genome.fa.s18.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  110  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36190099--36190260	61	2.7	61	96	0	297	39	2	22	35	1.67
36190099--36191495	23	55.3	29	76	17	452	29	0	23	45	1.58
36190115--36190215	32	3.2	32	70	8	109	41	3	24	29	1.73
36190223--36190361	58	2.4	57	83	5	181	30	1	29	38	1.66
36190233--36190420	63	3.1	62	83	6	208	28	1	28	41	1.65
36190360--36191477	23	46.4	24	81	12	1191	28	0	22	48	1.55
36190360--36191486	74	15.6	74	80	14	1080	28	0	22	48	1.55
36193634--36193667	15	2.3	15	90	5	52	67	5	0	26	1.13
36193766--36193821	28	2.0	29	92	3	96	60	1	0	37	1.07
36193863--36193904	22	1.9	22	90	0	66	33	0	33	33	1.58
36193906--36193997	22	4.2	22	86	8	125	42	0	27	30	1.56
36193906--36193997	44	2.1	44	89	4	141	42	0	27	30	1.56
36195463--36195518	28	2.1	28	86	6	80	37	5	5	51	1.47
36207327--36207381	30	2.0	26	82	13	65	30	1	3	63	1.22
36210300--36210339	19	2.0	20	85	4	55	45	7	12	35	1.70
36213146--36213198	18	2.9	18	80	2	61	41	45	1	11	1.51
36213314--36213362	9	5.4	9	92	0	80	26	10	20	42	1.84
36213314--36213371	27	2.1	27	87	0	80	25	10	20	43	1.84
36213314--36213371	18	3.2	18	90	0	80	25	10	20	43	1.84
36221236--36221284	20	2.7	18	77	22	57	51	4	2	42	1.32
36223418--36223535	51	2.3	51	86	4	159	45	5	19	28	1.73
36232973--36233046	33	2.2	33	85	0	103	31	9	14	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36236575--36236727	56	2.7	56	88	2	227	32	6	14	46	1.70
36239155--36239217	31	2.0	31	96	0	117	46	9	7	36	1.66
36255106--36255147	22	1.9	22	90	0	66	16	11	42	28	1.84
36256479--36256528	26	2.0	24	84	7	64	22	0	6	72	1.07
36258812--36258852	20	2.0	20	95	0	73	29	12	24	34	1.91
36261220--36261573	94	3.8	94	83	1	424	28	18	18	34	1.95
36261364--36261508	44	3.2	44	71	21	134	27	17	17	37	1.93
36261499--36261623	50	2.5	50	86	2	171	29	19	20	30	1.97
36261545--36261977	94	4.7	94	72	14	276	26	21	19	32	1.97
36261692--36261802	44	2.5	44	94	0	195	27	18	20	34	1.96
36263384--36263415	16	2.0	16	93	0	55	6	28	25	40	1.79
36279876--36279916	13	3.2	13	86	3	57	7	19	2	70	1.22
36281415--36281447	15	2.1	16	88	5	50	33	0	0	66	0.92
36288294--36288404	29	3.8	29	75	1	78	22	17	21	38	1.93
36292006--36292148	41	3.5	40	87	3	135	27	23	20	27	1.99
36295385--36295418	14	2.5	13	90	9	50	2	17	0	79	0.86
36309678--36309708	15	2.1	15	93	0	53	16	6	9	67	1.39
36311261--36311336	11	6.8	11	72	21	52	40	2	2	53	1.28
36313248--36313282	19	1.9	17	88	11	52	25	11	0	62	1.28
36315684--36315715	3	10.7	3	100	0	64	34	0	0	65	0.93
36335679--36335761	43	2.0	43	95	2	150	27	7	7	57	1.52
36337228--36337295	31	2.3	30	84	5	84	50	11	14	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36347123--36347180	27	2.1	27	96	0	107	20	27	20	31	1.98
36358794--36358833	21	1.9	22	85	10	57	10	17	2	70	1.27
36359878--36360056	89	2.0	89	100	0	358	52	17	15	14	1.75
36371697--36371723	3	9.0	3	100	0	54	66	0	0	33	0.92
36371722--36371755	3	11.3	3	100	0	68	35	0	0	64	0.94
36380544--36380580	19	1.9	19	88	0	56	48	8	0	43	1.32
36388208--36388254	24	1.9	24	86	4	67	34	12	19	34	1.89
36388816--36388845	16	1.9	16	93	6	53	30	0	20	50	1.49
36392784--36392921	37	3.7	37	78	2	125	31	15	17	36	1.91
36392784--36392921	74	1.9	74	81	1	168	31	15	17	36	1.91
36393255--36393309	22	2.4	23	84	3	67	43	12	5	38	1.66
36394992--36395321	107	3.0	105	76	12	297	56	16	1	25	1.50
36395017--36395433	228	1.9	221	85	4	575	56	16	2	24	1.51
36396603--36396766	80	2.0	80	94	0	283	31	15	25	27	1.96
36399685--36399782	30	3.3	30	79	0	115	34	44	12	8	1.71
36400119--36400180	21	3.0	21	75	13	65	33	38	17	9	1.83
