genome.fa.s18.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  113  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37027971--37028141	20	8.9	19	64	22	65	31	1	5	60	1.30
37028020--37028186	19	9.0	18	70	20	96	31	1	5	61	1.29
37028347--37028539	19	10.3	18	72	17	108	32	0	5	62	1.21
37028338--37028539	9	21.8	9	74	14	137	31	0	4	62	1.23
37028338--37028539	47	4.3	47	73	17	147	31	0	4	62	1.23
37028810--37028855	24	1.9	24	90	0	74	69	2	0	28	1.00
37028962--37028996	15	2.2	16	90	5	54	31	0	0	68	0.90
37028904--37028997	20	5.2	17	69	21	66	34	2	2	61	1.20
37054880--37054917	13	2.7	14	84	12	51	15	0	7	76	1.01
37055281--37055403	44	2.8	44	86	4	151	32	22	17	26	1.97
37055379--37055531	41	3.5	41	70	20	130	33	16	16	32	1.92
37055379--37055683	95	3.3	92	85	4	393	31	17	16	34	1.93
37055515--37055818	51	6.4	50	69	15	182	31	18	16	33	1.93
37055598--37055859	137	1.9	137	90	1	418	29	21	16	32	1.95
37055983--37056146	44	3.5	44	72	18	159	30	21	20	28	1.98
37055974--37056181	98	2.1	98	92	3	348	27	21	19	31	1.97
37055559--37056146	143	4.2	141	79	6	543	29	21	18	31	1.97
37055843--37056297	241	1.9	241	86	0	658	28	23	19	29	1.98
37055974--37056244	98	2.8	98	86	3	332	28	21	19	29	1.98
37062815--37062926	41	2.7	41	85	0	152	29	19	19	31	1.97
37072576--37072639	23	2.7	24	74	18	62	40	0	0	59	0.97
37073061--37073120	4	14.8	4	73	16	52	3	23	0	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37073058--37073130	10	8.1	9	75	17	55	4	21	0	73	0.99
37073066--37073120	22	2.8	18	75	21	56	3	23	0	72	1.00
37073058--37073132	15	5.1	14	75	23	66	4	22	0	73	1.00
37073599--37073642	13	3.1	14	78	15	54	54	0	0	45	0.99
37073605--37073641	16	2.3	16	86	13	58	59	0	0	40	0.97
37073661--37073730	15	4.6	15	72	19	56	50	1	1	47	1.19
37078533--37078665	43	3.1	43	85	2	151	24	18	24	31	1.98
37078558--37078690	43	3.1	42	85	4	151	24	19	21	33	1.97
37082402--37082457	28	2.0	28	100	0	112	32	14	14	39	1.86
37084554--37084833	9	30.8	9	79	2	308	32	2	16	48	1.58
37084862--37084905	8	5.0	8	80	20	52	29	0	11	59	1.32
37084855--37084937	20	4.2	20	83	11	91	32	0	10	56	1.34
37084937--37084999	9	6.7	9	75	10	63	34	4	15	44	1.68
37084554--37084985	27	15.7	27	79	9	286	32	2	15	50	1.55
37084912--37085111	107	1.8	107	88	6	301	36	3	11	48	1.57
37085013--37085048	12	3.0	12	95	0	63	27	0	8	63	1.23
37085228--37085265	16	2.4	16	86	4	51	55	5	0	39	1.23
37085262--37085289	13	2.2	13	100	0	56	46	7	7	39	1.59
37085258--37085307	17	3.2	17	81	18	72	52	6	6	36	1.51
37085199--37085354	62	2.6	60	81	10	151	51	7	5	35	1.55
37086292--37086346	30	1.9	29	82	10	69	58	9	3	29	1.46
37088733--37088800	36	1.9	35	84	3	91	36	44	1	17	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37088738--37088807	14	5.0	14	69	10	54	37	44	1	17	1.57
37088738--37088807	28	2.5	28	80	11	72	37	44	1	17	1.57
37088968--37089030	15	4.4	15	76	11	69	30	49	1	19	1.58
37088994--37089029	7	5.0	7	86	6	54	30	44	0	25	1.54
37088960--37089060	42	2.4	42	80	3	114	35	41	0	21	1.60
37088694--37089114	233	1.8	232	85	6	591	40	31	3	24	1.71
37089721--37090023	114	2.6	113	77	5	313	31	22	17	29	1.96
37090585--37090632	21	2.3	21	88	0	69	0	43	20	35	1.52
37096149--37096206	25	2.3	26	85	11	84	43	3	31	22	1.70
37098220--37098252	17	1.9	17	100	0	66	12	30	12	45	1.78
37104151--37104210	3	20.7	3	75	13	54	66	3	1	28	1.17
37105231--37105284	17	3.2	17	70	15	58	11	7	38	42	1.68
37105208--37105284	33	2.4	34	87	10	108	11	7	40	40	1.71
37105793--37106072	44	6.4	43	91	2	377	26	24	21	27	1.99
37107345--37107381	7	5.1	7	93	6	65	16	13	0	70	1.17
37107345--37107381	15	2.6	14	95	4	65	16	13	0	70	1.17
