genome.fa.s18.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  145  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47297327--47297353	14	1.9	14	100	0	54	14	25	22	37	1.93
47303769--47303855	25	3.4	25	76	10	88	31	20	26	21	1.98
47303882--47304048	50	3.4	49	73	13	130	35	22	23	17	1.95
47303894--47303976	25	3.3	25	76	15	73	36	22	25	15	1.94
47303872--47304048	98	1.8	98	83	9	236	36	22	23	18	1.95
47303819--47304009	48	3.9	49	75	13	153	37	21	24	16	1.93
47306636--47306888	46	5.6	46	93	2	433	33	15	22	28	1.95
47306636--47306888	91	2.8	91	95	1	447	33	15	22	28	1.95
47306636--47306888	137	1.9	134	94	2	443	33	15	22	28	1.95
47313595--47313641	21	2.2	22	77	11	53	23	0	4	72	1.02
47316105--47316139	19	1.9	17	88	11	52	40	8	11	40	1.72
47316166--47316213	22	2.2	22	78	10	55	45	2	8	43	1.45
47316163--47316628	149	3.1	146	84	8	560	42	4	9	42	1.59
47316163--47316574	149	2.7	151	87	4	562	43	4	9	42	1.57
47316542--47316603	31	2.0	31	81	3	72	33	4	9	51	1.56
47319239--47319283	20	2.2	21	88	4	65	20	4	6	68	1.29
47338285--47338585	42	7.2	42	86	1	381	20	18	24	35	1.95
47338285--47338590	166	1.8	169	85	2	438	20	18	24	35	1.95
47339426--47339722	150	2.0	150	85	6	406	42	4	10	42	1.60
47342478--47342541	32	2.0	32	93	0	110	53	18	15	12	1.73
47353810--47353936	27	4.7	27	85	0	173	36	13	23	26	1.92
47353799--47353966	27	6.2	27	82	1	149	37	13	24	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47353847--47353980	54	2.5	54	85	4	173	36	13	24	25	1.92
47353799--47353966	81	2.1	81	83	4	205	37	13	24	24	1.92
47356737--47356774	12	3.3	12	82	14	53	55	0	0	44	0.99
47374966--47375100	40	3.4	40	84	2	173	11	16	27	44	1.82
47377391--47377485	25	3.8	25	72	5	84	35	18	25	20	1.95
47384993--47385088	50	1.9	51	80	6	115	32	20	23	22	1.98
47385070--47385162	24	3.8	24	66	9	64	34	21	26	17	1.95
47385230--47385284	25	2.2	25	86	0	83	38	18	25	18	1.93
47385431--47385486	20	2.7	21	72	10	53	50	12	0	37	1.41
47386163--47386193	15	2.1	15	94	5	55	19	12	0	67	1.22
47386989--47387030	21	2.0	21	85	0	57	28	14	16	40	1.88
47387788--47387818	6	5.2	6	92	0	53	16	35	45	3	1.63
47390007--47390135	42	3.1	42	76	8	127	44	14	22	18	1.86
47390027--47390129	21	4.9	21	62	8	57	42	15	22	19	1.88
47393120--47393158	18	2.2	18	86	9	53	58	0	2	38	1.12
47393411--47393612	93	2.1	100	84	10	267	51	2	2	43	1.28
47393431--47393638	93	2.2	93	78	13	214	52	1	3	42	1.29
47396306--47396355	20	2.5	19	75	9	55	52	2	12	34	1.50
47396975--47397149	73	2.4	72	78	10	185	20	25	19	35	1.95
47400118--47400153	11	3.3	11	88	11	56	36	0	0	63	0.94
47403216--47403423	109	1.9	109	93	2	355	33	20	16	29	1.95
47403933--47403980	10	4.5	10	77	12	51	64	0	4	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47404994--47405033	20	2.0	20	85	9	55	2	17	25	55	1.55
47405861--47406184	44	7.6	43	70	13	168	25	21	21	31	1.98
47405898--47406192	44	6.9	44	68	13	177	26	21	20	31	1.98
47405815--47406192	87	4.5	83	77	10	349	26	22	20	30	1.98
47406368--47406709	88	3.9	86	88	3	334	24	21	23	30	1.99
47406525--47406663	44	3.2	44	67	8	138	28	23	21	26	1.99
47406484--47406711	88	2.6	88	96	2	415	24	21	23	30	1.99
47406569--47406707	44	3.2	44	67	8	129	23	21	25	28	1.99
47408863--47408896	16	2.2	16	89	5	52	11	2	11	73	1.20
47412945--47413152	109	1.9	109	93	2	355	33	20	16	29	1.95
47414721--47414760	20	2.0	20	85	9	55	2	17	25	55	1.55
47416401--47416510	54	2.0	55	98	1	213	39	10	10	40	1.74
47433684--47433761	25	3.2	24	75	14	79	42	1	3	52	1.27
47433701--47433900	62	3.1	62	67	13	147	43	3	5	48	1.41
47438517--47438636	59	2.0	59	100	0	240	51	15	10	23	1.72
47446538--47446571	17	2.1	17	88	5	52	76	11	0	11	1.02
