genome.fa.s18.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  185  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57979107--57979192	37	2.3	37	95	0	154	23	16	15	45	1.85
57981252--57981317	33	2.0	33	82	11	82	53	1	0	45	1.09
57985455--57985486	16	2.0	16	100	0	64	37	31	0	31	1.58
57991688--57991742	23	2.4	23	87	6	76	43	10	12	32	1.78
57991747--57991798	23	2.3	23	90	6	79	42	9	13	34	1.77
57991683--57991798	59	2.0	59	94	0	205	45	9	13	31	1.76
57991849--57991880	9	3.6	9	100	0	64	78	9	0	12	0.97
57996158--57996230	36	2.0	36	92	5	121	47	9	16	26	1.77
57996199--57996250	23	2.3	23	90	6	79	42	9	13	34	1.77
57997880--57997904	12	2.1	12	100	0	50	36	0	0	64	0.94
58004665--58004748	29	2.9	29	73	3	80	17	0	32	50	1.47
58006711--58006776	33	2.0	33	85	11	91	53	0	0	46	1.00
58008862--58008901	18	2.2	18	86	0	53	15	15	17	52	1.75
58008974--58009076	53	1.9	53	100	0	206	19	13	22	44	1.85
58014455--58014481	3	9.0	3	100	0	54	33	0	0	66	0.92
58021941--58021986	17	2.6	18	82	3	58	60	2	2	34	1.21
58021979--58022013	16	2.1	17	89	5	54	68	0	8	22	1.16
58021979--58022012	17	1.9	17	88	5	50	70	0	8	20	1.13
58027191--58027233	16	2.8	15	80	13	52	58	13	23	4	1.55
58029931--58029986	28	2.0	28	100	0	112	39	28	10	21	1.87
58031783--58031820	15	2.5	15	84	12	51	57	13	26	2	1.49
58032269--58032306	19	2.0	19	100	0	76	42	15	15	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58042075--58042127	26	2.0	28	92	7	92	16	22	11	49	1.78
58043932--58044020	45	2.0	45	95	0	160	40	10	31	17	1.83
58047312--58047405	30	3.1	30	96	1	170	40	6	26	26	1.80
58047310--58047390	15	5.3	16	71	11	80	43	6	24	25	1.77
58051972--58052035	30	2.1	31	94	2	112	39	6	28	26	1.80
58051970--58052020	15	3.3	16	72	10	61	43	5	25	25	1.77
58059464--58059547	40	2.0	40	88	4	123	44	8	9	38	1.67
58062550--58062626	14	5.0	15	71	20	52	42	15	9	32	1.78
58062566--58062605	20	2.0	20	90	0	62	50	12	10	27	1.72
58062554--58062620	34	1.9	35	90	3	109	46	13	8	31	1.74
58062589--58062628	14	2.9	14	84	0	53	42	17	7	32	1.77
58063752--58063794	18	2.5	17	81	7	50	46	2	0	51	1.13
58063772--58063820	25	2.0	24	84	4	62	51	4	0	44	1.20
58077015--58077068	26	2.0	27	89	3	83	18	22	11	48	1.79
58089937--58089965	14	2.1	14	100	0	58	37	13	20	27	1.91
58091963--58092056	45	2.1	44	82	9	111	69	10	9	10	1.38
58092546--58092588	21	2.0	23	82	17	56	53	0	0	46	1.00
58094768--58094826	31	1.9	30	86	3	82	35	10	6	47	1.64
58096506--58096624	60	2.0	60	83	0	148	42	2	12	42	1.56
58099852--58099954	26	4.0	26	76	9	102	32	3	2	61	1.29
58099945--58099995	21	2.2	24	83	10	63	31	7	1	58	1.37
58099963--58100039	38	2.1	38	85	7	104	24	2	5	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58099999--58100067	25	2.9	24	78	16	72	23	1	2	72	1.06
58099988--58100067	14	5.8	14	69	16	51	22	1	3	72	1.08
58100650--58100710	30	2.0	30	100	0	122	36	13	0	50	1.41
58103973--58104056	38	2.4	33	81	16	107	35	13	19	32	1.90
58107816--58107898	38	2.4	33	83	16	114	33	13	20	32	1.91
58110518--58110543	13	2.0	13	100	0	52	30	0	38	30	1.58
58111994--58112027	16	2.1	16	88	0	50	50	11	23	14	1.76
58113570--58113602	16	2.0	17	88	5	50	24	0	12	63	1.28
58118171--58118215	20	2.2	21	80	11	58	40	0	6	53	1.27
58118171--58118220	19	2.5	20	81	9	59	36	0	6	58	1.23
58120321--58120370	20	2.5	20	86	0	73	18	22	18	42	1.90
58121900--58121934	17	2.1	17	88	0	52	28	20	25	25	1.99
58126287--58126322	18	2.0	18	88	0	54	55	2	0	41	1.14
58129527--58129559	16	2.1	16	100	0	66	57	6	0	36	1.23
58129535--58129619	38	2.1	38	81	12	91	54	3	1	41	1.25
58135772--58135828	18	3.2	18	92	0	96	31	17	24	26	1.97
