genome.fa.s18.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  156  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50822276--50822309	17	1.9	18	94	5	61	76	8	0	14	1.01
50824169--50824218	25	2.0	25	88	7	75	26	32	20	22	1.98
50824178--50824270	25	3.7	25	83	0	105	27	21	21	29	1.99
50824531--50824605	36	2.1	35	87	2	105	18	6	22	52	1.69
50824803--50824830	14	2.0	14	100	0	56	42	0	28	28	1.56
50825209--50825275	25	2.7	25	76	0	80	26	25	20	26	1.99
50836923--50837248	29	11.2	29	83	0	337	38	13	26	21	1.91
50839278--50839358	40	2.0	41	90	7	130	29	25	22	22	1.99
50842291--50842389	50	2.0	49	86	2	135	25	13	18	43	1.86
50845367--50845484	41	2.9	41	78	2	121	27	24	19	28	1.99
50846077--50846122	21	2.2	21	96	0	83	45	13	10	30	1.77
50852631--50852700	35	2.0	35	86	8	97	41	21	5	31	1.76
50852933--50853024	41	2.2	41	86	0	121	29	25	18	27	1.98
50852960--50853039	41	2.0	41	84	0	106	28	25	18	27	1.98
50853643--50853686	21	2.1	21	95	0	79	43	13	11	31	1.80
50859070--50859127	29	2.0	29	100	0	116	20	17	20	41	1.90
50860217--50860451	32	7.4	32	78	1	231	35	21	21	21	1.96
50860217--50860451	96	2.5	96	82	3	269	35	21	21	21	1.96
50862437--50862483	22	2.1	22	84	0	58	46	17	17	19	1.84
50862522--50862601	32	2.5	31	80	8	90	36	18	22	22	1.95
50862584--50862705	32	3.8	32	79	4	122	36	20	21	22	1.96
50862662--50862741	32	2.5	32	81	4	99	36	22	21	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50862741--50862797	26	2.2	26	93	0	96	36	22	21	19	1.95
50863031--50863121	27	3.4	27	81	0	74	24	19	20	35	1.96
50863043--50863215	27	6.4	27	74	6	134	24	20	17	37	1.94
50863044--50863191	55	2.7	54	82	9	174	25	20	16	37	1.93
50864170--50864330	75	2.1	75	90	4	254	34	27	16	21	1.94
50868751--50868896	23	6.3	23	79	6	143	42	20	13	23	1.88
50873837--50874020	79	2.3	81	84	7	234	25	22	27	25	2.00
50873837--50874020	40	4.6	39	80	9	194	25	22	27	25	2.00
50873837--50874053	79	2.7	78	80	11	210	26	21	27	24	1.99
50877615--50877699	23	3.7	23	76	4	64	14	17	20	48	1.81
50884162--50884188	13	2.1	13	100	0	54	29	14	7	48	1.71
50889508--50889548	12	3.4	12	93	0	64	26	17	24	31	1.97
50899199--50899260	31	2.0	31	100	0	124	6	29	0	64	1.18
50906559--50906599	5	8.0	5	97	2	73	21	0	0	78	0.76
50911072--50911168	38	2.6	38	86	0	131	29	24	15	29	1.96
50922496--50922555	22	2.7	23	75	14	63	53	0	11	35	1.38
50924489--50926040	82	18.9	82	94	0	2550	23	19	24	32	1.98
50926143--50926591	50	9.0	50	66	6	201	26	22	21	30	1.98
50926131--50926601	199	2.4	200	87	5	648	26	22	20	30	1.98
50926131--50926608	100	4.8	100	86	4	644	26	22	20	30	1.98
50926653--50927108	44	10.1	44	70	8	272	29	26	14	28	1.95
50926851--50927108	88	2.9	88	91	1	410	29	27	13	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50926731--50927041	132	2.4	131	83	4	367	29	26	14	30	1.95
50927615--50927810	108	1.8	108	86	2	286	45	11	17	25	1.81
50928606--50928643	17	2.2	18	85	4	51	2	5	10	81	0.94
50928630--50928678	11	4.4	11	80	14	55	6	10	4	79	1.03
50929949--50930073	62	2.0	62	93	0	214	32	6	20	40	1.78
50932105--50932165	22	2.7	23	75	9	63	54	0	11	34	1.37
50932302--50932338	7	5.1	7	90	3	56	70	0	2	27	1.01
50934328--50934423	30	3.2	30	73	10	90	50	13	6	30	1.66
50939609--50939710	50	2.0	50	98	0	195	32	21	10	35	1.88
50942097--50942154	29	2.0	29	93	0	98	43	15	18	22	1.88
50950612--50950645	14	2.5	14	90	4	52	70	0	14	14	1.17
50951935--50952220	50	5.7	50	73	3	270	30	19	24	25	1.99
50951916--50952288	100	3.7	100	93	0	604	29	20	23	26	1.99
50951916--50952240	50	6.5	50	70	0	245	29	21	23	25	1.99
50952428--50952568	44	3.2	45	70	16	134	34	15	23	26	1.95
