genome.fa.s18.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  116  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37903992--37904221	101	2.3	100	91	1	370	31	15	24	28	1.96
37906870--37906896	4	6.8	4	100	0	54	77	0	0	22	0.76
37913384--37913410	4	6.8	4	100	0	54	77	0	0	22	0.76
37915377--37915417	20	2.0	20	100	0	82	24	14	4	56	1.58
37930535--37930568	16	2.0	18	88	11	54	32	11	5	50	1.63
37931160--37931205	22	2.1	22	100	0	92	26	13	17	43	1.85
37934559--37934661	27	3.8	25	74	13	89	64	0	5	29	1.23
37934667--37934698	9	3.6	9	100	0	64	81	0	0	18	0.70
37935439--37935498	30	2.0	30	86	0	84	21	33	13	31	1.92
37937966--37938006	21	2.0	21	90	0	64	19	29	21	29	1.98
37958747--37958775	13	2.2	13	100	0	58	65	0	13	20	1.26
37959766--37959819	24	2.2	24	83	0	63	14	24	24	37	1.93
37959777--37959829	24	2.2	23	80	9	61	15	24	24	35	1.94
37959850--37959920	25	2.8	25	84	0	88	22	26	18	32	1.97
37967896--37968163	105	2.6	103	91	3	437	31	31	20	17	1.95
37980342--37980369	13	2.2	13	100	0	56	21	0	0	78	0.75
37980391--37980433	18	2.2	21	84	12	56	39	0	4	55	1.20
37981490--37981525	19	1.9	19	88	5	56	41	0	5	52	1.24
37982944--37982968	10	2.5	10	100	0	50	48	24	0	28	1.52
37988006--37988052	21	2.2	22	88	3	69	21	36	19	23	1.95
37993081--37993193	30	3.8	28	72	11	82	36	9	15	38	1.80
37998965--37999056	38	2.4	38	85	3	123	30	43	10	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38000811--38000892	36	2.3	37	81	10	98	37	1	2	58	1.19
38000940--38000967	14	2.0	14	100	0	56	50	14	7	28	1.69
38006920--38006959	19	2.2	17	91	8	62	45	5	15	35	1.68
38010668--38010925	63	4.1	61	78	7	243	29	19	25	25	1.99
38016508--38016630	43	2.9	42	84	4	140	27	14	22	34	1.93
38016497--38016641	43	3.4	42	79	3	130	30	13	22	33	1.93
38020028--38020142	23	5.2	23	73	11	71	5	21	1	71	1.15
38020104--38020142	9	4.2	9	80	6	51	2	12	0	84	0.72
38020968--38021186	63	3.7	62	81	9	237	26	19	27	26	1.99
38021077--38021184	50	2.2	50	91	0	180	24	21	28	25	1.99
38021015--38021235	113	2.0	112	86	0	307	26	19	28	26	1.99
38025097--38025164	29	2.3	31	77	10	70	45	8	11	33	1.72
38028686--38028868	38	4.8	38	89	0	276	31	31	24	12	1.92
38030151--38030202	3	17.3	3	86	7	70	65	1	1	30	1.14
38030226--38030272	22	2.1	22	84	7	60	76	2	21	0	0.89
38030674--38030714	19	2.1	20	90	4	66	60	2	7	29	1.36
38030972--38031082	47	2.4	47	95	3	199	42	3	14	39	1.63
38030974--38031046	22	3.2	22	65	24	60	41	2	15	41	1.61
38031608--38031641	17	1.9	17	88	5	50	50	5	2	41	1.42
38034052--38034096	22	2.1	21	83	4	54	53	26	13	6	1.64
38035608--38035649	14	2.9	15	75	7	50	57	11	4	26	1.54
38037084--38037267	97	1.9	96	82	3	226	36	16	21	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38042761--38042833	24	3.0	24	89	0	110	35	21	28	13	1.92
38046720--38046861	70	2.0	70	100	0	284	35	16	6	41	1.74
38061330--38061368	20	2.1	18	85	9	51	53	2	12	30	1.52
38061464--38061516	24	2.2	24	83	6	63	49	1	9	39	1.46
38067008--38067067	27	2.2	27	96	0	111	30	13	11	45	1.79
38067666--38067703	16	2.4	16	86	4	51	65	0	0	34	0.93
38070914--38070942	14	2.1	14	100	0	58	37	6	13	41	1.72
38072710--38072802	47	2.0	47	93	0	159	41	13	13	30	1.84
38077270--38077347	35	2.3	34	84	6	95	33	1	2	62	1.17
38077269--38077347	11	6.9	11	71	13	61	34	1	2	62	1.17
38079071--38079117	15	3.4	15	72	22	57	29	31	4	34	1.77
38079063--38079117	26	2.1	26	100	0	110	32	30	3	32	1.75
38086275--38086316	22	2.1	19	86	13	57	45	2	0	52	1.13
38087883--38087941	25	2.3	27	82	8	70	47	1	3	47	1.29
38088893--38089006	37	2.9	40	71	9	108	28	14	22	34	1.94
