genome.fa.s18.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  144  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47009833--47009878	24	1.9	24	82	8	58	34	2	2	60	1.21
47009979--47010008	12	2.5	12	94	0	51	53	3	0	43	1.17
47010232--47010262	15	2.1	15	93	0	53	35	0	3	61	1.12
47010231--47010262	17	1.9	16	93	6	55	34	0	3	62	1.11
47013986--47014029	22	2.0	22	86	8	63	75	0	11	13	1.06
47013984--47014030	7	6.2	8	80	14	55	70	0	14	14	1.18
47013987--47014032	15	3.1	15	87	12	60	71	0	15	13	1.14
47015401--47015962	50	11.3	50	67	4	319	29	23	25	21	1.99
47015342--47016086	100	7.5	100	88	1	1039	29	23	25	21	1.99
47015401--47016074	50	13.5	49	62	12	149	29	23	25	21	1.99
47017579--47017617	20	1.9	21	89	5	62	33	0	2	64	1.08
47017577--47017622	24	1.9	24	82	8	58	34	2	2	60	1.21
47017574--47017636	20	3.3	19	81	14	60	34	4	1	58	1.29
47017724--47017753	12	2.5	12	94	0	51	53	3	0	43	1.17
47017691--47017752	20	3.3	19	77	4	63	46	3	0	50	1.17
47020464--47020518	18	3.1	18	82	10	76	43	23	3	29	1.71
47020462--47020542	36	2.2	36	87	8	112	45	20	3	29	1.69
47024213--47024239	13	2.1	13	100	0	54	29	0	7	62	1.22
47024343--47024527	50	3.7	50	86	5	257	25	21	30	22	1.98
47027789--47027827	2	19.5	2	83	0	51	7	0	43	48	1.31
47027789--47027826	8	4.8	8	96	0	67	7	0	42	50	1.31
47033783--47033807	13	1.9	13	100	0	50	40	16	0	44	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47037322--47037348	14	1.9	14	100	0	54	51	29	0	18	1.46
47041316--47041368	26	2.0	27	85	10	74	50	9	0	39	1.35
47041592--47041624	14	2.4	14	94	0	57	24	6	0	69	1.10
47042088--47042114	4	6.8	4	100	0	54	25	0	0	74	0.83
47042328--47042362	7	5.0	7	100	0	70	42	14	0	42	1.45
47042915--47042970	28	2.0	28	100	0	112	35	14	7	42	1.73
47044693--47044742	24	2.1	24	100	0	100	0	32	12	56	1.36
47048744--47048871	63	2.0	62	90	1	202	28	11	19	39	1.87
47050001--47050034	17	2.0	17	100	0	68	52	11	11	23	1.70
47071331--47071547	50	4.3	50	84	6	253	26	23	28	20	1.99
47071328--47071547	100	2.2	100	87	0	314	26	23	28	20	1.99
47079798--47079918	40	3.0	40	92	0	197	36	19	30	14	1.91
47079750--47079918	80	2.1	80	84	0	212	33	18	32	15	1.93
47079837--47079902	20	3.3	20	77	8	80	34	18	34	12	1.88
47079808--47079911	20	5.2	20	67	17	72	37	17	30	14	1.89
47090628--47090872	50	4.9	50	79	3	217	22	26	20	29	1.98
47090734--47090919	50	3.6	50	84	5	194	26	28	18	26	1.98
47100515--47100663	43	3.5	43	73	0	145	21	15	22	40	1.90
47115033--47115070	8	4.8	8	100	0	76	23	0	0	76	0.79
47124593--47124665	34	2.1	34	82	9	87	32	10	16	39	1.83
47124605--47124670	34	1.9	34	90	6	107	30	12	15	42	1.83
47124617--47124702	34	2.5	34	83	3	93	30	12	13	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47124860--47124943	25	3.4	25	69	12	73	38	23	14	23	1.92
47126963--47127010	12	3.8	12	83	8	60	54	0	8	37	1.31
47130992--47131044	28	2.0	27	85	7	72	43	15	0	41	1.46
47131211--47131389	57	3.1	57	84	7	220	29	16	6	47	1.72
47139455--47139483	7	4.1	7	100	0	58	13	0	44	41	1.44
47139504--47139549	5	9.0	5	97	2	83	21	0	0	78	0.76
47140592--47140639	24	2.0	25	84	12	64	29	12	16	41	1.85
47141478--47141533	28	2.0	28	100	0	112	42	25	7	25	1.80
47142913--47142970	29	1.9	31	83	13	77	53	8	15	22	1.69
47148353--47148402	24	2.1	24	100	0	100	36	16	14	34	1.88
47166241--47166291	17	3.0	17	75	16	52	72	1	19	5	1.15
47171149--47171496	40	8.7	40	97	0	633	22	28	20	28	1.98
47175961--47176062	28	3.6	28	94	0	168	31	11	25	31	1.92
47175961--47176080	28	4.3	28	88	6	101	32	11	24	31	1.91
47175960--47176080	56	2.2	55	85	4	161	33	11	23	31	1.91
47176745--47177416	23	28.8	23	75	12	500	28	14	16	40	1.88
