genome.fa.s18.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  192  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59895148--59895196	21	2.3	21	79	6	55	8	12	0	79	0.93
59897911--59897945	16	2.2	16	89	0	52	42	22	17	17	1.88
59899374--59899406	3	11.0	3	100	0	66	66	0	0	33	0.92
59905092--59905121	14	2.2	14	94	5	53	66	0	0	33	0.92
59909780--59909814	17	2.1	16	89	5	52	28	0	0	71	0.86
59909878--59909917	21	1.9	21	100	0	80	42	27	0	30	1.56
59912701--59912730	3	10.0	3	100	0	60	33	0	33	33	1.58
59914001--59914168	9	18.7	9	66	21	77	60	4	0	33	1.22
59914003--59914105	10	10.2	10	69	14	59	61	5	0	32	1.26
59914031--59914094	33	1.9	33	84	6	85	57	6	1	34	1.33
59914001--59914168	19	9.3	19	67	18	67	60	4	0	33	1.22
59914129--59914170	8	5.0	8	78	21	50	64	0	0	35	0.94
59914905--59914958	18	2.9	18	81	5	72	35	0	1	62	1.06
59914809--59914983	10	18.7	9	66	22	69	33	2	3	60	1.28
59915182--59915214	3	11.0	3	100	0	66	33	0	0	66	0.92
59918851--59918907	22	2.6	22	82	0	69	15	10	49	24	1.76
59919849--59920123	86	3.1	86	75	8	228	35	18	17	28	1.94
59920034--59921395	72	18.2	72	77	11	1021	33	20	16	29	1.95
59919955--59920868	158	5.9	157	80	11	550	33	20	17	28	1.96
59920030--59921377	232	6.0	228	76	12	1050	33	20	17	29	1.95
59920424--59920781	73	4.9	73	91	2	540	32	19	17	31	1.95
59920435--59921569	517	2.3	489	84	7	1462	33	19	15	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59921395--59921569	70	2.5	72	84	6	209	33	22	14	29	1.94
59934029--59934079	20	2.5	20	79	17	61	66	3	1	27	1.20
59934034--59934076	17	2.6	16	82	10	52	69	2	2	25	1.12
59958815--59958881	30	2.2	30	84	10	84	52	1	8	37	1.42
59959422--59959462	2	21.0	2	90	5	66	51	0	0	48	1.00
59964719--59964764	22	2.1	22	87	0	65	15	13	0	71	1.14
59970627--59970689	14	4.3	14	73	15	56	39	3	1	55	1.25
59971121--59971197	38	2.0	38	100	0	154	23	7	23	45	1.78
59971781--59971819	20	2.0	19	85	5	51	12	5	2	79	1.00
59977121--59977174	26	2.1	25	89	3	81	53	1	0	44	1.11
59978086--59978131	21	2.2	21	88	0	65	43	0	0	56	0.99
59978097--59978128	15	2.1	16	94	5	57	43	0	0	56	0.99
59978758--59978809	25	2.1	24	82	10	61	61	3	1	32	1.25
59987175--59987379	41	5.0	40	84	8	202	28	19	24	27	1.99
59994769--59994967	41	4.9	40	84	6	204	27	19	25	28	1.99
59997529--59997570	21	2.0	20	86	4	57	50	2	0	47	1.14
60001887--60001959	30	2.4	30	81	6	85	53	20	5	20	1.65
60002671--60002709	19	2.0	20	95	5	71	23	20	5	51	1.67
60006549--60006589	21	2.0	21	85	9	57	31	0	4	63	1.15
60009111--60009187	29	2.6	28	76	15	84	48	6	16	28	1.71
60009810--60009996	92	2.0	92	90	2	295	28	23	20	26	1.99
60012137--60012183	19	2.5	19	85	0	67	21	19	34	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60012925--60012965	8	5.4	8	85	5	50	80	2	17	0	0.82
60020230--60020275	23	2.0	24	87	12	69	34	4	0	60	1.16
60023566--60023605	20	2.0	20	100	0	80	30	25	10	35	1.88
60028061--60028100	20	2.0	20	100	0	80	30	25	10	35	1.88
60028805--60028857	27	1.9	28	84	3	72	52	0	3	43	1.19
60032072--60032096	11	2.3	11	100	0	50	36	0	28	36	1.58
60035481--60035926	132	3.4	131	91	1	723	26	25	19	28	1.99
60037167--60037216	14	3.4	14	81	8	55	0	12	4	84	0.76
60043487--60043524	19	2.0	20	89	5	60	68	7	2	21	1.28
60047987--60048023	16	2.3	17	81	13	51	51	8	2	37	1.46
60050727--60050774	22	2.2	22	81	7	53	50	10	20	18	1.76
60053788--60055128	659	2.0	664	93	2	2287	41	17	11	29	1.85
60056736--60057000	103	2.6	104	90	3	417	29	29	20	19	1.97
60058724--60058752	14	2.0	15	93	6	51	75	3	13	6	1.13
60060374--60060421	21	2.3	20	79	10	51	18	33	27	20	1.96
60062754--60062782	3	10.0	3	92	7	51	68	0	31	0	0.89
