genome.fa.s18.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  154  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50035784--50035880	37	2.8	34	79	13	99	61	3	2	32	1.23
50035777--50035874	9	10.7	9	70	16	60	62	3	2	32	1.22
50036335--50036601	9	27.8	9	64	18	78	32	2	3	60	1.30
50036378--50036429	22	2.4	21	80	6	59	32	1	7	57	1.38
50036465--50036517	21	2.8	18	76	17	63	39	1	0	58	1.09
50039174--50039200	11	2.5	11	100	0	54	70	0	0	29	0.88
50039293--50039332	20	1.9	20	90	10	62	30	0	2	67	1.04
50039944--50039987	23	1.9	23	95	0	79	43	0	13	43	1.44
50042692--50042728	9	4.1	9	92	0	65	45	13	10	29	1.77
50042766--50042806	21	2.0	21	85	0	55	19	31	0	48	1.49
50044181--50044279	51	1.9	51	91	0	162	31	8	17	43	1.78
50049994--50050025	17	1.9	16	93	6	55	46	3	0	50	1.17
50055348--50055405	6	9.3	6	76	14	55	68	1	13	15	1.28
50055562--50055605	23	1.9	24	86	9	65	38	0	18	43	1.50
50059794--50059862	36	1.9	36	96	0	129	39	13	18	28	1.88
50062870--50063048	27	6.6	27	80	6	182	28	15	27	29	1.96
50062872--50063022	82	1.9	81	86	6	216	28	15	27	28	1.96
50062868--50063048	82	2.2	81	79	6	206	28	14	27	29	1.96
50067940--50067981	14	2.9	15	79	10	52	66	0	9	23	1.21
50068787--50068840	21	2.6	21	77	16	58	22	25	27	24	2.00
50076483--50076528	21	2.1	21	84	4	56	26	19	30	23	1.98
50079211--50079237	14	1.9	14	100	0	54	66	7	0	25	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50080473--50080585	57	2.0	57	87	5	165	47	6	17	28	1.72
50088708--50088787	23	3.5	23	91	3	126	47	16	5	31	1.68
50089895--50089919	13	1.9	13	100	0	50	56	4	16	24	1.57
50092146--50092187	20	2.1	20	95	0	75	52	19	2	26	1.58
50093927--50093959	17	2.0	17	94	5	59	45	6	18	30	1.73
50100163--50100392	50	4.5	51	80	6	209	30	25	14	29	1.95
50100163--50100447	51	5.6	50	79	6	234	31	25	13	29	1.94
50100213--50100447	101	2.3	102	91	1	373	31	27	12	28	1.93
50103589--50103735	41	3.6	40	82	3	168	21	29	16	32	1.95
50110816--50110933	40	2.9	41	83	2	175	22	27	14	35	1.93
50110801--50110933	41	3.3	41	81	4	162	23	26	14	36	1.93
50123301--50123334	17	2.0	17	94	0	59	61	8	11	17	1.54
50130773--50130870	31	3.3	30	73	9	85	41	5	20	32	1.74
50137899--50137952	23	2.3	23	100	0	108	37	20	18	24	1.94
50138082--50138147	20	3.4	19	83	8	71	54	6	1	37	1.34
50142837--50142954	59	2.0	59	98	0	227	46	11	9	32	1.72
50144867--50144945	27	2.9	27	73	0	86	35	25	10	29	1.88
50144867--50144960	36	2.7	36	85	4	122	36	24	9	29	1.87
50144867--50144948	18	4.6	18	92	0	119	34	25	10	29	1.90
50146348--50146412	21	3.2	20	75	12	62	30	0	0	69	0.89
50146362--50146419	21	2.8	21	76	5	64	32	0	0	67	0.91
50156061--50156120	30	2.0	30	86	0	84	21	35	26	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50158359--50158476	43	2.7	43	77	10	116	32	27	19	21	1.97
50159780--50159826	19	2.5	19	80	16	53	29	12	2	55	1.49
50160546--50160582	18	2.1	18	94	0	65	29	35	2	32	1.72
50171324--50171376	21	2.5	21	81	0	61	47	1	5	45	1.37
50171932--50171982	22	2.4	22	77	9	52	39	23	3	33	1.73
50173377--50173423	21	2.1	23	92	7	80	29	8	12	48	1.71
50180887--50180963	29	2.7	28	84	7	93	35	6	25	32	1.82
50180894--50180975	29	2.8	29	76	7	78	36	6	26	30	1.81
50181510--50181534	13	1.9	13	100	0	50	12	8	16	64	1.49
50184989--50185039	24	2.1	24	86	13	70	21	17	17	43	1.88
50185022--50185083	25	2.5	24	77	10	63	20	19	22	37	1.95
50187945--50187984	9	4.1	9	82	17	53	45	2	30	22	1.66
50193853--50193888	3	12.0	3	100	0	72	66	33	0	0	0.92
50195452--50195502	13	4.2	12	75	10	50	1	25	0	72	0.95
50195451--50195502	18	2.9	18	77	5	61	3	25	0	71	1.03
50195572--50195603	11	2.9	11	90	0	55	65	0	0	34	0.93