47176736--47177438	93	7.5	93	92	1	1147	28	14	17	39	1.88
47176736--47177449	281	2.5	280	91	2	846	28	14	17	39	1.89
47180129--47180170	3	14.0	3	100	0	84	33	0	0	66	0.92
47180559--47180593	18	1.9	18	88	0	52	37	8	2	51	1.47
47180623--47180682	24	2.5	24	74	12	61	38	6	5	50	1.51
47197841--47197880	19	2.0	20	85	4	55	62	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47198292--47198443	10	16.0	9	65	22	55	32	2	3	61	1.28
47201218--47201479	127	2.1	127	94	0	461	30	16	22	29	1.96
47202570--47202662	20	4.8	19	69	23	61	41	1	3	53	1.24
47202656--47202772	62	1.9	59	87	5	171	41	4	4	50	1.41
47202886--47202933	25	1.9	25	87	8	71	37	6	8	47	1.59
47203451--47203532	27	3.0	28	80	5	87	17	29	20	32	1.95
47207949--47208032	33	2.5	33	80	0	105	16	21	14	47	1.82
47208099--47208244	58	2.5	58	82	0	157	23	27	12	36	1.90
47213382--47213431	25	2.0	25	96	0	91	38	14	8	40	1.75
47221601--47221632	16	2.0	16	93	0	55	34	28	6	31	1.82
47225356--47225541	51	3.6	51	86	4	216	34	27	13	23	1.93
47225346--47225541	102	1.9	102	86	4	279	33	28	14	23	1.94
47227692--47227737	24	1.9	24	90	0	74	39	2	8	50	1.46
47229620--47229860	50	4.8	50	82	0	241	21	27	22	27	1.99
47231956--47232007	24	2.2	24	89	0	77	34	3	7	53	1.48
47238979--47239016	19	2.1	19	85	5	51	39	2	0	57	1.12
47240333--47240366	16	2.2	16	89	5	52	0	26	0	73	0.83
47240305--47240369	21	3.0	20	73	22	53	3	27	0	69	1.03
47240927--47240980	24	2.2	25	83	3	65	29	9	12	48	1.73
47243380--47243530	41	3.7	41	91	2	223	25	27	21	25	2.00
47244158--47244212	2	28.0	2	76	10	51	43	5	3	47	1.44
47246598--47246677	40	2.0	40	87	0	115	31	20	10	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47247991--47248053	24	2.7	26	80	14	66	41	20	19	19	1.91
47248002--47248084	24	3.5	24	81	6	89	38	18	22	20	1.93
47248127--47248187	26	2.3	26	83	5	70	34	22	24	18	1.96
47254507--47255906	707	2.0	709	85	2	1913	30	19	14	34	1.92
47259251--47259290	20	2.1	19	90	4	62	55	5	0	40	1.22
47260270--47260323	26	2.0	28	82	10	67	53	1	1	42	1.22
47260327--47260414	9	10.6	8	68	20	56	67	1	3	28	1.14
47260319--47260425	19	5.7	18	75	14	81	66	0	3	28	1.15
47260326--47260415	17	5.4	17	70	20	64	67	1	3	27	1.13
47260421--47260465	21	2.1	21	84	8	56	57	2	11	28	1.45
47260757--47260955	90	2.2	90	83	5	233	33	9	21	35	1.85
47265761--47265852	45	2.0	45	91	0	148	33	22	16	27	1.95
47265858--47266044	51	3.7	50	74	4	187	32	25	17	25	1.97
47265857--47266040	101	1.8	101	85	3	262	32	25	17	25	1.97
47267802--47267876	37	2.0	37	100	0	150	33	21	13	32	1.92
47272627--47272811	50	3.7	50	89	3	257	29	26	16	27	1.97
47274722--47274783	25	2.5	26	80	17	71	17	25	22	33	1.96
47274640--47274796	26	6.3	24	70	16	90	19	25	21	34	1.96
47274830--47274902	25	2.9	26	80	8	80	24	26	17	31	1.97
47276717--47276759	2	21.5	2	95	0	77	53	0	46	0	1.00
47277387--47277430	8	5.5	8	83	8	54	36	2	0	61	1.09
47280414--47280452	14	2.8	14	84	0	51	35	12	23	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47281302--47281340	19	2.1	19	85	0	51	51	0	2	46	1.14
47281328--47281393	29	2.2	30	86	10	91	53	0	1	45	1.09
47281347--47281396	16	3.2	16	70	18	52	50	0	0	50	1.00
47288451--47288528	34	2.3	34	82	6	86	28	11	24	35	1.90
47291346--47291390	22	2.0	22	82	4	54	68	8	8	13	1.38
47292112--47292199	3	29.0	3	90	2	104	31	5	2	60	1.33
47292442--47292483	16	2.7	16	85	3	59	35	0	4	59	1.19
47292442--47292483	14	3.1	13	78	21	50	35	0	4	59	1.19
47295749--47295783	10	3.5	10	84	0	52	42	2	22	31	1.68
47295743--47295783	20	2.0	20	100	0	82	41	4	24	29	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208