genome.fa.s18.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  149  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48427343--48427447	25	4.2	25	80	11	115	33	0	19	46	1.56
48427354--48427609	9	29.8	9	71	16	186	31	1	20	46	1.60
48427524--48427609	25	3.4	25	90	0	127	26	2	19	51	1.59
48427354--48427609	34	7.4	36	73	14	186	31	1	20	46	1.60
48427661--48427897	67	3.6	66	71	16	213	37	0	15	45	1.52
48427715--48427835	28	4.2	28	69	25	83	38	0	14	45	1.51
48427715--48428115	157	2.5	158	94	2	709	38	1	14	45	1.53
48427844--48427991	28	5.1	28	72	13	102	37	1	16	44	1.56
48428000--48428088	28	2.9	29	88	11	117	34	2	15	47	1.58
48428257--48428474	13	16.5	13	72	8	145	45	4	10	39	1.58
48428248--48428450	53	3.8	53	95	0	361	44	3	10	40	1.58
48428363--48428504	66	2.2	66	81	1	169	43	2	11	41	1.56
48429442--48429473	15	2.1	15	94	0	55	53	9	6	31	1.58
48430327--48430637	147	2.1	147	77	5	317	36	22	15	25	1.94
48431565--48431617	7	7.7	7	78	4	63	47	47	0	5	1.26
48431972--48432011	14	2.9	14	78	14	55	40	42	0	17	1.49
48431935--48432011	35	2.2	35	83	0	100	37	37	0	24	1.56
48432049--48432100	20	2.5	20	79	14	61	38	44	0	17	1.49
48431990--48432151	88	1.8	88	85	5	229	45	27	0	27	1.54
48432632--48433207	114	5.1	113	80	5	547	28	24	21	25	1.99
48432634--48433222	226	2.6	228	80	8	653	28	24	21	26	1.99
48435829--48436030	27	7.5	26	85	5	242	36	19	21	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48436184--48436262	26	3.0	26	90	0	122	21	22	20	35	1.96
48436376--48436450	27	2.7	28	89	4	116	24	18	25	32	1.97
48443590--48444089	252	2.0	251	91	0	802	27	7	24	40	1.82
48450152--48450185	16	2.1	17	88	5	52	35	0	20	44	1.52
48450312--48450357	24	2.0	23	83	12	58	32	2	10	54	1.47
48450620--48450644	6	4.2	6	100	0	50	68	0	32	0	0.90
48458668--48458716	21	2.3	21	86	6	64	14	16	26	42	1.86
48470907--48471219	162	1.9	160	88	1	473	24	29	22	23	1.99
48470907--48471219	40	7.8	40	91	2	457	24	29	22	23	1.99
48473008--48473060	19	2.9	18	78	13	56	11	16	0	71	1.13
48476131--48476168	18	2.1	18	90	0	58	68	0	18	13	1.21
48483915--48483971	3	19.0	3	96	0	105	31	0	1	66	1.02
48484021--48484062	20	2.2	20	86	4	59	57	0	0	42	0.99
48484948--48485012	30	2.2	30	94	0	112	23	4	15	56	1.57
48485132--48485162	11	2.8	11	90	0	53	67	0	0	32	0.91
48485392--48485424	12	2.5	13	90	9	50	66	3	6	24	1.28
48493330--48493354	13	1.9	13	100	0	50	32	24	16	28	1.96
48499504--48499557	27	1.9	27	85	7	72	40	16	0	42	1.48
48507799--48507834	14	2.6	14	91	8	56	0	22	0	77	0.76
48510435--48510477	21	2.1	20	83	12	52	48	2	9	39	1.48
48512630--48512731	50	2.0	50	94	0	177	35	27	1	35	1.68
48525122--48525173	26	2.0	26	88	0	77	34	7	17	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48537632--48537666	16	2.1	17	89	5	54	42	11	0	45	1.40
48539878--48539969	39	2.3	40	81	7	100	10	31	21	35	1.88
48543982--48544023	20	2.1	20	86	0	57	47	0	7	45	1.30
48547045--48547080	15	2.3	16	90	4	56	41	2	0	55	1.14
48547151--48547197	11	4.5	11	82	17	64	25	0	12	61	1.31
48547160--48547196	19	1.9	19	100	0	74	27	0	10	62	1.28
48547681--48547705	3	8.3	3	100	0	50	68	0	0	32	0.90
48547867--48547911	23	2.0	23	90	0	72	46	2	4	46	1.35
48552479--48552519	21	2.0	21	90	0	64	31	7	21	39	1.81
48561510--48561569	13	4.6	13	72	13	52	35	6	21	36	1.80
48563654--48563918	57	4.6	57	75	6	225	27	21	18	32	1.97
48563625--48563869	28	8.7	28	76	6	190	27	22	19	30	1.98
48563626--48563957	86	3.9	85	81	3	337	27	21	19	31	1.98
48569547--48569590	22	2.0	21	82	4	52	56	4	4	34	1.40
48571157--48571217	29	2.1	28	84	3	77	27	14	14	42	1.85
48575300--48575484	40	4.7	40	82	7	209	24	22	27	25	2.00
