11	78	3	16	0	79	0.87
44979315--44979374	26	2.3	25	83	13	77	3	15	1	80	0.93
44986727--44986761	4	8.8	4	100	0	70	51	0	0	48	1.00
44991795--44991930	56	2.4	56	79	3	132	31	26	18	23	1.97
44993513--44993618	36	2.9	36	85	0	131	20	18	17	42	1.89
44995983--44996190	40	5.2	40	92	0	310	25	28	21	24	1.99
44995984--44996243	80	3.3	80	86	2	265	26	27	21	24	1.99
44995984--44996243	120	2.2	119	82	3	308	26	27	21	24	1.99
45000881--45000923	22	2.0	22	86	9	61	41	13	9	34	1.77
45010330--45010371	21	2.0	21	86	13	61	26	16	19	38	1.92
45012145--45012196	25	2.1	24	85	3	68	44	1	1	51	1.23
45017506--45017563	27	2.1	28	87	3	82	25	12	12	50	1.74
45025055--45025105	23	2.2	23	86	6	68	41	17	11	29	1.85
45027812--45027837	13	2.0	13	100	0	52	23	23	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45027299--45028337	524	2.0	524	95	0	1889	30	18	21	28	1.97
45028850--45028886	15	2.4	16	82	17	51	40	0	0	59	0.97
45035369--45035555	68	2.7	69	91	1	295	41	16	15	26	1.88
45039066--45039184	28	4.3	28	83	2	134	31	22	24	21	1.99
45039510--45039622	27	4.2	27	84	4	131	21	15	18	45	1.86
45039510--45039613	53	1.9	54	84	5	140	22	15	18	44	1.87
45041627--45041808	28	6.5	28	96	0	303	32	28	12	26	1.93
45044944--45045125	28	6.5	28	95	0	303	32	28	12	26	1.92
45047611--45047674	27	2.4	27	91	0	101	21	25	29	23	1.99
45047828--45047856	14	2.1	14	100	0	58	51	6	0	41	1.28
45064742--45064796	28	2.0	28	92	0	92	30	16	27	25	1.96
45066867--45067128	39	6.7	40	88	7	337	24	27	22	25	2.00
45074431--45074692	39	6.7	40	87	7	319	25	27	22	25	2.00
45091186--45091316	69	1.9	69	82	3	165	39	17	15	27	1.90
45091304--45091402	34	2.9	34	79	11	112	44	20	11	24	1.83
45091304--45091402	35	2.9	33	83	5	117	44	20	11	24	1.83
45092083--45092194	42	2.7	41	78	10	118	32	24	15	28	1.95
45109004--45109042	20	2.0	20	90	10	62	56	5	23	15	1.59
45116588--45116615	12	2.3	12	100	0	56	17	17	7	57	1.62
45116921--45117058	50	2.8	48	88	8	195	21	31	21	26	1.98
45119488--45119540	21	2.5	21	81	0	70	35	9	32	22	1.86
45119517--45119553	18	2.1	18	89	0	56	54	5	24	16	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45128270--45128340	29	2.4	30	88	2	99	42	14	25	18	1.87
45130355--45130383	14	2.1	14	100	0	58	51	13	6	27	1.66
45139098--45139144	17	2.6	17	83	6	58	42	2	2	53	1.25
45139098--45139141	19	2.4	19	85	7	56	43	2	2	52	1.26
45141166--45141215	24	2.1	24	85	7	66	52	0	2	46	1.12
45143525--45143549	13	1.9	13	100	0	50	88	0	0	12	0.53
45144389--45144644	44	6.0	43	67	13	141	23	23	21	31	1.98
45144761--45145091	87	3.8	87	90	0	518	25	21	22	30	1.99
45146395--45146427	8	4.2	8	96	3	59	0	12	0	87	0.53
45146395--45146432	14	2.6	14	91	4	58	0	13	0	86	0.56
45151604--45151781	27	6.6	27	82	3	178	29	28	15	26	1.96
45151630--45151780	82	1.9	81	88	4	232	28	28	15	27	1.96
45162813--45162861	25	2.0	25	83	0	62	30	18	14	36	1.90
45168109--45168151	14	2.9	15	79	6	52	58	0	2	39	1.11
45170442--45170512	26	2.7	26	86	0	97	30	18	9	40	1.83
45176496--45176556	25	2.4	26	86	8	81	34	13	14	37	1.85
45186948--45186986	14	2.7	14	84	4	51	58	2	2	35	1.25
45187427--45187488	31	2.0	31	81	6	72	58	4	9	27	1.50
45188627--45188674	13	3.8	13	75	5	53	29	0	0	70	0.87
45188625--45188677	25	2.1	25	89	10	81	26	0	0	73	0.83
45188638--45188677	16	2.6	16	80	4	55	25	0	0	75	0.81
