genome.fa.s18.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  17  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6941580--6941725	49	3.0	49	90	1	229	32	29	13	23	1.93
6942977--6943206	37	6.0	37	87	9	320	25	21	15	36	1.93
6943123--6943391	46	5.6	46	85	10	349	28	22	14	34	1.93
6943166--6943385	52	4.3	52	86	8	308	27	23	14	35	1.93
6943123--6943391	98	2.7	98	94	0	466	28	22	14	34	1.93
6945781--6945918	59	2.3	59	94	0	240	31	24	16	26	1.96
6950239--6950278	13	3.0	13	82	7	53	42	12	2	42	1.56
6958131--6958155	7	3.6	7	100	0	50	16	44	12	28	1.83
6969449--6969488	5	8.0	5	100	0	80	20	0	20	60	1.37
6975864--6975939	40	1.9	40	97	0	143	35	7	26	30	1.85
6984904--6984946	13	3.2	13	80	12	52	60	6	0	32	1.23
6984949--6985007	13	4.1	14	71	18	50	49	1	0	49	1.11
6984977--6985006	16	1.9	15	93	6	51	53	0	0	46	1.00
6986130--6986155	3	8.7	3	100	0	52	30	0	34	34	1.58
6987817--6988229	42	9.9	42	88	3	512	31	21	21	26	1.98
6987817--6988143	124	2.6	125	90	3	507	32	21	22	23	1.98
6987817--6988244	83	5.1	84	84	4	501	31	21	20	26	1.98
6988298--6988331	14	2.4	14	95	0	59	52	20	8	17	1.71
6988557--6988584	12	2.3	12	100	0	56	0	35	17	46	1.49
6988585--6988799	26	8.6	25	83	11	264	33	0	19	46	1.56
6988681--6988786	25	4.1	24	89	7	113	35	0	19	43	1.58
6988659--6988780	18	6.4	18	67	26	74	35	1	18	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6988687--6988799	53	2.2	51	96	3	208	34	0	18	46	1.49
6988836--6988983	74	2.0	74	100	0	296	40	6	1	51	1.37
6989133--6989203	13	5.5	13	86	0	106	50	2	7	39	1.44
6989132--6989203	26	2.8	26	100	0	144	50	2	6	40	1.44
6989208--6989251	17	2.6	17	100	0	88	36	0	15	47	1.46
6992022--6992338	115	2.8	114	93	1	553	38	18	15	27	1.91
6992087--6992165	40	2.0	40	84	0	104	34	18	16	30	1.94
6992203--6992280	40	2.0	39	82	7	95	34	19	16	29	1.94
6992242--6992413	75	2.3	74	95	2	308	39	18	13	27	1.89
6992127--6992505	189	2.0	189	90	1	589	39	18	14	26	1.90
6992502--6992786	114	2.5	115	81	2	315	31	22	17	28	1.97
6993291--6993464	7	25.1	7	66	15	51	39	39	4	17	1.68
6993370--6993441	21	3.1	21	76	19	72	38	44	4	12	1.62
6993370--6993426	27	2.1	27	100	0	114	38	47	3	10	1.55
6993896--6994033	73	1.9	72	86	4	197	30	19	21	28	1.98
6993933--6994259	113	2.9	114	84	2	408	29	23	21	25	1.99
6994227--6994379	39	3.8	40	80	3	141	21	19	21	37	1.95
6996628--6996655	14	2.0	14	100	0	56	57	0	0	42	0.99
6996629--6996663	17	2.0	17	88	5	52	60	0	0	40	0.97
7002141--7002189	24	2.0	24	100	0	98	4	8	32	55	1.48
7007935--7007979	19	2.3	19	84	3	54	57	2	4	35	1.31
7009540--7009601	30	2.0	30	84	9	81	30	4	9	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7009784--7009845	31	2.1	29	84	6	79	51	14	0	33	1.43
7013046--7013109	32	2.0	32	100	0	128	28	21	18	31	1.97
7015439--7015473	14	2.4	14	95	4	61	8	25	0	65	1.21
7015419--7015463	19	2.5	18	83	16	58	6	26	0	66	1.16
7018461--7018506	18	2.6	18	86	3	58	43	0	2	54	1.12
7018667--7018764	44	2.2	45	85	5	128	34	27	5	32	1.79
7019035--7019071	19	1.9	19	88	0	56	70	2	0	27	1.01
7021242--7021271	14	2.1	14	93	0	51	13	23	0	63	1.29
7026697--7026857	51	3.2	51	93	0	270	31	13	23	31	1.93
7026759--7026944	87	2.1	88	92	1	311	29	15	23	31	1.95
7026810--7026893	36	2.3	37	91	2	134	26	15	26	32	1.96
7026847--7026945	51	2.0	50	95	2	180	30	15	25	29	1.95
7031589--7031626	15	2.5	15	84	12	51	42	0	44	13	1.43
7031619--7031669	3	17.0	3	80	8	59	60	0	37	1	1.08
7031605--7031668	18	3.4	18	80	16	67	54	0	40	4	1.21
