genome.fa.s18.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  164  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53033211--53033262	27	1.9	27	88	0	77	7	26	1	63	1.32
53067849--53067971	61	2.0	61	98	0	237	32	16	17	34	1.92
53076945--53076996	3	17.3	3	100	0	104	67	0	0	32	0.91
53077140--53077180	19	2.2	19	86	4	57	34	0	7	58	1.26
53077125--53077181	18	3.1	18	80	14	55	36	0	5	57	1.21
53082112--53082141	13	2.3	13	94	0	51	40	3	0	56	1.16
53084337--53084371	15	2.2	16	90	5	54	20	5	2	71	1.19
53088333--53088392	3	19.7	3	88	6	59	58	1	6	33	1.34
53090266--53090570	44	7.1	44	68	13	152	26	24	19	29	1.98
53090318--53090756	216	2.0	216	86	2	614	26	23	19	30	1.98
53090848--53091056	44	4.8	44	83	4	253	31	25	14	27	1.95
53090848--53091056	88	2.4	89	88	3	307	31	25	14	27	1.95
53093435--53093484	22	2.3	22	86	6	66	14	4	4	78	1.05
53094527--53094592	25	2.6	25	85	9	80	57	6	16	19	1.60
53099940--53099982	16	2.6	16	82	10	52	23	2	2	72	1.08
53101818--53101934	44	2.7	44	85	2	110	26	25	18	29	1.98
53101805--53102238	217	2.0	215	87	3	620	27	24	18	30	1.98
53102248--53102549	132	2.3	131	82	6	333	28	26	18	27	1.98
53102336--53102544	88	2.4	87	89	3	328	29	27	16	26	1.97
53102336--53102548	44	4.8	45	85	5	283	29	27	16	26	1.97
53103958--53104045	46	1.9	46	88	2	133	12	19	25	43	1.86
53109080--53109134	3	17.7	3	90	3	83	61	1	1	34	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53123171--53123229	15	3.7	15	78	17	57	76	1	16	5	1.05
53124538--53124585	15	3.2	15	76	8	53	52	2	14	31	1.54
53126655--53126680	13	2.0	13	100	0	52	53	0	0	46	1.00
53127349--53127382	15	2.3	15	94	0	59	61	0	2	35	1.11
53131853--53131916	26	2.5	26	89	0	92	34	20	3	42	1.68
53133970--53134027	26	2.3	26	88	8	84	41	24	20	13	1.89
53136232--53136486	107	2.4	107	87	0	350	33	24	16	25	1.96
53140870--53140914	14	3.1	15	81	15	58	62	0	2	35	1.08
53143957--53143990	16	2.0	18	88	11	54	17	5	5	70	1.28
53147054--53147108	26	2.1	26	89	0	83	36	21	20	21	1.95
53147255--53147508	27	9.4	27	91	0	364	17	18	23	40	1.90
53147255--53147509	81	3.1	81	90	0	411	17	18	23	41	1.90
53149006--53149078	27	2.7	27	85	8	112	19	15	21	43	1.87
53151343--53151555	27	7.9	26	81	6	219	44	19	17	18	1.87
53151345--53151555	81	2.6	81	82	3	253	45	19	17	18	1.86
53151344--53151560	54	4.0	54	86	0	281	44	19	17	18	1.87
53151738--53151809	26	2.8	26	84	0	99	15	22	23	38	1.92
53151926--53152016	28	3.2	28	78	9	112	25	20	23	30	1.98
53151915--53152006	28	3.2	28	81	7	121	25	20	22	31	1.98
53151914--53152031	33	3.8	33	67	25	94	24	20	23	31	1.98
53156674--53156756	41	2.0	41	93	4	141	24	13	30	32	1.93
53163737--53163788	27	1.9	27	84	0	68	23	15	17	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53163749--53163984	27	8.8	27	87	1	314	16	13	22	46	1.83
53171563--53171692	64	2.0	65	95	1	235	38	6	16	38	1.74
53178664--53178730	9	7.3	9	73	17	50	53	2	7	35	1.44
53181076--53181145	11	6.4	11	88	11	99	24	35	0	40	1.56
53184463--53184753	126	2.3	125	93	0	492	26	21	20	31	1.98
53184947--53185000	29	1.9	27	82	14	65	53	33	0	12	1.39
53187579--53187755	88	2.0	84	82	9	205	40	16	10	32	1.82
53187840--53187888	22	2.3	21	89	3	71	63	0	2	34	1.06
53188191--53188303	19	6.0	18	68	12	59	32	0	2	63	1.14
53188191--53188303	9	12.0	9	69	15	59	32	0	2	63	1.14
53192934--53192996	32	2.0	32	87	0	90	41	3	7	47	1.48
53199937--53199994	15	3.9	15	75	13	57	68	8	0	22	1.16
53199948--53199997	14	3.5	14	76	13	57	68	8	0	24	1.16
53199942--53199997	29	2.0	28	89	6	87	67	8	0	23	1.18
53199982--53200037	29	2.0	29	85	3	78	57	5	5	32	1.44
53200721--53200745	11	2.3	11	100	0	50	52	0	8	40	1.31