36403451--36403738	126	2.3	126	92	1	479	28	20	18	32	1.96
36403781--36404243	96	4.8	95	89	5	686	39	17	2	41	1.62
36403737--36404266	287	1.8	293	87	4	797	39	17	2	40	1.62
36408683--36408735	27	2.0	27	88	0	79	28	24	13	33	1.93
36408684--36408741	27	2.1	27	83	0	71	31	25	12	31	1.92
36413273--36413313	6	6.8	6	100	0	82	68	14	0	17	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36414255--36414352	36	2.8	34	77	9	97	48	0	3	47	1.17
36417758--36417789	9	3.4	10	87	12	50	0	28	0	71	0.86
36422064--36422382	108	3.0	107	88	5	484	31	17	20	31	1.95
36422795--36422855	22	2.7	23	75	9	63	54	0	11	34	1.37
36428367--36428439	38	1.9	37	86	8	103	31	21	1	45	1.61
36428575--36428662	23	3.8	23	96	0	158	32	26	21	19	1.97
36429090--36429148	30	2.0	30	86	0	82	33	22	5	38	1.76
36429561--36429597	9	4.1	9	100	0	74	45	10	10	32	1.74
36429955--36429985	16	1.9	16	93	0	53	25	29	0	45	1.54
36432592--36432713	49	2.5	48	82	2	138	31	24	13	30	1.94
36439146--36439198	21	2.5	21	84	9	63	47	7	7	37	1.60
36439355--36439389	18	1.9	18	88	0	52	40	20	8	31	1.82
36449254--36449344	25	3.6	25	77	5	85	30	20	21	26	1.98
36454767--36454872	51	2.1	51	98	0	203	47	23	6	22	1.75
36465820--36465860	22	1.9	21	85	5	55	26	0	7	65	1.18
36465979--36466039	29	2.1	30	87	9	90	39	1	3	55	1.26
36465957--36466031	37	1.9	39	81	7	91	36	4	2	57	1.32
36471050--36471165	61	1.9	61	80	3	135	33	8	13	43	1.75
36471311--36471364	22	2.6	21	80	13	67	79	0	5	14	0.90
36481306--36481353	24	2.0	24	87	0	69	22	6	50	20	1.71
36484734--36484764	16	1.9	16	100	0	62	45	0	6	48	1.28
36484875--36484917	21	2.0	21	100	0	86	55	20	9	13	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36487165--36487265	51	2.0	51	88	0	148	33	20	11	33	1.89
36488214--36488291	29	2.7	29	80	9	97	30	20	12	35	1.90
36490861--36490948	44	2.0	44	93	0	149	28	21	15	34	1.94
36492404--36492456	24	2.2	24	83	10	63	26	26	20	26	1.99
36496994--36497063	26	2.7	27	86	4	99	31	18	18	31	1.95
36502720--36502808	44	2.0	44	95	0	160	31	6	33	28	1.83
36504031--36504102	27	2.7	27	84	2	92	33	12	16	37	1.86
36504381--36504450	34	2.2	31	89	7	104	31	22	24	21	1.98
36504724--36504769	23	2.0	23	100	0	92	26	8	13	52	1.69
36508591--36508630	20	2.0	20	85	0	53	45	15	27	12	1.82
36509348--36509408	32	1.9	32	86	0	86	27	16	4	50	1.65
36517480--36517516	18	2.1	18	90	5	58	40	13	8	37	1.74
36520045--36520123	27	2.9	27	81	5	88	24	12	21	41	1.87
36526111--36526161	26	2.0	26	92	0	84	35	23	21	19	1.96
36540685--36540836	27	5.6	27	92	3	250	26	14	28	30	1.95
36540685--36540836	55	2.8	55	95	0	268	26	14	28	30	1.95
36544898--36544957	27	2.2	27	80	19	72	31	13	10	45	1.76
36544717--36545106	134	2.9	134	80	3	421	30	15	13	40	1.86
36544927--36545307	206	1.8	206	81	1	476	30	14	14	40	1.86
36545130--36545578	134	3.3	133	79	6	449	31	15	13	39	1.87
36548912--36549215	47	6.5	47	90	1	423	43	15	12	28	1.83
36550153--36550223	28	2.6	27	86	6	97	25	29	12	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36553949--36553991	19	2.3	19	88	8	61	60	4	2	32	1.30
36554172--36554228	9	6.3	9	76	8	62	31	0	1	66	1.02
36554154--36554225	18	4.1	18	74	13	60	31	0	1	66	1.00
36560975--36561110	50	2.7	52	82	10	165	30	26	17	25	1.97
36560975--36561094	51	2.4	50	86	6	154	30	25	17	25	1.97
36565760--36565817	28	2.1	28	96	0	107	44	22	8	24	1.80
36569554--36570089	109	5.0	108	88	6	759	33	18	16	30	1.94
36570216--36570311	4	22.8	4	74	14	61	70	3	4	21	1.18
36570216--36570321	19	5.6	18	73	20	76	70	2	3	22	1.16
36570216--36570328	5	23.4	5	77	11	71	70	3	3	22	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208