50954575--50954604	13	2.4	12	94	5	51	36	0	0	63	0.95
50957323--50957382	30	2.0	30	96	0	111	31	3	8	56	1.45
50961894--50961931	19	2.1	18	85	9	51	73	2	0	23	0.95
50962195--50962239	9	4.7	10	91	5	67	77	0	13	8	0.98
50962182--50962236	24	2.3	23	81	9	58	78	0	12	9	0.97
50962195--50962239	19	2.3	20	85	11	67	77	0	13	8	0.98
50962755--50962825	23	3.1	23	74	6	72	40	14	14	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50962756--50962811	24	2.4	23	81	3	58	41	14	17	26	1.88
50962755--50963060	47	6.5	47	87	1	409	44	16	11	28	1.82
50963991--50964089	28	3.6	27	78	9	110	28	27	12	32	1.92
50968832--50968894	27	2.3	27	83	5	65	30	26	7	34	1.85
50968920--50969305	53	7.1	52	77	9	351	26	22	10	40	1.87
50969131--50969250	62	1.9	62	91	3	197	27	21	10	40	1.85
50969076--50969332	115	2.2	116	84	5	340	27	21	10	41	1.85
50969293--50969317	12	2.1	12	100	0	50	40	16	8	36	1.77
50970978--50971094	54	2.1	54	84	4	146	27	20	14	37	1.92
50970995--50971094	27	3.7	27	82	2	128	27	21	15	37	1.92
50984293--50984388	33	2.8	35	72	20	87	46	3	1	48	1.24
50984575--50984640	26	2.6	25	78	7	78	37	21	6	34	1.78
50989107--50989217	26	4.3	26	73	8	82	18	17	32	31	1.94
50989802--50989856	27	2.0	27	93	6	94	20	14	32	32	1.92
51000939--51000987	24	2.1	24	88	3	73	59	0	0	40	0.98
51000937--51001000	26	2.4	25	78	14	67	62	0	0	37	0.95
51000937--51000978	12	3.5	12	78	9	50	66	0	0	33	0.92
51000966--51001006	17	2.4	18	76	15	52	56	0	0	43	0.99
51005987--51006033	24	2.0	22	84	8	58	57	8	0	34	1.29
51011210--51011257	24	1.9	24	84	16	62	50	25	10	14	1.74
51015724--51016007	59	4.7	58	67	18	150	43	2	4	49	1.36
51015717--51016007	120	2.4	122	89	4	462	43	2	4	49	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51015951--51015987	19	2.0	19	85	15	51	45	0	0	54	1.00
51016223--51016291	16	4.2	16	94	3	120	37	36	0	26	1.57
51016223--51016291	33	2.1	32	94	2	120	37	36	0	26	1.57
51018334--51018413	32	2.5	32	87	0	115	27	36	16	20	1.93
51032091--51032210	63	1.9	63	81	3	143	22	19	28	30	1.98
51037236--51037299	27	2.4	26	81	2	74	39	3	4	53	1.38
51037375--51037451	38	2.0	38	92	5	129	50	6	14	28	1.67
51039888--51039929	19	2.2	19	87	8	59	54	0	0	45	0.99
51047504--51047532	15	1.9	15	100	0	58	34	0	10	55	1.34
51050453--51050557	31	3.4	31	85	0	138	20	4	39	35	1.74
51057160--51057283	45	2.7	45	85	3	160	24	17	10	47	1.79
51064325--51064368	21	2.1	21	82	0	52	34	31	6	27	1.83
51065211--51065249	19	2.1	19	100	0	78	48	20	5	25	1.70
51065701--51065762	32	1.9	32	100	0	124	33	12	19	33	1.90
51071001--51071263	30	8.8	30	82	0	292	33	19	15	31	1.93
51071005--51071222	60	3.6	60	89	0	328	33	20	16	30	1.94
51074470--51074607	35	3.9	35	83	1	152	33	15	24	26	1.95
51074477--51074622	70	2.1	70	80	5	161	34	16	23	25	1.95
51074523--51074629	35	3.1	33	75	17	92	36	16	23	23	1.94
51081840--51081905	29	2.3	29	78	0	78	19	39	28	12	1.88
51087823--51087877	22	2.5	23	85	8	78	45	16	14	23	1.84
51111149--51111255	44	2.5	44	93	3	182	44	2	24	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51115669--51115722	27	2.0	26	85	3	72	42	11	22	24	1.85
51122807--51122838	6	5.3	6	100	0	64	84	0	0	15	0.63
51122897--51123015	20	5.9	20	70	12	73	50	5	10	32	1.61
51123080--51123118	20	2.0	20	89	0	60	38	7	12	41	1.72
51123214--51123568	20	17.8	20	68	10	172	36	6	16	40	1.74
51123378--51123568	80	2.4	80	82	5	224	36	4	17	41	1.71
51123669--51123718	20	2.5	19	84	9	64	38	4	20	38	1.71
51123534--51123818	149	1.9	150	83	2	376	40	3	17	37	1.68
51123754--51123807	21	2.6	21	88	2	74	51	1	14	31	1.53
51123770--51123828	20	2.9	20	82	7	66	42	1	18	37	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208