53217021--53217059	14	2.7	14	84	4	51	35	0	0	64	0.94
53224366--53224486	2	61.5	2	96	3	228	49	50	0	0	1.00
53226835--53226859	2	12.5	2	100	0	50	48	0	52	0	1.00
53231315--53231393	38	2.1	38	100	0	158	32	26	7	32	1.85
53234377--53234532	46	3.5	46	94	2	264	33	14	23	28	1.94
53239954--53240027	36	2.1	36	100	0	148	25	10	16	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53239954--53240013	20	3.2	20	65	26	58	25	11	16	46	1.81
53243369--53243468	49	2.0	49	98	0	191	38	24	13	25	1.91
53244020--53244056	17	2.2	17	100	0	74	37	29	16	16	1.90
53244835--53244909	22	3.4	22	63	14	55	25	5	38	30	1.78
53244840--53244927	44	2.0	44	100	0	176	25	6	34	34	1.82
53252632--53252763	66	2.0	66	96	0	246	32	23	14	29	1.94
53256801--53256858	23	2.6	23	86	8	75	67	12	1	18	1.31
53263400--53263468	36	1.9	36	96	0	129	46	18	24	10	1.80
53265046--53265133	27	3.3	27	81	0	113	45	23	12	18	1.83
53265046--53265157	54	2.1	54	83	6	138	43	23	13	19	1.86
53265085--53265171	27	3.2	27	75	4	77	37	26	13	21	1.91
53265527--53265628	28	3.7	28	94	2	179	19	21	25	33	1.97
53266487--53266529	22	1.9	22	85	4	59	32	20	4	41	1.73
53267150--53267359	7	30.1	7	74	4	138	44	33	2	19	1.64
53267230--53267359	20	6.7	20	71	16	103	44	33	1	20	1.61
53267757--53267861	40	2.6	41	76	8	108	25	20	19	35	1.95
53267541--53267974	156	2.9	153	78	9	394	27	21	17	34	1.95
53267896--53267976	40	2.0	40	87	0	117	24	18	23	33	1.97
53267733--53268006	145	1.9	145	83	4	356	25	19	19	35	1.95
53283608--53283653	19	2.3	21	82	10	62	45	13	0	41	1.43
53284267--53284304	16	2.2	18	86	9	53	57	2	5	34	1.35
53291437--53291482	18	2.5	19	79	13	51	36	21	8	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53292454--53292490	18	2.1	18	90	5	58	16	43	24	16	1.87
53296108--53296192	21	4.0	22	77	8	86	40	22	21	16	1.91
53296148--53296191	23	1.9	23	100	0	88	38	22	20	18	1.93
53297214--53297257	19	2.4	19	92	3	72	4	18	0	77	0.94
53297213--53297263	24	2.1	24	85	0	66	5	15	0	78	0.93
53299925--53299990	18	3.6	17	78	10	60	40	6	18	34	1.75
53311209--53311357	42	3.6	41	79	10	151	22	18	24	34	1.96
53314746--53314800	25	2.2	25	86	0	74	27	29	14	29	1.95
53314753--53314810	25	2.3	25	87	0	80	25	25	20	27	1.99
53317164--53317247	44	1.9	43	82	2	105	41	20	17	20	1.90
53320127--53321803	645	2.6	637	82	6	1983	36	17	14	31	1.90
53322224--53322267	14	3.0	14	75	12	52	31	6	2	59	1.36
53325461--53325492	13	2.5	13	94	0	55	28	28	3	40	1.71
53332235--53332287	20	2.5	22	77	14	58	41	20	1	35	1.64
53336582--53336724	46	3.1	46	82	2	189	43	15	13	27	1.85
53336583--53336714	24	5.7	24	74	14	98	43	15	15	26	1.86
53344452--53344536	43	2.0	44	86	9	122	45	3	4	45	1.41
53345132--53345183	10	5.4	10	79	6	63	30	0	0	69	0.89
53345200--53345256	26	2.2	26	81	9	64	29	1	5	63	1.27
53345725--53345762	18	2.1	18	90	0	58	65	0	2	31	1.06
53346118--53346207	31	2.9	31	82	12	114	45	2	20	32	1.63
53347575--53347599	13	1.9	13	100	0	50	28	48	16	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53348773--53348830	26	2.2	26	84	0	71	41	18	15	24	1.89
53348797--53348846	26	2.0	26	84	7	68	34	24	20	22	1.97
53350118--53350182	26	2.5	26	85	2	78	38	20	18	23	1.93
53351063--53351093	14	2.1	15	94	5	55	9	0	0	90	0.46
53351687--53351740	25	2.2	25	89	0	81	25	3	0	70	1.04
53352153--53352196	23	1.9	23	82	17	56	25	11	2	61	1.41
53352167--53352213	19	2.5	20	86	6	62	25	8	6	59	1.50
53352181--53352222	19	2.2	20	82	4	50	28	7	11	52	1.64
53354805--53354889	44	1.9	44	83	4	109	40	21	17	21	1.92
53356964--53357048	43	2.0	43	84	9	111	44	3	5	45	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208