47447401--47447425	12	2.1	12	100	0	50	40	0	8	52	1.31
47447761--47447798	13	2.9	13	84	0	58	34	5	23	36	1.78
47463539--47463599	23	2.6	23	76	7	61	24	3	34	37	1.72
47466507--47466557	26	2.0	25	88	3	75	66	3	5	23	1.30
47467076--47467116	19	2.1	18	86	13	55	63	7	4	24	1.40
47468615--47468723	44	2.5	43	85	5	139	32	21	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47468615--47468766	44	3.4	44	79	8	132	30	23	17	28	1.97
47468819--47469124	99	3.1	100	87	3	404	26	22	20	30	1.98
47468944--47469130	50	3.8	50	72	3	164	25	25	21	27	1.99
47468951--47469558	267	2.3	266	89	1	914	25	25	21	27	1.99
47481259--47481309	26	2.0	25	88	3	75	66	3	5	23	1.30
47481832--47481870	19	2.0	18	85	14	51	64	7	5	23	1.40
47481870--47481911	18	2.1	20	75	25	52	61	4	0	33	1.17
47485052--47485089	13	2.7	14	84	12	51	5	26	2	65	1.27
47497011--47497053	13	3.2	13	83	6	50	11	4	0	83	0.78
47497655--47497695	13	3.0	14	82	13	50	43	2	0	53	1.13
47502149--47502201	21	2.5	21	81	0	70	32	35	5	26	1.80
47507151--47507357	108	1.9	108	92	2	344	29	16	19	33	1.95
47508712--47508755	19	2.3	20	84	7	56	27	20	11	40	1.86
47512833--47513112	88	3.5	82	82	12	321	28	21	22	26	1.99
47513074--47513234	86	1.9	79	84	8	205	31	23	20	24	1.98
47513571--47513774	86	2.4	83	89	5	297	29	22	22	25	1.99
47513533--47513712	43	4.2	43	75	9	170	31	24	19	24	1.98
47513577--47513728	43	3.6	43	73	9	150	30	24	21	23	1.99
47514551--47514590	20	2.0	20	85	9	55	55	25	17	2	1.55
47516157--47516364	109	1.9	109	93	2	355	29	16	20	33	1.95
47519423--47519458	11	3.3	11	88	11	56	63	0	0	36	0.94
47520568--47520605	11	3.7	10	86	13	51	26	0	5	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47522414--47522584	73	2.3	72	78	8	177	35	19	23	20	1.96
47523200--47523248	20	2.5	20	76	6	55	32	12	2	53	1.50
47531401--47531431	6	5.2	6	92	0	53	3	45	35	16	1.63
47533850--47533936	25	3.5	25	72	9	79	22	24	19	33	1.97
47533971--47534063	24	3.8	24	65	10	64	17	26	21	34	1.95
47534045--47534140	50	1.9	51	80	6	115	22	23	20	32	1.98
47543856--47543975	39	3.1	38	82	9	127	44	26	15	13	1.84
47561900--47569088	85	85.3	83	75	8	4541	16	25	35	21	1.95
47561900--47569088	42	169.7	42	74	7	5185	16	25	35	21	1.95
47561801--47569088	127	57.3	126	77	6	5825	16	25	35	21	1.95
47570041--47570163	43	2.9	42	83	7	133	13	26	34	25	1.93
47570041--47570189	42	3.5	42	81	5	147	15	26	34	23	1.95
47570401--47570474	24	3.1	24	84	3	105	10	37	32	18	1.86
47570570--47573116	43	59.8	43	82	3	2788	15	27	35	20	1.94
47570570--47573116	85	29.9	85	83	2	2744	15	27	35	20	1.94
47570572--47573101	681	3.7	681	86	2	3283	15	27	35	20	1.94
47573869--47574879	42	23.8	42	82	4	1134	15	27	35	21	1.93
47573870--47574879	85	11.9	84	83	3	1134	15	27	35	21	1.94
47573873--47574879	254	4.0	255	83	4	1167	15	27	35	21	1.94
47580159--47580320	42	3.8	42	88	1	225	18	32	32	16	1.93
47580790--47580958	42	4.0	42	82	5	205	18	30	32	18	1.95
47586415--47586490	24	3.2	24	90	3	127	9	43	31	15	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47586417--47586488	23	3.1	23	91	2	117	9	43	31	15	1.79
47586591--47587343	42	17.7	42	83	6	829	14	27	36	20	1.92
47586587--47587343	85	8.9	84	83	5	855	14	27	36	20	1.92
47586590--47587328	212	3.5	211	85	4	936	14	28	36	20	1.92
47594530--47594653	42	2.9	42	85	3	142	18	34	29	16	1.94
47594924--47594999	24	3.2	24	84	3	100	7	32	32	26	1.85
47595098--47595829	42	17.7	41	81	9	730	15	27	36	21	1.93
47595094--47595829	127	5.9	126	81	8	834	15	27	36	20	1.93
47595094--47595829	85	8.9	85	81	8	790	15	27	36	20	1.93
47601744--47601859	42	2.7	42	83	1	151	18	32	31	18	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208