genome.fa.s18.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  143  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46616770--46616841	30	2.5	28	78	10	83	19	27	26	26	1.99
46624106--46624144	11	3.5	11	89	0	60	23	7	46	23	1.78
46634747--46634785	11	3.5	11	85	0	51	30	2	38	28	1.70
46645438--46645542	23	4.6	23	81	2	122	15	17	21	45	1.85
46649244--46649281	16	2.4	16	95	0	67	44	23	18	13	1.85
46650771--46650971	83	2.4	82	84	4	251	38	8	19	32	1.83
46651040--46651215	82	2.1	83	86	3	239	39	7	19	32	1.81
46664089--46664142	28	2.0	27	92	3	90	37	14	27	20	1.92
46665955--46666134	57	3.1	58	84	8	242	47	6	16	30	1.72
46672857--46673101	27	9.1	27	83	5	298	43	18	20	17	1.89
46674294--46674336	18	2.4	18	88	3	61	48	11	23	16	1.78
46679802--46679844	13	3.3	13	96	0	77	32	4	11	51	1.59
46679939--46680131	50	3.8	50	84	0	251	27	22	29	20	1.98
46682253--46682482	27	8.5	27	88	0	309	42	18	20	18	1.89
46682748--46682858	28	3.9	28	93	2	177	27	23	22	27	2.00
46682748--46682858	58	1.9	56	90	3	177	27	23	22	27	2.00
46683141--46683203	32	2.0	32	93	0	108	36	4	25	33	1.77
46696852--46696881	15	2.0	15	93	0	51	20	10	0	70	1.16
46698705--46698842	73	1.9	73	83	0	177	22	22	27	27	1.99
46703110--46703142	16	2.1	16	94	0	57	33	0	36	30	1.58
46703121--46703215	45	2.1	44	88	1	136	34	5	27	32	1.79
46703377--46703411	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46703335--46703407	27	2.7	27	76	8	76	52	2	0	45	1.15
46703513--46703554	17	2.5	17	85	14	52	54	0	0	45	0.99
46703520--46703554	18	2.0	17	88	5	52	54	0	0	45	0.99
46703296--46703566	143	1.9	147	93	4	478	46	3	2	46	1.34
46703720--46703766	17	2.9	16	78	18	53	46	2	6	44	1.40
46703739--46703772	17	2.0	17	94	0	59	50	0	5	44	1.26
46703805--46703998	92	2.1	91	88	5	284	46	4	4	44	1.41
46705401--46705427	11	2.5	11	100	0	54	51	18	7	22	1.70
46712334--46712395	26	2.4	26	91	0	97	33	11	11	43	1.76
46712334--46712417	26	3.3	26	86	1	80	30	13	11	44	1.79
46717397--46717541	50	2.9	50	82	7	177	30	26	15	27	1.96
46717397--46717527	51	2.6	51	85	6	169	31	27	15	25	1.96
46719630--46719722	28	3.2	28	64	14	71	25	25	13	34	1.94
46719624--46719721	32	3.2	32	63	14	80	24	25	13	36	1.92
46720177--46720212	17	2.0	19	89	10	58	58	5	2	33	1.36
46720981--46721372	59	6.6	59	89	2	590	25	26	14	34	1.93
46721279--46721371	31	3.3	27	69	14	69	26	25	11	35	1.91
46724762--46724787	12	2.2	12	100	0	52	34	15	7	42	1.75
46724780--46724814	18	1.9	18	88	0	52	40	8	0	51	1.33
46725366--46725404	21	1.9	21	89	5	62	20	10	2	66	1.33
46726279--46726323	23	2.0	23	95	0	81	40	20	8	31	1.83
46726280--46726329	23	2.2	23	88	0	73	42	20	10	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46737537--46737667	41	3.1	41	78	5	120	31	25	16	26	1.96
46741721--46741789	26	2.7	26	82	6	88	21	11	26	40	1.87
46743476--46743508	10	3.5	10	88	12	52	39	9	0	51	1.34
46743905--46743977	31	2.5	30	78	12	80	31	8	1	58	1.36
46744129--46744157	14	2.0	15	93	6	51	27	6	3	62	1.37
46753582--46753745	28	5.9	27	77	5	166	26	20	20	33	1.97
46753584--46753745	56	2.9	55	83	3	189	25	19	20	33	1.96
46753579--46753740	84	1.9	84	85	5	220	27	19	20	32	1.97
46754322--46754375	18	3.0	18	81	5	65	53	1	0	44	1.11
46754845--46754943	35	2.8	35	82	0	126	20	21	20	38	1.94
46767761--46768025	40	6.7	40	84	5	277	26	27	21	24	1.99
46767957--46768034	40	1.9	41	82	10	97	26	28	20	24	1.99
46775329--46775593	40	6.7	40	84	5	277	26	27	21	24	1.99
46775525--46775602	40	1.9	41	82	10	97	26	28	20	24	1.99
46789076--46789137	30	2.1	30	96	0	115	29	20	12	37	1.90
46800926--46801066	27	5.3	27	85	0	176	41	23	16	19	1.90
