genome.fa.s18.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  99  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33516895--33517198	19	16.5	19	63	26	95	31	0	20	46	1.57
33517062--33517183	18	6.4	18	67	26	74	35	1	18	44	1.60
33516797--33517202	51	8.0	51	87	6	562	32	0	20	46	1.56
33517239--33517388	73	2.1	73	98	0	291	42	6	1	50	1.35
33517270--33517382	35	3.1	35	67	16	104	38	7	1	52	1.39
33517535--33517605	13	5.5	13	86	0	106	50	2	7	39	1.44
33517534--33517605	26	2.8	26	100	0	144	50	2	6	40	1.44
33517610--33517653	17	2.6	17	100	0	88	36	0	15	47	1.46
33520422--33520738	115	2.8	114	93	1	553	38	18	15	27	1.91
33520487--33520565	40	2.0	40	84	0	104	34	18	16	30	1.94
33520603--33520680	40	2.0	39	82	7	95	34	19	16	29	1.94
33520642--33520813	75	2.3	74	94	2	299	38	18	14	27	1.90
33520527--33520905	189	2.0	189	89	2	582	39	19	14	26	1.90
33520902--33521186	114	2.5	115	81	2	315	31	22	17	28	1.97
33521691--33521864	7	25.1	7	66	15	51	39	39	4	17	1.68
33521770--33521841	21	3.1	21	76	19	72	38	44	4	12	1.62
33521770--33521826	27	2.1	27	100	0	114	38	47	3	10	1.55
33522296--33522433	73	1.9	72	86	4	197	30	19	21	28	1.98
33522333--33522659	113	2.9	114	83	2	399	30	23	21	25	1.99
33522630--33522759	39	3.3	38	78	10	127	22	18	22	36	1.95
33529574--33529628	19	2.9	19	81	7	51	34	9	25	30	1.87
33539958--33540053	45	2.1	45	82	3	113	31	26	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33541505--33541658	28	5.5	28	90	0	227	31	10	26	31	1.90
33542381--33542734	47	7.6	48	72	6	282	27	13	18	40	1.88
33542434--33542731	23	12.8	23	68	12	117	26	13	18	40	1.88
33542399--33542731	93	3.6	93	92	0	535	27	13	18	41	1.87
33543247--33543426	50	3.7	49	83	5	215	20	32	20	26	1.97
33546911--33547473	114	4.9	115	75	10	442	30	17	22	28	1.97
33546908--33547473	229	2.5	228	81	6	599	30	17	22	28	1.97
33547815--33547869	22	2.5	22	91	2	85	16	0	38	45	1.47
33549036--33549129	44	2.1	44	88	3	136	23	32	7	36	1.83
33550754--33550847	35	2.7	35	90	1	145	32	4	3	59	1.33
33550854--33550909	16	3.3	17	80	9	78	37	16	3	42	1.65
33550859--33550931	34	2.3	33	86	11	100	41	16	2	39	1.63
33550875--33550963	47	1.9	45	84	4	115	44	13	1	40	1.51
33551008--33551092	24	4.0	21	75	14	68	52	18	1	27	1.52
33551022--33551076	12	4.8	12	88	4	78	52	16	1	29	1.54
33551015--33551083	24	3.0	24	87	8	92	53	17	1	27	1.52
33551033--33551092	12	5.7	10	90	5	68	55	16	0	28	1.42
33551135--33551312	95	1.9	95	96	0	329	52	17	1	27	1.54
33551298--33551325	12	2.3	12	100	0	56	53	14	0	32	1.41
33551386--33551412	12	2.2	12	100	0	54	51	14	0	33	1.43
33551046--33551447	71	4.8	83	80	15	395	52	16	2	27	1.56
33551397--33551463	19	3.7	19	79	18	88	50	17	1	29	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33551397--33551535	9	15.9	9	76	16	116	47	20	1	30	1.59
33551428--33551535	16	6.9	16	75	17	86	47	21	1	29	1.61
33551432--33551535	25	4.1	25	81	4	136	46	22	1	29	1.63
33556999--33557047	21	2.3	21	92	0	80	38	20	36	4	1.72
33557033--33557059	12	2.2	12	100	0	54	40	18	40	0	1.51
33557486--33557656	43	4.0	42	81	9	152	25	22	19	32	1.97
33557907--33558007	52	1.9	52	87	0	148	36	10	8	43	1.71
33558451--33558502	20	2.7	19	85	5	61	30	0	7	61	1.24
33558458--33558502	18	2.3	20	85	7	58	35	0	6	57	1.25
33561243--33561317	29	2.6	30	79	10	93	60	0	5	34	1.20
33562377--33562438	27	2.2	30	82	8	76	46	12	0	40	1.42
33572445--33572478	15	2.2	16	89	5	52	26	2	5	64	1.30
33576390--33576433	21	2.1	21	83	8	54	63	4	4	27	1.33
33580387--33580437	21	2.5	20	80	3	57	41	25	17	15	1.89
33580428--33580481	21	2.5	22	90	6	83	38	27	22	11	1.88