60065680--60065704	13	1.9	13	100	0	50	56	4	0	40	1.18
60065811--60065869	3	20.3	3	78	13	61	66	1	1	30	1.12
60067185--60067691	132	3.8	132	88	1	689	28	27	16	28	1.97
60067405--60067809	175	2.3	176	91	2	670	28	26	16	28	1.97
60067257--60067807	132	4.2	131	88	3	481	29	26	16	27	1.97
60079880--60079904	13	1.9	13	100	0	50	56	4	0	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60080011--60080067	3	19.3	3	78	10	64	64	1	1	31	1.13
60094891--60094920	3	10.0	3	100	0	60	66	0	33	0	0.92
60101501--60101576	34	2.2	33	86	9	100	38	9	3	48	1.54
60103405--60103475	29	2.4	29	80	15	76	33	2	4	59	1.31
60107941--60108584	324	2.0	324	98	0	1252	34	15	21	28	1.94
60111881--60111958	38	2.0	39	92	2	131	52	26	2	17	1.58
60112092--60112154	17	3.5	17	69	12	54	34	3	12	49	1.57
60112089--60112163	37	2.0	37	94	0	114	36	4	14	45	1.64
60112168--60112219	9	5.8	9	93	0	68	25	9	25	40	1.85
60112168--60112219	18	2.9	18	91	0	77	25	9	25	40	1.85
60125006--60125047	18	2.3	18	87	0	57	54	2	2	40	1.26
60127224--60127259	17	2.1	17	100	0	72	36	16	11	36	1.84
60131433--60131471	16	2.4	16	83	8	53	84	7	7	0	0.77
60131950--60131999	23	2.2	22	85	7	64	68	0	16	16	1.22
60131950--60131985	16	2.2	16	90	0	54	72	0	13	13	1.13
60133361--60133983	87	7.1	86	66	14	238	26	17	24	30	1.97
60133287--60134324	131	7.9	131	92	0	1572	26	18	24	30	1.98
60133391--60134111	44	16.5	42	64	15	189	26	17	24	30	1.97
60133287--60134324	263	3.9	263	92	0	1603	26	18	24	30	1.98
60152013--60152045	14	2.4	14	94	0	57	12	0	15	72	1.12
60152636--60152688	26	2.0	26	85	7	72	22	7	5	64	1.41
60155529--60155571	17	2.6	16	82	10	50	46	4	2	46	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60155520--60155572	21	2.6	21	78	3	54	47	5	1	45	1.37
60156754--60156806	27	2.0	27	100	0	106	37	11	7	43	1.69
60162560--60162661	15	7.0	15	70	8	77	23	16	28	31	1.96
60168725--60168763	3	13.0	3	100	0	78	66	0	33	0	0.92
60169050--60169091	18	2.3	18	95	0	75	33	0	16	50	1.46
60169050--60169100	18	2.8	18	85	11	61	33	0	17	49	1.47
60169159--60169198	21	2.0	21	90	5	64	37	10	0	52	1.35
60169398--60169694	134	2.2	134	79	14	294	30	1	13	54	1.48
60176948--60177013	9	6.8	9	73	26	55	43	0	1	54	1.09
60176949--60177016	22	3.3	22	80	15	92	42	0	1	55	1.08
60178380--60178418	18	2.2	17	86	4	51	43	10	7	38	1.67
60178389--60178449	26	2.2	28	82	5	72	45	11	6	36	1.66
60179198--60179250	16	3.3	15	76	10	52	49	0	32	18	1.48
60187637--60187668	9	3.6	9	100	0	64	46	0	0	53	1.00
60190318--60190370	27	1.9	28	85	11	74	24	0	1	73	0.93
60190980--60191059	10	8.1	10	72	12	58	63	1	0	35	1.02
60190980--60191072	9	9.8	9	70	17	55	61	1	0	37	1.03
60190993--60191069	30	2.6	28	80	10	82	59	1	0	38	1.06
60191000--60191109	11	10.4	11	73	19	74	51	0	0	46	1.13
60191063--60191098	12	2.8	13	83	8	56	38	0	2	58	1.13
60191038--60191108	34	2.1	34	86	5	99	46	0	1	52	1.09
60191343--60191416	29	2.6	29	85	8	91	35	0	1	63	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60191372--60191420	18	2.6	19	83	9	64	34	0	0	65	0.93
60191372--60191432	19	3.2	19	86	6	79	32	1	0	65	1.02
60191388--60191448	18	3.4	17	84	8	59	27	3	0	68	1.05
60194066--60194102	2	18.5	2	100	0	74	51	0	48	0	1.00
60201716--60201785	29	2.3	29	85	4	86	34	7	14	44	1.72
60201716--60201795	31	2.6	30	84	5	90	32	6	13	47	1.68
60206728--60206764	18	2.1	18	94	0	65	10	48	27	13	1.75
60207934--60207977	18	2.4	18	92	7	72	15	0	50	34	1.45
60208284--60208316	9	3.7	9	100	0	66	54	0	0	45	0.99
60208435--60208469	14	2.5	14	90	0	52	42	11	5	40	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208