46801431--46801509	27	2.9	28	88	3	106	27	18	18	34	1.95
46811055--46811090	18	2.1	18	89	5	56	36	2	0	61	1.11
46815522--46815582	14	4.5	13	78	15	63	75	3	6	14	1.13
46815552--46815615	15	4.3	14	80	7	56	82	3	9	4	0.91
46815567--46815620	11	4.7	11	78	15	56	85	3	9	1	0.80
46815568--46815662	7	13.6	7	78	15	56	78	3	11	6	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46816537--46816582	8	6.0	8	82	10	60	71	0	13	15	1.14
46816538--46816582	15	3.0	15	86	0	63	71	0	13	15	1.15
46817969--46818109	43	3.3	43	68	13	126	27	26	21	23	1.99
46817925--46818062	44	3.2	44	66	13	113	24	23	26	26	2.00
46817834--46818265	175	2.5	173	87	3	582	26	23	24	25	2.00
46817834--46818275	87	5.0	88	86	3	545	26	23	24	24	2.00
46818321--46818838	44	11.8	43	66	14	157	29	19	24	27	1.98
46818760--46819076	44	7.2	44	67	12	184	27	17	23	31	1.97
46819040--46819254	44	4.9	43	70	7	128	32	16	22	28	1.96
46818491--46819295	132	6.1	132	92	0	1195	28	18	23	29	1.98
46819723--46819762	17	2.4	17	86	0	53	77	2	0	20	0.88
46820928--46820963	18	2.1	18	94	5	65	33	5	0	61	1.19
46835074--46835102	6	4.8	6	100	0	58	51	0	31	17	1.45
46839705--46839842	31	4.5	30	76	7	100	42	21	12	23	1.86
46842268--46842500	116	2.0	116	93	0	394	36	17	23	22	1.94
46846066--46846116	16	3.1	16	83	8	57	27	3	3	64	1.28
46855756--46855796	21	2.0	21	85	9	57	36	19	24	19	1.95
46864919--46865107	50	3.7	50	76	4	171	26	21	28	23	1.99
46871327--46871366	22	1.9	22	85	10	57	55	7	7	30	1.56
46882089--46882221	50	2.5	53	82	10	148	24	17	30	28	1.97
46882526--46882564	20	2.0	20	90	10	62	56	5	23	15	1.59
46899054--46899121	29	2.3	29	85	5	93	27	30	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46898943--46899272	174	1.9	174	96	0	606	30	24	14	29	1.95
46907159--46907226	29	2.3	29	85	5	93	27	30	13	27	1.94
46907048--46907375	174	1.9	174	96	0	602	30	24	14	29	1.95
46907328--46907406	29	2.7	30	82	13	110	30	30	13	25	1.94
46910027--46910059	15	2.1	16	88	5	50	36	0	12	51	1.39
46916592--46916618	14	1.9	14	100	0	54	0	40	0	59	0.98
46917495--46917745	27	9.3	27	87	3	317	43	19	18	18	1.89
46917923--46917974	26	2.0	26	88	0	77	11	21	26	40	1.87
46924280--46924310	14	2.3	14	94	5	55	0	38	0	61	0.96
46925152--46925266	27	4.3	27	84	1	142	40	20	18	20	1.92
46925449--46925519	26	2.7	26	84	0	79	15	26	21	36	1.93
46935201--46935265	25	2.6	25	85	4	78	24	27	20	27	1.99
46938338--46938380	21	2.0	21	90	0	68	20	32	9	37	1.85
46948210--46948371	81	2.0	82	95	1	290	39	10	13	36	1.79
46952192--46952369	27	6.6	27	82	3	178	28	29	15	26	1.96
46952213--46952368	82	1.9	81	85	3	215	28	29	15	26	1.96
46960147--46960324	27	6.6	27	83	2	178	29	28	16	25	1.97
46960168--46960323	82	1.9	81	88	1	231	28	28	16	25	1.97
46965880--46966060	47	3.8	46	76	10	152	34	17	22	25	1.95
46965884--46966060	97	1.9	94	83	5	230	35	16	21	25	1.95
46970183--46970238	28	2.0	28	92	0	94	26	19	10	42	1.84
46970989--46971093	17	6.2	17	75	10	81	32	17	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46970997--46971096	51	1.9	52	87	2	148	33	19	17	31	1.94
46971014--46971133	34	3.6	33	70	10	100	32	19	17	30	1.95
46971036--46971134	34	2.9	34	73	5	101	31	18	18	32	1.95
46971121--46971200	34	2.4	34	84	0	106	28	13	16	41	1.86
46971005--46971135	68	2.0	66	89	3	183	32	18	17	32	1.94
46988561--46988745	79	2.3	82	81	7	220	26	27	22	24	2.00
46988542--46988745	40	5.1	40	80	8	220	25	26	22	25	2.00
46996497--46996697	40	5.1	40	82	8	218	25	27	21	25	1.99
47006469--47006711	50	4.8	50	89	2	362	20	30	22	25	1.99
47009830--47009892	20	3.3	18	81	14	65	34	4	1	58	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208