50195714--50195764	13	3.9	13	77	10	59	60	1	0	37	1.08
50198291--50198328	16	2.2	18	86	9	53	47	2	2	47	1.30
50200192--50200300	55	2.0	55	98	0	209	34	0	17	47	1.48
50202621--50202685	32	2.0	32	96	0	121	63	9	7	20	1.49
50204165--50204216	27	1.9	27	84	7	70	42	3	3	50	1.39
50206728--50206759	14	2.3	14	100	0	64	31	46	15	6	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50211851--50211882	14	2.3	14	94	0	55	31	43	15	9	1.78
50217310--50217409	39	2.6	39	86	0	146	45	18	3	34	1.64
50225560--50225694	29	4.7	29	81	2	155	22	27	11	39	1.88
50225560--50225694	58	2.3	58	88	2	200	22	27	11	39	1.88
50225679--50225749	29	2.4	29	85	0	88	32	22	8	36	1.84
50225592--50225720	58	2.2	58	83	2	161	24	26	10	38	1.88
50226427--50226509	9	9.2	9	89	5	132	40	22	9	26	1.85
50228247--50228363	40	2.9	40	96	0	207	34	23	20	21	1.97
50228414--50228531	42	2.9	41	92	2	191	16	22	33	27	1.96
50228837--50228966	14	9.2	14	74	5	91	21	0	31	46	1.57
50228837--50228966	7	18.4	7	72	7	75	21	0	31	46	1.57
50229159--50229200	16	2.5	17	92	7	68	54	0	0	45	0.99
50229687--50229734	21	2.3	21	100	0	96	29	8	20	41	1.81
50233980--50234065	45	2.0	43	86	4	118	24	19	25	30	1.98
50234048--50234249	42	4.8	42	89	1	262	22	19	31	26	1.98
50237085--50237141	30	1.9	30	85	7	80	33	7	1	57	1.36
50237211--50237275	27	2.7	24	75	15	62	35	9	4	50	1.55
50237391--50237430	20	2.1	18	86	13	53	25	15	2	57	1.50
50249350--50250172	98	8.4	98	91	0	1268	33	24	20	22	1.97
50251837--50251876	20	2.1	18	86	13	53	25	15	2	57	1.50
50253218--50253259	21	2.0	21	100	0	84	28	23	14	33	1.94
50255092--50255143	24	2.2	24	85	0	68	53	5	3	36	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50260536--50260726	95	2.0	95	87	0	274	30	23	21	24	1.99
50263861--50263912	24	2.2	24	89	0	77	50	7	5	36	1.55
50263885--50264594	354	2.0	353	90	1	1129	37	21	10	29	1.88
50267194--50267253	30	2.0	31	83	9	79	40	0	38	21	1.54
50267793--50267820	4	7.0	4	100	0	56	75	0	0	25	0.81
50272603--50272627	12	2.1	12	100	0	50	52	16	0	32	1.44
50286510--50286541	16	2.0	16	93	0	55	71	6	0	21	1.07
50287668--50288133	221	2.1	221	80	5	505	24	19	22	34	1.96
50288723--50288772	15	3.3	15	75	10	57	58	4	10	28	1.49
50288723--50288779	30	1.9	30	92	0	96	54	5	10	29	1.56
50298245--50298421	27	6.5	27	82	1	165	26	14	28	30	1.95
50298241--50298421	82	2.2	81	80	2	202	27	14	27	30	1.95
50320070--50320246	27	6.5	27	82	1	165	26	14	28	30	1.95
50320066--50320246	82	2.2	81	80	2	202	27	14	27	30	1.95
50328616--50328666	25	2.0	26	92	3	86	27	35	23	13	1.93
50328584--50328849	105	2.6	103	90	4	419	29	30	20	19	1.97
50336193--50336257	30	2.2	29	81	8	76	30	27	6	35	1.81
50336200--50336257	30	1.9	30	85	0	80	31	24	6	37	1.82
50340415--50340513	52	1.9	50	83	4	126	39	5	5	50	1.46
50342353--50342408	29	1.9	29	85	7	78	23	8	3	64	1.38
50349706--50349748	22	2.0	22	85	0	59	18	13	18	48	1.80
50355083--50355112	4	7.8	4	92	7	53	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50356458--50356502	22	2.0	22	91	0	72	13	17	17	51	1.77
50357377--50357402	13	2.0	13	100	0	52	38	7	7	46	1.61
50374433--50374485	23	2.4	22	76	20	56	9	18	1	69	1.25
50379382--50379425	12	3.5	13	84	9	56	70	0	0	29	0.88
50379701--50379767	28	2.5	27	78	21	79	74	0	17	7	1.04
50379733--50379778	22	2.2	20	84	11	56	73	0	15	10	1.08
50380028--50380095	33	2.1	33	100	0	136	52	8	11	26	1.67
50381885--50381918	16	2.1	16	88	5	50	8	0	14	76	1.01
50384879--50384911	13	2.5	13	95	0	57	57	0	21	21	1.41
50387500--50387525	11	2.4	11	100	0	52	26	0	0	73	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208