7036016--7036064	21	2.3	21	78	0	62	2	30	10	57	1.43
7050820--7050884	29	2.2	29	83	8	78	55	3	6	35	1.40
7064163--7064341	89	2.0	89	100	0	358	36	16	14	32	1.89
7065552--7065678	63	2.0	63	85	0	173	29	22	16	31	1.96
7068257--7068298	22	2.0	21	85	4	57	38	0	0	61	0.96
7068257--7068312	21	2.6	22	80	5	60	39	0	0	60	0.97
7068308--7068353	24	1.9	24	90	0	74	30	6	0	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7071285--7071314	16	1.9	16	93	6	53	43	33	10	13	1.77
7074317--7074573	140	1.8	140	82	5	331	43	22	9	24	1.82
7085078--7085132	17	3.4	17	70	14	62	23	29	20	27	1.99
7085075--7085143	31	2.2	31	97	0	129	27	27	18	26	1.98
7108629--7108711	32	2.5	33	84	9	107	39	1	2	56	1.20
7108629--7108724	34	3.0	31	79	13	86	42	2	2	53	1.24
7116841--7116896	27	2.1	27	96	3	105	42	23	16	17	1.88
7122493--7122542	26	1.9	26	84	8	66	46	2	0	52	1.12
7122594--7122644	19	2.8	19	82	11	54	39	0	0	60	0.97
7124174--7124221	18	2.7	17	77	3	51	31	2	0	66	1.03
7124174--7124223	12	4.0	13	77	15	52	32	2	0	66	1.03
7128331--7128699	183	2.0	183	98	0	720	39	18	18	23	1.93
7129111--7129150	21	1.9	21	89	0	62	0	25	12	62	1.30
7145356--7145389	18	1.9	18	88	5	52	14	14	2	67	1.34
7155404--7155460	20	2.7	21	76	15	64	40	3	1	54	1.28
7155406--7155460	21	2.6	22	80	8	69	41	3	1	52	1.29
7156045--7156079	17	2.1	17	100	0	70	40	0	0	60	0.97
7166380--7166446	33	2.0	33	100	0	134	26	11	17	43	1.84
7196049--7196079	15	2.1	15	100	0	62	19	25	35	19	1.95
7197217--7197289	33	2.2	33	83	11	89	56	12	12	19	1.67
7214652--7214681	15	1.9	16	93	6	53	16	3	13	66	1.37
7215039--7215088	13	3.8	13	89	0	64	34	4	18	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7215678--7215721	22	2.0	21	86	4	61	40	4	11	43	1.61
7215705--7215775	22	3.2	22	63	21	58	38	7	12	42	1.70
7215700--7215793	44	2.1	44	100	0	188	42	6	13	37	1.70
7218581--7218644	28	2.3	28	79	12	78	29	12	0	57	1.35
7218632--7218688	18	3.6	18	69	30	65	22	7	0	70	1.11
7218564--7218686	29	4.1	28	75	20	90	25	10	0	64	1.25
7218641--7218688	13	3.5	13	76	15	51	22	6	0	70	1.09
7218641--7218723	29	2.8	29	83	10	98	20	9	0	69	1.16
7218646--7218697	15	3.6	14	76	7	59	23	7	0	69	1.14
7218710--7218967	5	47.0	5	67	23	62	24	15	0	60	1.38
7218599--7218910	16	19.9	15	66	25	73	22	14	0	62	1.33
7218710--7218950	28	8.2	28	64	30	76	23	14	0	60	1.37
7218710--7218821	12	8.8	12	70	23	61	25	17	0	55	1.48
7218813--7218927	35	3.3	36	78	14	125	19	13	0	66	1.24
7218800--7218965	68	2.4	72	75	13	175	22	13	0	63	1.29
7218824--7218951	21	6.8	20	69	22	82	22	12	0	64	1.27
7218918--7218970	17	3.1	17	83	8	63	30	13	0	56	1.37
7218942--7219043	32	3.0	34	76	13	102	28	11	0	58	1.39
7219014--7219068	25	2.2	25	90	6	85	38	7	1	52	1.40
7220488--7220518	12	2.6	12	94	0	53	22	3	0	74	0.96
7220867--7220899	17	2.0	17	88	5	50	30	15	0	54	1.41
7220994--7221072	28	3.0	28	67	19	69	36	10	0	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7222191--7222264	25	3.0	25	76	7	96	51	2	12	33	1.53
7225697--7225738	20	2.0	21	81	9	50	33	2	2	61	1.21
7235581--7235634	25	2.2	25	96	0	99	38	14	9	37	1.79
7240817--7240857	21	2.0	21	85	9	57	17	12	4	65	1.42
7241619--7241668	22	2.2	23	85	3	66	50	2	4	44	1.32
7241644--7241683	16	2.5	16	91	0	62	47	2	7	42	1.45
7241737--7241899	35	4.5	35	67	18	107	39	4	9	46	1.57
7241678--7241909	112	2.1	111	92	0	383	40	6	7	45	1.59
7241952--7242102	33	4.5	33	71	14	130	23	0	33	42	1.59
7241951--7242121	67	2.6	67	78	12	181	23	0	32	43	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208