genome.fa.s18.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  86  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30075689--30075805	47	2.5	49	78	13	113	34	1	2	61	1.20
30075900--30075981	41	2.0	41	100	0	164	17	9	29	43	1.80
30077595--30077645	26	2.0	26	96	0	93	47	3	5	43	1.46
30077593--30077634	12	3.2	13	74	12	50	42	4	4	47	1.45
30082262--30082399	64	2.2	64	94	0	240	42	15	19	22	1.89
30086550--30086589	20	2.1	19	90	9	64	52	0	5	42	1.23
30088542--30088611	16	4.4	16	92	0	95	32	0	34	32	1.58
30088740--30089356	122	5.1	120	96	1	1081	52	3	1	41	1.30
30089214--30089278	18	4.2	16	72	18	57	60	0	1	38	1.07
30089241--30089292	18	2.9	18	85	5	61	57	0	1	40	1.10
30089354--30089392	20	2.0	20	84	0	51	43	2	12	41	1.56
30089647--30089714	17	3.9	17	70	24	61	27	5	7	58	1.48
30094625--30094687	29	2.2	29	88	0	90	15	30	31	22	1.95
30094970--30095018	24	2.0	24	96	0	89	59	18	4	18	1.53
30095676--30095706	15	2.1	15	93	0	53	38	6	16	38	1.74
30096853--30096993	40	3.6	39	78	8	126	25	17	25	31	1.97
30105592--30105650	27	2.2	27	87	0	82	28	3	0	67	1.06
30106759--30106826	16	4.2	16	94	0	118	26	0	33	39	1.57
30106807--30106915	44	2.6	41	78	8	114	31	5	29	33	1.80
30107061--30107095	18	2.0	17	88	5	52	54	0	0	45	0.99
30107044--30107426	120	3.2	120	99	0	757	48	4	2	43	1.37
30107181--30107215	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30107301--30107335	18	2.0	17	88	5	52	54	0	0	45	0.99
30116610--30116642	17	1.9	17	93	0	57	57	9	15	18	1.63
30117527--30117575	21	2.3	21	89	0	71	24	32	8	34	1.85
30117520--30117560	18	2.3	18	86	0	55	21	31	4	41	1.74
30127524--30127811	80	3.6	80	86	0	389	14	29	18	37	1.91
30127523--30127804	40	7.1	40	85	0	350	14	28	18	37	1.91
30132871--30132909	18	2.2	17	86	13	53	33	0	20	46	1.51
30133136--30133256	23	5.3	23	85	4	163	22	20	25	31	1.98
30133135--30133256	46	2.7	46	90	0	199	22	20	25	31	1.98
30144630--30144681	6	8.3	6	89	8	68	21	1	19	57	1.50
30144629--30144678	20	2.6	19	87	6	66	20	2	20	58	1.50
30145196--30145230	13	2.8	12	87	8	52	57	0	5	37	1.23
30145203--30145231	13	2.2	13	100	0	58	48	0	6	44	1.29
30152626--30152686	31	2.0	31	83	6	79	37	16	4	40	1.70
30153044--30153104	31	2.0	31	87	6	88	42	13	9	34	1.77
30153658--30153705	18	2.6	18	76	6	51	64	22	2	10	1.35
30154995--30155061	34	2.0	34	93	0	116	46	23	20	8	1.79
30166797--30166827	16	1.9	16	93	0	53	51	6	19	22	1.69
30167970--30168159	67	2.8	69	85	3	253	44	25	7	22	1.80
30168644--30168685	17	2.6	16	78	17	50	57	9	0	33	1.31
30169303--30169333	9	3.4	9	90	0	53	38	22	12	25	1.90
30170914--30170945	8	4.0	8	95	0	55	12	3	0	84	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30174733--30174764	11	2.9	11	90	0	55	37	6	0	56	1.25
30175836--30175883	18	2.7	17	81	9	60	43	0	14	41	1.45
30176200--30176281	25	3.3	25	74	6	69	37	13	15	32	1.87
30183602--30183700	39	2.5	38	83	8	126	48	28	2	21	1.61
30183773--30183840	9	7.4	9	82	9	75	25	8	25	41	1.84
30186043--30186224	24	7.6	24	74	7	109	31	40	10	17	1.84
30186049--30186224	48	3.7	48	82	3	203	31	39	11	18	1.86
30186049--30186209	72	2.2	72	83	2	198	30	39	11	19	1.86
30187282--30187447	37	4.5	37	98	0	305	25	19	17	37	1.94
30187411--30187678	46	5.6	46	83	11	331	27	22	14	35	1.93
30187454--30187672	52	4.3	52	83	9	290	27	22	14	35	1.93
30187422--30187682	97	2.7	97	93	1	443	28	21	15	34	1.94
30190601--30190684	39	2.2	39	97	0	159	32	27	4	35	1.78
30193198--30193242	18	2.5	18	85	0	72	26	13	4	55	1.57
30193405--30193437	15	2.2	15	89	10	50	39	27	6	27	1.80
30194768--30194813	15	3.1	15	80	17	51	69	0	28	2	1.00