37113027--37113089	3	21.7	3	73	12	51	65	3	3	28	1.24
37113014--37113087	22	3.2	24	71	23	59	64	4	2	28	1.25
37113017--37113089	21	3.2	21	75	19	58	64	4	2	28	1.26
37113023--37113089	30	2.2	31	84	10	86	65	2	2	28	1.22
37117725--37117752	3	9.3	3	100	0	56	64	0	0	35	0.94
37121759--37121798	17	2.4	17	87	8	55	22	0	20	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37122519--37122725	83	2.5	82	80	9	240	29	21	22	25	1.99
37122520--37122725	43	4.9	42	85	7	242	29	21	22	25	1.99
37123146--37123205	12	5.2	12	72	11	54	1	36	20	41	1.62
37123170--37123259	21	4.3	21	85	0	108	4	40	18	36	1.71
37128873--37129022	55	2.8	54	80	4	149	26	15	29	28	1.96
37128845--37129022	27	6.6	27	77	6	146	25	15	28	30	1.96
37128846--37129001	82	1.9	81	81	6	190	25	16	28	30	1.96
37136876--37137025	55	2.8	54	80	4	149	26	15	29	28	1.96
37136848--37137025	27	6.6	27	77	6	146	25	15	28	30	1.96
37136849--37137004	82	1.9	81	81	6	190	25	16	28	30	1.96
37139927--37140177	9	29.8	9	71	12	140	29	3	20	45	1.68
37139916--37140119	25	8.1	25	78	3	176	30	3	21	44	1.70
37139930--37140017	34	2.5	35	78	10	92	28	3	23	44	1.70
37139916--37140119	50	4.0	50	82	1	210	30	3	21	44	1.70
37139988--37140176	41	4.8	41	73	15	155	29	3	20	47	1.65
37139987--37140063	16	4.7	16	71	17	68	27	5	20	46	1.72
37140104--37140169	25	2.6	25	85	0	87	30	1	15	53	1.51
37140266--37140320	24	2.2	26	87	6	78	23	0	18	58	1.39
37140112--37140322	94	2.3	93	75	12	211	27	3	16	52	1.59
37140493--37140525	15	2.2	15	94	0	57	54	3	3	39	1.31
37140383--37140768	177	2.2	177	97	0	729	48	5	4	41	1.46
37140670--37140702	15	2.2	15	94	0	57	54	3	3	39	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37142725--37142777	23	2.3	23	83	9	63	35	3	41	18	1.69
37143311--37143363	22	2.5	22	96	3	99	37	26	3	32	1.74
37143324--37143400	15	5.3	14	72	7	55	40	29	1	28	1.65
37143327--37143405	29	2.7	30	82	7	92	39	29	2	29	1.70
37144172--37144313	77	1.9	76	80	7	171	30	19	18	32	1.95
37143958--37144763	259	3.1	266	91	4	1314	28	20	18	31	1.96
37144732--37144972	113	2.1	113	80	5	261	29	21	21	28	1.98
37144811--37145121	113	2.8	113	82	3	340	29	19	23	28	1.98
37146469--37146522	22	2.5	21	77	11	56	44	1	1	51	1.22
37147989--37148033	22	2.1	22	87	4	65	13	13	15	57	1.65
37148000--37148043	22	2.0	22	86	0	61	18	18	11	52	1.74
37148241--37148274	15	2.2	16	89	5	52	55	0	0	44	0.99
37148724--37148771	21	2.1	21	85	11	60	56	0	2	41	1.11
37149133--37149181	3	16.3	3	100	0	98	0	32	0	67	0.91
37151825--37151859	13	2.7	13	86	0	52	40	2	0	57	1.14
37154087--37154174	40	2.2	41	83	4	115	29	2	11	56	1.46
37154158--37154290	36	3.8	34	74	9	106	18	9	11	60	1.58
37154225--37154290	34	1.9	34	93	0	114	18	9	9	63	1.49
37157799--37157839	20	2.1	20	86	13	59	56	2	9	31	1.45
37160079--37160118	20	2.0	21	90	5	64	37	0	2	60	1.11
37165012--37165074	28	2.2	28	88	0	90	36	17	26	19	1.94
37168199--37168226	14	2.0	14	100	0	56	57	7	14	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37170848--37170987	70	2.0	71	93	6	241	38	1	7	52	1.40
37170906--37171249	89	3.9	89	93	1	584	36	1	6	55	1.34
37171139--37171181	9	4.4	9	78	16	50	23	0	2	74	0.93
37171136--37171181	12	3.8	12	79	0	56	23	0	2	73	0.94
37170906--37171249	179	1.9	176	92	1	580	36	1	6	55	1.34
37171764--37171920	78	2.0	78	100	0	314	36	16	20	26	1.94
37172701--37172876	41	4.3	41	80	4	212	33	23	16	26	1.96
37172701--37172875	81	2.1	82	87	3	246	33	24	16	26	1.95
37176132--37176271	41	3.4	41	91	1	219	39	12	24	24	1.89
37181285--37181423	41	3.4	41	92	1	226	39	12	23	24	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208