45188624--45188677	23	2.2	26	83	9	78	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45188877--45188925	18	2.7	18	93	0	89	10	16	2	71	1.22
45190892--45191123	50	4.6	50	86	0	311	26	21	30	21	1.98
45193907--45194143	63	3.8	63	77	5	203	27	21	25	25	2.00
45203732--45203784	23	2.3	23	93	3	90	32	43	7	16	1.76
45207068--45207140	22	3.3	22	84	0	83	35	6	16	41	1.75
45207078--45207152	22	3.4	21	81	7	87	33	6	14	45	1.71
45207420--45207470	27	2.0	26	84	7	68	27	31	23	17	1.97
45207504--45207536	14	2.4	14	100	0	66	27	30	18	24	1.98
45208104--45208162	23	2.5	24	86	2	84	32	13	13	40	1.84
45208908--45208950	2	21.5	2	100	0	86	0	0	48	51	1.00
45214717--45214750	17	1.9	18	88	5	52	41	11	8	38	1.73
45214800--45214836	14	2.6	14	86	0	56	35	2	24	37	1.70
45215427--45215484	27	2.1	27	93	0	98	15	12	44	27	1.82
45229891--45230136	134	1.8	135	83	6	329	40	13	13	32	1.83
45229909--45230175	134	2.0	133	78	7	281	40	13	11	33	1.81
45231466--45231512	24	1.9	25	86	4	69	65	8	4	21	1.37
45235029--45235075	19	2.4	20	80	20	55	17	6	0	76	0.98
45235470--45235522	26	2.0	26	89	7	81	58	13	7	20	1.59
45236655--45236806	66	2.3	65	79	6	162	32	18	21	27	1.97
45241217--45241242	12	2.2	12	100	0	52	26	7	30	34	1.85
45241306--45241333	6	4.7	6	100	0	56	35	0	14	50	1.43
45257003--45257045	22	2.0	22	81	9	52	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45257304--45257350	24	1.9	25	86	4	69	38	2	0	59	1.09
45257303--45257353	13	4.1	13	75	10	52	39	1	0	58	1.09
45259697--45259744	21	2.3	21	77	0	51	10	22	8	58	1.58
45262911--45263553	46	13.6	46	86	7	789	33	15	22	29	1.94
45268446--45268732	40	7.2	40	91	2	398	22	19	27	29	1.98
45270847--45271153	146	2.1	147	88	4	451	43	4	10	42	1.57
45271535--45271911	125	3.0	125	85	2	542	29	16	22	31	1.96
45273926--45274169	121	2.0	121	95	0	443	28	11	20	38	1.88
45289468--45289636	45	3.6	45	80	10	214	49	12	0	38	1.41
45289499--45289581	25	3.3	25	96	0	148	43	14	0	42	1.45
45290055--45290094	18	2.2	18	90	0	62	42	7	27	22	1.80
45291999--45292071	11	6.5	11	75	24	73	43	2	27	26	1.68
45291999--45292071	22	3.3	23	88	9	107	43	2	27	26	1.68
45292001--45292068	33	2.1	33	83	10	86	44	2	27	25	1.68
45295324--45295395	9	7.9	9	81	9	74	38	31	8	20	1.83
45295324--45295370	17	2.7	18	83	6	60	40	27	10	21	1.86
45295359--45295406	20	2.4	20	92	0	78	43	31	4	20	1.71
45295368--45295411	11	4.2	11	82	11	56	50	29	2	18	1.59
45301986--45302037	19	2.7	20	76	11	54	57	9	0	32	1.31
45312297--45312347	13	3.9	13	77	10	59	37	0	1	60	1.08
45312561--45312614	20	2.8	19	75	10	56	70	0	29	0	0.88
45314282--45314308	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45323245--45323375	44	3.0	44	90	2	210	25	17	26	29	1.97
45323246--45323591	88	4.0	85	80	7	250	29	20	24	26	1.99
45323340--45323579	87	2.7	88	87	1	313	29	21	23	25	1.99
45323369--45323579	44	4.8	44	79	3	246	30	21	23	24	1.99
45323610--45323885	85	3.2	85	73	8	304	30	19	24	26	1.98
45323622--45323969	174	2.0	173	96	0	642	29	19	24	26	1.98
45323655--45323924	85	3.1	85	72	8	292	29	19	25	25	1.99
45323508--45324054	44	12.6	44	68	8	208	30	19	22	27	1.98
45332621--45332765	45	3.2	45	82	1	175	22	20	14	42	1.88
45332972--45333186	109	2.0	109	97	0	403	43	19	2	35	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208