58146663--58146697	18	1.9	18	100	0	70	37	5	28	28	1.80
58146874--58146997	64	1.9	64	98	0	239	38	14	10	36	1.81
58161510--58161545	18	2.0	18	88	0	54	55	2	0	41	1.14
58175263--58175319	26	2.1	27	81	15	66	47	0	5	47	1.24
58175528--58175632	52	2.0	52	94	0	183	35	17	21	25	1.95
58179100--58179435	111	3.0	111	87	7	484	27	16	14	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58179788--58179839	11	4.8	11	76	2	52	17	11	3	67	1.36
58179791--58179859	33	2.1	32	82	15	79	20	11	2	65	1.38
58179981--58180005	13	1.9	13	100	0	50	32	0	0	68	0.90
58186850--58186891	22	1.9	22	90	0	66	16	9	7	66	1.42
58186850--58186902	22	2.4	22	83	0	61	15	11	5	67	1.38
58187043--58187067	13	1.9	13	100	0	50	32	0	0	68	0.90
58187098--58187139	16	2.6	17	77	7	52	26	0	4	69	1.08
58199111--58199148	3	12.7	3	94	0	67	65	2	0	31	1.06
58205519--58205682	82	2.0	82	100	0	328	46	4	23	25	1.72
58206910--58206952	22	2.0	22	85	0	59	62	11	4	20	1.46
58212684--58212892	72	2.9	71	77	5	222	29	16	20	33	1.95
58215216--58215305	11	8.5	11	69	21	50	37	3	0	58	1.14
58215240--58215272	16	2.0	17	94	5	59	33	0	0	66	0.92
58215208--58215293	40	2.1	41	93	4	149	38	2	0	59	1.10
58215228--58215305	23	3.1	24	78	14	70	35	3	0	60	1.15
58221716--58221789	29	2.5	29	84	4	94	27	13	13	45	1.81
58223043--58223090	20	2.5	19	81	18	55	27	2	8	62	1.35
58223612--58223658	17	2.8	17	78	15	53	72	8	0	19	1.10
58231526--58231623	47	2.1	47	84	3	126	45	5	4	44	1.44
58232695--58232820	63	2.0	63	98	0	243	25	13	28	32	1.94
58235789--58235813	2	12.5	2	100	0	50	48	0	0	52	1.00
58237122--58237173	16	3.2	16	94	0	86	28	0	36	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58237154--58237244	45	2.0	44	87	2	128	31	5	28	34	1.80
58237545--58237586	15	2.7	16	82	14	52	52	2	0	45	1.13
58237554--58237595	15	2.9	15	82	10	52	52	0	0	47	1.00
58237580--58237767	61	3.1	61	67	17	183	48	6	2	42	1.42
58237543--58237840	120	2.5	121	93	3	503	50	5	2	42	1.38
58237664--58237715	15	3.6	15	80	12	56	53	1	0	44	1.11
58237783--58238063	91	3.0	93	80	10	277	48	3	3	44	1.37
58237856--58238063	91	2.3	91	88	4	285	46	3	4	45	1.41
58238514--58238567	18	3.3	18	65	24	55	35	24	20	20	1.96
58238511--58238582	31	2.3	31	100	0	144	38	25	16	19	1.92
58238782--58238817	15	2.4	15	100	0	72	44	11	8	36	1.70
58239030--58239054	6	4.2	6	100	0	50	48	0	0	52	1.00
58243526--58243557	9	3.6	9	91	0	55	28	0	25	46	1.53
58245403--58245444	21	2.0	21	86	4	59	54	0	4	40	1.21
58245631--58245724	28	3.5	26	72	16	75	40	0	2	57	1.11
58247906--58247943	14	2.7	14	91	0	58	36	2	2	57	1.26
58248391--58248528	43	3.2	43	83	4	161	33	22	15	28	1.95
58248358--58248528	43	4.0	43	77	5	148	32	22	15	30	1.94
58251019--58251057	9	4.3	9	86	0	60	30	2	25	41	1.69
58253234--58253271	19	2.1	19	90	9	62	36	0	2	60	1.11
58255086--58255256	7	24.4	7	70	4	94	46	32	1	19	1.61
58255090--58255188	36	2.8	36	75	6	119	48	30	1	20	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58255090--58255255	29	5.7	28	70	16	95	46	30	1	20	1.61
58255607--58255976	116	3.2	114	82	7	392	28	22	17	32	1.96
58261804--58261856	22	2.3	23	78	15	56	45	26	5	22	1.74
58263215--58263246	3	10.7	3	100	0	64	0	34	0	65	0.93
58264396--58264430	17	2.1	17	94	0	61	31	8	28	31	1.87
58268797--58268854	3	19.3	3	100	0	116	32	0	0	67	0.91
58272753--58272809	25	2.3	24	80	13	71	19	3	21	56	1.57
58282156--58282202	15	3.1	15	84	6	51	17	40	12	29	1.86
58288636--58288685	13	4.2	12	78	16	59	54	2	0	44	1.11
58291253--58291316	32	2.0	32	100	0	128	18	18	6	56	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208