genome.fa.s18.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  29  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11378055--11378200	70	2.2	64	89	7	220	50	13	19	17	1.77
11378337--11378381	18	2.5	17	79	10	54	73	4	8	13	1.23
11383721--11383914	45	4.3	45	89	0	271	40	14	19	25	1.90
11396076--11396101	6	4.3	6	100	0	52	61	0	19	19	1.35
11409313--11409361	16	2.7	19	73	20	52	61	4	0	34	1.15
11409456--11409526	22	3.2	21	76	7	61	63	4	7	25	1.38
11413696--11413741	7	6.6	7	92	0	65	8	30	4	56	1.49
11414562--11414615	18	2.9	18	80	2	54	59	7	5	27	1.47
11420578--11420613	2	18.0	2	100	0	72	50	50	0	0	1.00
11425264--11425386	61	2.0	60	83	10	153	25	8	21	44	1.79
11432409--11432461	26	2.0	27	92	3	90	50	20	24	3	1.64
11434881--11434932	24	2.2	24	89	0	77	55	9	1	32	1.43
11436837--11436888	24	2.2	24	89	0	77	55	9	1	32	1.43
11438793--11438844	24	2.2	24	89	0	77	55	9	1	32	1.43
11440778--11440844	31	2.2	30	81	5	80	34	11	13	40	1.81
11442035--11442102	29	2.3	30	82	7	77	36	2	8	51	1.48
11442586--11442638	25	2.1	25	82	6	63	30	7	1	60	1.35
11442790--11442833	21	2.1	21	95	0	79	22	6	36	34	1.81
11443957--11443998	16	2.5	17	84	7	59	47	26	14	11	1.78
11447042--11447091	24	2.1	24	85	7	66	26	14	4	56	1.56
11451670--11451732	31	2.0	31	100	0	126	50	22	11	15	1.75
11461926--11462060	67	2.0	67	100	0	270	31	14	16	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11470778--11470833	28	2.1	28	83	9	73	26	1	7	64	1.29
11474573--11474597	6	4.2	6	100	0	50	36	0	0	64	0.94
11482374--11482410	17	2.2	16	90	4	56	32	0	2	64	1.07
11483794--11483839	23	2.0	23	86	4	65	8	17	23	50	1.74
11500974--11502091	132	8.5	132	98	0	2146	30	25	15	28	1.96
11502066--11502314	134	1.9	133	95	0	453	28	22	21	27	1.99
11502216--11502411	95	2.0	96	94	1	340	29	21	19	29	1.98
11502478--11502611	42	3.1	42	61	23	98	23	23	25	27	2.00
11502402--11502665	86	3.1	86	90	0	402	26	24	21	27	1.99
11509027--11509065	3	13.0	3	100	0	78	66	0	0	33	0.92
11514870--11514894	2	12.5	2	100	0	50	48	52	0	0	1.00
11529826--11529850	13	1.9	13	100	0	50	24	8	8	60	1.52
11535048--11535131	24	3.4	24	67	16	73	53	7	14	25	1.66
11535034--11535133	49	2.0	49	100	0	200	52	6	16	26	1.66
11546216--11546288	31	2.4	31	100	0	146	46	12	16	24	1.81
11546216--11546323	31	3.5	31	87	2	130	47	13	13	25	1.80
11550244--11550348	37	2.9	37	91	2	169	24	21	17	36	1.95
11550312--11550528	52	4.2	52	84	8	284	27	22	14	35	1.93
11550362--11550534	46	3.7	46	84	9	231	28	22	14	34	1.93
11550311--11550534	98	2.3	98	92	0	367	28	22	14	34	1.93
11552793--11552861	16	4.4	16	78	10	54	53	1	2	42	1.24
11553036--11553060	9	2.8	9	100	0	50	80	0	12	8	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11553452--11553492	18	2.3	18	84	12	50	36	4	2	56	1.34
11554056--11554124	25	2.6	25	84	9	84	40	10	1	47	1.46
11554078--11554125	25	1.9	25	95	0	87	37	6	0	56	1.25
11554253--11554297	22	2.2	20	88	8	63	64	0	33	2	1.06
11554261--11554310	26	2.0	25	92	4	82	64	0	34	2	1.05
11554255--11554314	26	2.5	22	72	23	59	61	0	36	1	1.06
11555225--11555300	27	2.8	27	85	0	107	15	28	28	26	1.96
11555342--11555380	17	2.2	19	90	9	64	15	0	15	69	1.20
11555344--11555380	19	2.0	19	89	5	58	16	0	10	72	1.10
11555366--11555438	26	2.7	27	91	4	112	43	1	10	43	1.48
11556006--11556151	58	2.5	60	82	7	181	50	14	6	28	1.66
11558078--11558110	14	2.4	14	90	10	50	48	9	0	42	1.35
11566815--11566843	3	9.7	3	100	0	58	68	0	0	31	0.89
11573039--11573083	19	2.4	17	82	17	54	31	0	4	64	1.13
11576882--11576922	22	2.0	22	85	9	59	48	0	2	48	1.14
11595119--11595162	16	2.8	16	76	13	54	56	6	0	36	1.26