33580387--33580517	23	6.0	22	77	15	121	38	24	20	16	1.92
33581920--33582000	5	16.0	5	92	7	137	59	0	0	40	0.98
33584146--33584714	291	2.0	291	97	0	1075	33	23	12	30	1.92
33585564--33585616	18	2.9	18	80	2	61	41	45	1	11	1.51
33585658--33585698	6	6.8	6	100	0	82	65	17	0	17	1.27
33585738--33585813	9	8.4	9	80	0	89	27	11	19	40	1.87
33588931--33588997	23	2.9	23	90	0	89	38	23	19	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33588889--33589001	46	2.6	42	74	19	108	41	23	16	17	1.89
33590341--33590383	5	8.6	5	100	0	86	60	0	0	39	0.97
33593052--33593120	25	2.7	25	82	6	77	21	23	18	36	1.95
33601145--33601210	2	33.0	2	93	0	114	48	1	50	0	1.10
33602860--33602923	17	3.6	17	74	15	67	26	12	14	46	1.79
33602852--33602922	36	2.0	36	97	0	133	25	12	15	46	1.81
33602851--33602907	19	3.1	19	71	19	66	26	12	15	45	1.82
33607971--33608034	17	3.6	17	74	15	67	26	12	14	46	1.79
33607965--33608033	36	1.9	36	96	0	129	26	11	15	46	1.80
33608228--33608324	49	2.0	48	93	2	167	19	13	23	43	1.86
33609615--33609659	22	2.0	22	87	8	65	37	0	6	55	1.26
33609781--33609834	23	2.3	23	87	0	81	57	11	0	31	1.34
33612688--33612825	20	6.9	20	77	6	109	20	21	21	37	1.94
33612708--33612834	40	3.2	40	80	5	159	18	20	22	39	1.93
33618858--33618923	31	2.1	31	85	0	87	46	10	9	33	1.70
33619012--33619054	17	2.4	19	80	11	54	25	0	2	72	0.97
33619015--33619071	19	3.2	18	85	5	62	28	1	1	68	1.09
33621464--33621531	26	2.7	26	86	6	95	36	19	25	19	1.94
33623215--33623245	6	5.3	6	96	3	55	48	0	12	38	1.42
33625216--33625271	15	3.7	15	80	0	58	33	16	1	48	1.56
33630089--33630123	7	4.7	7	89	10	52	0	14	31	54	1.40
33632483--33632521	14	2.8	14	96	0	69	15	5	38	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33638129--33638169	20	2.0	20	100	0	82	24	9	19	46	1.80
33649209--33649353	27	5.4	27	75	11	127	20	15	20	44	1.87
33649211--33649357	54	2.7	54	85	4	163	21	14	19	44	1.87
33650051--33650092	12	3.5	12	75	12	50	23	42	0	33	1.55
33657992--33658199	40	5.2	40	79	2	195	29	22	18	29	1.97
33657992--33658199	79	2.6	79	82	1	236	29	22	18	29	1.97
33659378--33659408	10	3.1	10	100	0	62	9	9	22	58	1.59
33662802--33662826	13	1.9	13	100	0	50	28	0	0	72	0.86
33663121--33663146	11	2.4	11	100	0	52	34	0	7	57	1.27
33672079--33672123	24	1.9	23	82	13	56	46	26	6	20	1.75
33673168--33673328	33	4.8	32	73	8	142	29	26	14	29	1.95
33673156--33673395	101	2.4	101	94	0	408	28	25	14	31	1.95
33681492--33681535	23	2.0	22	82	13	54	52	2	0	45	1.13
33687618--33687676	29	2.0	29	90	0	91	22	10	32	35	1.87
33688458--33688490	17	1.9	17	93	0	57	51	0	6	42	1.26
33699173--33699216	23	1.9	22	82	17	54	36	25	0	38	1.56
33699261--33699349	45	2.0	45	93	0	151	32	22	19	25	1.97
33699360--33699537	51	3.5	50	75	6	180	32	26	15	25	1.96
33699357--33699542	101	1.9	100	85	5	250	32	26	16	24	1.96
33699763--33699793	16	1.9	16	93	0	53	45	3	9	41	1.53
33708388--33708431	23	1.9	23	90	0	70	13	11	29	45	1.79
33724967--33725058	21	4.4	21	78	13	100	25	2	33	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33724982--33725056	7	10.6	7	76	12	64	26	1	30	41	1.64
33728473--33728525	24	2.2	24	89	0	79	33	5	9	50	1.58
33730624--33730674	21	2.4	21	83	3	57	13	0	37	49	1.43
33730679--33730718	15	2.6	16	80	11	57	20	2	32	45	1.64
33738307--33738400	42	2.2	42	82	0	107	25	29	24	20	1.99
33738900--33738961	31	2.0	31	96	0	115	33	29	4	32	1.78
33746475--33746526	27	1.9	27	92	0	86	32	30	19	17	1.95
33746399--33746599	102	2.0	102	92	0	339	33	27	18	20	1.96
33753185--33753218	16	2.2	16	90	10	54	0	11	0	88	0.52
33753585--33753612	3	9.3	3	100	0	56	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208