30197240--30197302	24	2.7	24	82	2	74	49	20	6	23	1.72
30199468--30199509	20	2.0	21	86	4	59	35	19	0	45	1.50
30208021--30208053	10	3.4	10	91	8	59	60	0	0	39	0.97
30209646--30209781	25	5.4	24	71	11	78	31	22	26	19	1.98
30212904--30212946	20	2.2	20	91	4	70	60	20	4	13	1.51
30212914--30212952	19	2.1	18	85	4	51	61	17	2	17	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30214309--30214346	20	1.9	19	85	15	51	18	2	0	78	0.86
30219040--30219080	21	2.0	21	85	0	55	7	29	12	51	1.66
30219050--30219091	21	2.0	21	85	0	57	4	28	16	50	1.66
30219928--30219957	13	2.2	14	94	5	53	26	10	10	53	1.66
30227973--30228014	20	2.1	20	95	0	75	42	11	0	45	1.41
30230135--30230228	45	2.1	45	87	0	134	30	23	19	26	1.98
30230230--30230309	26	3.1	26	67	16	76	35	28	12	23	1.91
30230234--30230420	51	3.7	50	75	4	196	32	26	16	25	1.96
30230231--30230416	101	1.8	99	85	5	248	32	26	16	24	1.96
30233011--30233079	25	2.8	25	81	0	93	31	18	28	20	1.96
30233011--30233091	25	3.2	25	79	6	92	30	17	29	22	1.96
30241979--30242022	21	2.1	21	100	0	88	38	11	18	31	1.86
30244991--30245504	154	3.3	152	85	9	605	30	16	22	30	1.96
30245119--30245591	154	3.1	151	87	6	632	30	15	22	31	1.95
30247194--30247286	43	2.2	43	88	3	134	31	29	16	23	1.96
30247475--30247603	43	3.0	43	89	2	190	30	25	17	26	1.98
30247771--30247897	42	3.0	43	87	5	181	29	25	18	26	1.98
30247194--30248069	294	3.0	296	96	1	1595	38	15	10	35	1.82
30249324--30249359	5	7.2	5	100	0	72	80	0	0	19	0.71
30251676--30251722	24	2.0	24	83	8	60	17	34	0	48	1.47
30252131--30252174	11	4.0	11	78	0	52	63	4	0	31	1.14
30252130--30252172	22	2.0	22	90	0	68	60	4	0	34	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30253348--30253384	16	2.3	16	95	0	65	45	18	2	32	1.64
30253462--30253566	53	2.0	52	98	1	201	35	15	15	34	1.89
30253772--30253872	49	2.1	49	84	3	132	32	26	13	26	1.94
30254654--30254876	33	6.4	33	69	22	127	31	26	20	21	1.98
30254676--30254816	33	3.6	39	76	18	141	31	26	19	22	1.98
30254642--30254850	76	2.8	76	91	2	323	31	26	20	21	1.98
30254902--30255040	50	2.8	50	82	3	172	30	28	17	22	1.97
30258458--30258514	29	2.0	29	96	0	105	47	15	10	26	1.78
30259795--30259829	15	2.3	15	100	0	70	11	28	22	37	1.89
30260306--30260424	41	2.9	41	83	2	157	31	29	17	21	1.96
30260955--30261062	56	1.9	58	82	3	139	47	8	16	27	1.75
30260939--30261076	56	2.4	54	77	10	132	50	7	15	26	1.71
30261631--30261666	18	2.0	18	88	0	54	25	2	0	72	0.98
30266135--30266177	22	2.0	22	85	0	59	55	9	13	20	1.66
30269038--30269077	9	4.6	9	84	6	55	62	2	0	35	1.09
30270611--30270663	23	2.3	24	75	24	60	45	0	13	41	1.43
30272418--30272452	8	4.1	8	89	10	52	71	0	5	22	1.07
30285932--30285982	24	2.1	24	92	0	84	33	5	15	45	1.71
30288853--30288903	16	3.2	17	84	13	56	25	3	1	68	1.17
30288878--30288911	3	11.3	3	100	0	68	32	0	0	67	0.91
30293135--30293206	9	7.6	9	76	17	74	81	4	1	12	0.89
30293135--30293206	17	3.8	18	76	18	74	81	4	1	12	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30294020--30294062	15	2.8	16	80	16	54	76	0	13	9	1.01
30294147--30294186	21	1.9	21	94	0	71	30	12	35	22	1.91
30295247--30295784	46	11.7	46	91	0	851	26	16	27	29	1.97
30295793--30297289	132	11.4	132	95	0	2577	31	18	22	26	1.97
30295793--30297289	395	3.8	396	95	0	2606	31	18	22	26	1.97
30295796--30297277	527	2.8	528	95	0	2628	31	18	22	26	1.97
30296819--30297158	44	7.8	44	65	13	144	31	19	24	25	1.98
30298766--30298811	18	2.6	18	83	16	53	26	2	2	69	1.11
30298783--30298822	3	13.3	3	100	0	80	32	0	0	67	0.91
30300581--30300668	45	2.0	45	97	0	167	34	18	10	37	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208