11596064--11596150	36	2.4	36	96	0	156	29	24	13	32	1.94
11596064--11596154	18	5.1	18	87	0	128	30	23	14	31	1.94
11604477--11604505	2	14.5	2	100	0	58	0	48	0	51	1.00
11613072--11613110	19	2.1	18	86	13	53	10	10	15	64	1.50
11614779--11614831	26	2.0	26	100	0	106	43	30	11	15	1.81
11629962--11629987	5	5.2	5	100	0	52	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11644203--11644288	42	2.0	43	95	4	156	34	9	27	27	1.88
11652886--11652929	18	2.4	18	85	7	54	63	2	2	31	1.19
11680205--11680364	81	2.0	81	96	2	295	28	15	18	37	1.92
11685685--11685710	4	6.5	4	100	0	52	0	23	0	76	0.78
11696733--11696894	82	2.0	82	100	0	324	33	12	12	41	1.81
11698717--11698767	23	2.3	21	75	18	50	52	7	1	37	1.42
11711086--11711132	23	2.0	24	83	8	60	29	21	6	42	1.77
11711863--11712047	46	4.0	46	91	0	280	30	25	8	35	1.85
11713273--11713320	17	2.9	17	87	3	62	54	20	0	25	1.45
11730910--11730988	39	2.0	39	100	0	158	49	25	10	15	1.75
11738770--11738989	37	6.0	37	94	1	372	24	21	16	37	1.93
11738953--11739417	52	9.2	52	82	8	570	28	22	14	35	1.93
11738952--11739417	98	4.7	98	91	1	671	28	22	14	34	1.93
11742546--11742749	49	4.0	50	82	10	232	32	29	14	24	1.94
11742630--11742748	58	2.0	59	96	1	222	31	30	14	23	1.94
11744002--11744221	37	6.0	37	94	1	372	24	21	16	37	1.93
11744185--11744649	52	9.2	52	83	8	579	28	22	14	34	1.93
11744184--11744649	98	4.7	98	91	1	680	28	22	14	34	1.93
11749718--11749742	13	1.9	13	100	0	50	32	4	24	40	1.73
11751532--11751642	41	2.7	41	95	0	195	30	22	27	18	1.98
11751504--11751677	41	4.2	41	83	2	145	32	18	25	23	1.97
11756768--11756827	19	3.0	20	80	11	61	58	0	1	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11756783--11756868	28	3.1	27	69	23	70	55	1	1	41	1.14
11756793--11756837	19	2.4	19	81	3	56	62	0	2	35	1.08
11759070--11759107	12	3.3	12	85	7	53	71	5	23	0	1.07
11759548--11759609	24	2.5	25	74	10	65	46	4	0	48	1.23
11764034--11764059	5	5.2	5	100	0	52	38	19	0	42	1.51
11778304--11778479	37	4.8	37	96	0	298	39	13	21	26	1.90
11778442--11778565	46	2.8	44	87	6	178	32	16	23	27	1.96
11780766--11780806	21	2.0	21	81	18	50	21	26	19	31	1.97
11790964--11791001	18	2.1	19	90	5	60	52	5	21	21	1.66
11799363--11799406	21	2.1	21	82	0	52	11	38	34	15	1.84
11813948--11814083	56	2.5	55	86	6	174	22	29	22	25	1.99
11816421--11816465	24	1.9	24	86	4	65	46	8	4	40	1.55
11830310--11830347	14	2.7	14	100	0	76	47	0	15	36	1.46
11832188--11832228	21	2.0	21	90	0	64	29	21	29	19	1.98
11837444--11837480	17	2.1	19	90	10	60	27	5	0	67	1.12
11840984--11841033	20	2.6	19	78	9	57	34	4	4	58	1.36
11849779--11849818	12	3.5	11	90	6	62	67	2	2	27	1.16
11849811--11849856	15	3.0	16	81	9	60	45	0	2	52	1.13
11849934--11849976	15	2.8	16	79	10	54	44	0	2	53	1.13
11849916--11850138	104	2.1	105	97	1	423	42	2	4	50	1.38
11850023--11850084	15	4.1	16	76	18	53	45	0	1	53	1.10
11850038--11850080	15	2.8	16	79	10	54	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11849810--11850079	119	2.3	119	88	7	397	43	1	4	50	1.33
11849916--11850184	105	2.6	103	90	7	393	42	2	4	50	1.34
11850158--11850199	15	2.7	16	82	14	52	45	0	2	52	1.13
11850149--11850190	15	2.9	15	82	10	52	47	0	0	52	1.00
11850416--11850483	16	4.2	16	90	0	109	39	32	0	27	1.57
11861030--11861063	18	1.9	17	88	5	50	32	0	8	58	1.29
11868526--11868682	78	2.0	78	97	0	296	48	23	14	14	1.79
11873449--11873528	11	7.6	11	73	16	62	57	0	1	41	1.07
11873448--11873555	51	2.1	52	91	6	175	61	0	1	37	1.07
11873511--11873570	30	2.1	30	93	6	106	70	0	1	28	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208