48575300--48575484	79	2.3	81	83	7	227	24	22	27	25	2.00
48575355--48575517	79	2.1	79	83	6	206	26	20	27	25	1.99
48583337--48583521	79	2.3	81	84	7	236	24	22	27	25	2.00
48583338--48583521	40	4.6	39	83	9	212	24	22	27	25	2.00
48583390--48583554	79	2.1	79	83	6	201	26	20	27	26	1.99
48591850--48591949	52	1.9	51	91	2	164	48	6	5	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48598591--48598643	27	2.0	26	81	3	61	41	0	3	54	1.18
48598734--48598791	20	2.6	22	79	12	66	41	1	0	56	1.09
48603092--48603142	21	2.5	21	87	9	70	29	13	15	41	1.86
48605618--48605668	24	2.1	24	85	0	66	25	21	33	19	1.97
48607090--48607565	249	1.9	249	86	0	684	27	16	23	33	1.95
48607985--48608127	43	3.3	43	86	1	189	30	25	16	27	1.97
48613962--48614152	7	26.9	7	71	16	74	42	35	1	21	1.60
48614220--48614262	22	2.0	22	86	4	61	39	23	18	18	1.92
48614282--48614381	40	2.5	40	75	1	103	22	19	23	36	1.95
48619728--48619774	18	2.6	18	83	6	60	42	0	17	40	1.49
48620752--48620855	20	5.2	20	67	15	63	17	26	19	36	1.94
48620738--48620876	40	3.5	40	82	2	145	17	25	19	37	1.93
48625859--48625905	10	4.6	10	82	12	51	63	2	0	34	1.06
48625868--48625903	12	3.3	11	88	11	56	66	0	0	33	0.92
48629087--48629220	50	2.7	50	91	1	216	21	31	20	26	1.98
48636706--48636891	50	3.7	50	79	2	178	27	23	27	21	1.99
48643531--48643710	50	3.6	50	76	3	148	29	22	25	22	1.99
48645428--48645454	7	3.9	7	100	0	54	44	14	11	29	1.80
48646495--48646557	28	2.4	25	86	10	81	65	7	1	25	1.29
48646581--48646623	9	4.6	9	80	11	50	58	4	0	37	1.19
48646591--48646628	20	1.9	20	94	0	67	60	2	0	36	1.11
48646993--48647044	26	2.0	26	88	0	77	73	3	1	21	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48647056--48647095	21	1.9	21	89	0	62	65	2	0	32	1.06
48647047--48647101	10	5.5	10	75	14	51	63	1	1	32	1.15
48647435--48647547	10	11.8	9	69	17	59	63	2	2	30	1.22
48645981--48647983	447	4.4	446	78	12	1770	40	11	10	37	1.76
48647955--48648010	19	2.8	20	74	12	62	57	1	0	41	1.09
48648187--48648245	19	3.2	18	75	17	59	72	0	3	23	0.99
48648217--48648250	17	1.9	18	94	5	61	64	0	5	29	1.17
48648196--48648257	17	3.6	17	76	8	54	69	0	3	27	1.04
48651405--48651461	13	4.5	13	76	12	64	40	28	5	26	1.77
48651691--48651789	10	10.0	9	70	18	54	43	3	2	51	1.28
48651691--48651791	20	5.1	19	74	17	73	43	2	1	51	1.28
48651695--48651788	30	3.1	30	77	10	86	40	3	2	54	1.28
48652921--48652960	20	2.0	20	85	9	55	32	5	22	40	1.76
48654258--48654354	12	8.4	12	75	8	76	68	12	5	14	1.37
48654264--48654369	9	11.6	9	77	7	79	67	10	6	15	1.39
48654258--48654377	3	40.3	3	75	1	53	66	10	5	17	1.40
48667251--48667286	19	1.9	18	88	5	54	72	2	8	16	1.21
48670163--48670269	33	3.3	33	75	10	112	42	15	23	17	1.88
48681132--48681164	16	2.1	16	94	5	59	33	0	24	42	1.55
48685810--48685884	28	2.8	27	80	8	73	26	41	20	12	1.87
48685816--48685884	27	2.6	27	88	4	95	27	42	18	11	1.85
48695940--48696049	20	5.5	20	69	12	66	32	20	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48695970--48696060	20	4.6	20	73	10	71	31	18	26	23	1.97
48696020--48696067	20	2.4	20	82	0	60	31	16	25	27	1.97
48695943--48696074	60	2.2	60	80	2	140	34	19	23	21	1.96
48700946--48701086	68	2.1	68	94	0	246	34	12	17	36	1.86
48702651--48702791	56	2.5	57	80	11	157	43	0	2	53	1.15
48702727--48702804	26	3.3	24	67	22	58	43	1	0	55	1.08
48702749--48702781	11	3.0	11	91	8	50	42	0	0	57	0.98
48702905--48702994	45	2.0	45	89	6	139	36	27	5	30	1.80
48708300--48708417	51	2.3	51	77	0	119	38	15	2	43	1.60
48709295--48709319	3	8.3	3	100	0	50	68	0	0	32	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208