38088901--38089035	40	3.4	40	72	7	123	28	16	22	31	1.96
38090699--38090734	18	2.0	18	88	0	54	50	11	25	13	1.75
38098464--38098498	15	2.2	16	95	5	63	48	0	0	51	1.00
38099016--38099065	25	2.0	26	88	4	75	60	16	0	24	1.36
38100966--38101452	241	2.0	241	98	0	938	25	13	22	38	1.91
38104103--38104140	20	1.9	20	88	0	58	28	7	13	50	1.69
38104598--38104655	26	2.2	26	90	0	89	41	10	13	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38106409--38106553	56	2.6	56	94	1	254	55	20	11	12	1.68
38114074--38114116	3	14.3	3	100	0	86	32	0	32	34	1.58
38117457--38117513	21	2.7	21	97	0	105	26	15	35	22	1.94
38132436--38132464	14	2.1	14	100	0	58	13	20	51	13	1.75
38135687--38135804	50	2.4	50	81	5	139	24	23	23	27	2.00
38135883--38136189	100	3.1	99	85	2	409	29	19	23	26	1.98
38135874--38136141	50	5.4	50	66	7	157	29	20	25	25	1.99
38136241--38136363	45	2.7	45	80	0	165	28	20	26	25	1.99
38138177--38138329	45	3.4	45	87	0	225	41	18	17	22	1.91
38138533--38138617	40	2.2	40	82	6	102	41	20	5	32	1.76
38139716--38139763	3	16.3	3	79	12	55	29	2	0	68	1.01
38139780--38139827	25	2.0	25	87	4	71	35	6	6	52	1.52
38139866--38139904	18	2.2	17	86	4	51	35	7	0	56	1.28
38141765--38141791	7	3.9	7	100	0	54	44	11	0	44	1.39
38151457--38151517	31	2.0	30	84	9	79	37	9	6	45	1.63
38172131--38172232	29	3.4	29	73	7	89	29	6	2	60	1.37
38172131--38172232	30	3.4	30	76	6	100	29	6	2	60	1.37
38172209--38172253	22	2.1	21	84	8	56	31	6	0	62	1.21
38172220--38172266	22	2.1	22	84	7	60	27	8	0	63	1.23
38172131--38172274	60	2.4	59	80	7	141	29	6	2	61	1.36
38172170--38172253	30	2.9	30	77	7	75	28	7	1	63	1.28
38177133--38177195	31	2.1	30	88	8	92	33	1	0	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38177150--38177188	21	1.9	21	94	5	71	30	2	0	66	1.05
38177139--38177205	30	2.2	31	84	7	84	32	1	2	62	1.19
38179065--38179095	14	2.2	14	94	0	53	61	16	0	22	1.34
38180166--38180226	22	2.7	22	87	2	77	49	1	1	47	1.21
38180202--38180241	16	2.5	16	91	0	62	47	2	7	42	1.45
38180314--38180341	9	3.1	9	100	0	56	32	0	10	57	1.33
38180230--38180372	68	2.1	66	90	2	232	41	4	8	45	1.53
38180903--38180929	4	6.8	4	100	0	54	77	0	0	22	0.76
38194144--38194211	29	2.3	30	82	7	95	27	29	13	29	1.94
38194033--38194364	174	1.9	174	98	0	637	30	25	14	29	1.95
38194320--38194420	29	3.5	29	84	0	121	29	28	12	28	1.93
38201614--38201681	29	2.3	30	82	7	95	27	29	13	29	1.94
38201790--38201890	29	3.5	29	84	0	121	29	28	12	28	1.93
38201504--38201855	174	2.0	173	95	1	625	30	25	13	30	1.94
38206338--38206372	18	1.9	18	94	0	61	54	5	0	40	1.24
38206339--38206381	12	3.6	12	84	12	52	51	6	0	41	1.29
38206728--38206756	14	2.0	15	93	6	51	27	17	6	48	1.72
38207175--38207217	19	2.3	19	84	4	52	32	9	4	53	1.53
38207269--38207329	21	2.7	22	80	12	63	31	1	0	67	1.01
38220001--38220068	29	2.3	30	82	7	95	27	29	13	29	1.94
38220177--38220277	29	3.5	29	84	0	121	29	28	12	28	1.93
38219891--38220242	174	2.0	173	95	1	625	30	25	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38224725--38224759	18	1.9	18	94	0	61	54	5	0	40	1.24
38224726--38224768	12	3.6	12	84	12	52	51	6	0	41	1.29
38225684--38225721	14	2.4	17	87	12	55	52	0	0	47	1.00
38225701--38225744	12	3.7	11	80	14	52	45	2	0	52	1.13
38225696--38225758	24	2.7	23	78	9	65	50	1	0	47	1.10
38225713--38225761	20	2.5	20	76	6	55	53	2	0	44	1.12
38244186--38244224	20	2.0	20	85	5	53	35	2	0	61	1.10
38244205--38244255	21	2.3	23	86	10	70	37	0	3	58	1.16
38244401--38244438	18	2.1	19	90	5	60	47	15	5	31	1.68
38248841--38248887	20	2.3	21	77	3	51	46	2	10	40	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208