genome.fa.s18.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  181  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56910128--56910185	31	1.9	31	86	10	84	43	0	1	55	1.10
56914297--56914391	45	2.1	45	98	0	181	45	6	25	23	1.76
56919527--56919580	7	7.6	7	81	4	63	20	0	29	50	1.49
56919483--56919580	22	4.5	22	75	12	78	22	1	29	46	1.58
56919464--56919580	14	8.2	14	73	12	69	22	0	28	48	1.56
56922091--56922156	29	2.3	29	72	0	69	27	13	16	42	1.86
56925846--56926069	23	8.7	23	71	23	128	32	2	23	41	1.66
56925876--56926086	29	7.8	28	74	15	151	32	2	23	42	1.67
56925879--56925969	30	3.1	28	82	7	94	28	3	26	41	1.71
56925867--56926086	28	8.1	28	75	14	167	33	2	22	42	1.66
56925938--56926069	50	2.6	50	90	1	201	32	2	21	43	1.65
56928232--56928265	15	2.3	15	90	5	52	67	5	0	26	1.13
56928455--56928496	22	1.9	22	90	0	66	33	0	33	33	1.58
56928497--56928567	22	3.2	22	86	7	90	36	1	25	36	1.65
56929107--56929136	12	2.5	12	100	0	60	26	43	6	23	1.78
56947251--56947277	8	3.4	8	100	0	54	22	0	0	77	0.76
56954240--56954306	23	2.9	23	70	18	59	68	0	2	28	1.04
56958055--56958107	23	2.4	22	76	20	56	9	18	1	69	1.25
56971097--56971163	33	2.0	33	88	0	98	35	17	28	17	1.93
56978995--56979037	21	2.0	21	100	0	86	53	18	0	27	1.45
56979322--56979353	16	2.0	16	100	0	64	25	6	6	62	1.42
56981945--56982099	66	2.3	65	78	7	152	20	15	26	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56994901--56994930	14	2.1	14	93	0	51	23	0	0	76	0.78
56997147--56997202	27	2.2	25	83	6	67	64	0	3	32	1.11
57008566--57008619	21	2.5	22	80	14	60	31	1	1	64	1.14
57008569--57008626	17	3.5	16	79	6	62	29	1	1	67	1.11
57012117--57012173	27	2.2	26	90	6	89	43	17	0	38	1.49
57012251--57012380	58	2.2	58	80	10	149	31	21	26	20	1.98
57014982--57015038	28	2.0	28	96	0	105	42	10	26	21	1.85
57016391--57016429	20	2.1	18	85	9	51	76	5	2	15	1.06
57016826--57016883	29	2.0	29	83	6	73	58	5	3	32	1.37
57018248--57018679	44	10.0	43	70	3	274	24	23	23	28	1.99
57018249--57018679	87	5.0	87	94	0	747	24	23	23	28	2.00
57018734--57019648	88	10.4	88	89	0	1280	20	24	27	27	1.99
57018928--57019598	44	15.2	44	61	5	163	20	24	27	27	1.99
57020864--57020905	6	6.8	6	82	12	50	0	16	0	83	0.65
57020865--57020905	13	3.2	13	89	3	66	0	14	0	85	0.60
57020865--57020902	7	5.7	7	84	9	53	0	15	0	84	0.63
57025912--57025972	27	2.3	27	83	13	74	67	3	3	26	1.22
57028013--57028192	61	2.9	59	80	7	164	41	16	5	37	1.71
57028041--57028194	61	2.5	61	79	3	166	40	14	5	39	1.68
57049822--57049846	12	2.1	12	100	0	50	32	8	16	44	1.76
57055348--57055400	26	2.0	28	85	7	74	45	13	20	20	1.84
57057519--57057594	40	1.9	40	88	0	116	22	26	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57066209--57066261	26	2.0	27	85	7	72	47	11	18	22	1.81
57068522--57068569	11	4.1	11	75	15	51	52	2	0	45	1.12
57074657--57074689	16	2.1	16	94	0	57	30	0	18	51	1.46
57074725--57075151	9	49.8	9	67	20	102	37	3	14	44	1.61
57074727--57074857	16	7.8	16	71	13	77	37	1	17	43	1.59
57074761--57074845	34	2.5	33	79	9	91	41	1	14	43	1.52
57074941--57075029	16	5.7	16	89	5	128	31	0	23	44	1.54
57074953--57075024	7	9.4	7	77	16	72	31	0	23	44	1.54
57074941--57074996	23	2.4	23	73	5	60	28	0	25	46	1.53
57075009--57075151	34	4.5	31	76	11	146	39	4	12	44	1.62
57075024--57075152	65	2.0	65	98	0	249	39	5	10	44	1.63
57080050--57080228	41	4.4	41	90	3	263	38	26	22	12	1.89
57080050--57080228	80	2.2	82	87	3	263	38	26	22	12	1.89
57080286--57080384	40	2.5	40	80	6	112	20	28	22	29	1.98
57082129--57082280	67	2.2	66	75	5	144	27	18	22	31	1.97
57082885--57083081	90	2.2	91	80	8	213	42	16	8	32	1.77
57083155--57083201	21	2.3	21	88	3	78	29	19	14	36	1.92
57083203--57083410	89	2.3	89	81	5	242	37	11	18	32	1.86
57083273--57083444	89	1.9	90	85	1	238	34	10	19	34	1.86
57084900--57084964	33	2.0	33	87	6	96	46	1	0	52	1.10
57087592--57087644	26	2.0	28	88	7	83	45	11	20	22	1.83
57089389--57089414	13	2.0	13	100	0	52	38	7	7	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57089570--57089614	22	2.0	22	87	8	65	40	0	2	57	1.11
57098325--57098642	41	7.8	39	72	13	141	16	23	22	37	1.94
57098324--57098607	82	3.5	80	82	6	336	15	23	22	38	1.93
57098323--57098585	123	2.1	123	77	6	282	15	23	22	38	1.92
57099154--57099191	15	2.5	15	86	0	58	21	0	42	36	1.53
57099127--57099194	15	4.9	14	74	13	52	23	0	35	41	1.55
57100893--57100929	10	3.7	10	92	0	65	43	0	13	43	1.44
57103567--57103591	13	1.9	13	100	0	50	40	24	0	36	1.55
57103656--57103836	34	5.7	33	69	19	134	48	10	0	40	1.42
57103681--57103731	22	2.4	22	90	3	86	49	9	0	41	1.36
57103761--57103795	13	2.7	13	95	0	61	51	8	0	40	1.33
57103705--57103834	69	1.9	69	96	0	242	47	10	0	40	1.44
57103656--57103782	56	2.3	56	100	0	254	48	10	0	40	1.37
57103708--57103837	34	3.8	34	83	9	174	48	10	0	40	1.44
57103860--57103990	9	15.9	9	70	17	79	45	16	2	35	1.61
57103866--57103985	16	7.9	16	67	19	87	45	16	1	35	1.58
57103860--57103977	25	4.9	25	72	13	86	46	16	1	35	1.57
57109439--57109585	66	2.2	66	84	4	181	40	16	29	14	1.88
57109564--57109626	21	3.0	21	76	0	63	34	19	41	4	1.72
57109970--57110325	43	8.3	43	76	3	304	23	19	29	27	1.98
57109970--57110222	130	2.0	129	83	5	323	22	16	30	30	1.96
57109990--57110242	86	2.9	86	88	2	373	22	17	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57110271--57110367	42	2.3	41	82	8	106	21	28	25	23	1.99
57111929--57112040	27	3.8	32	85	14	145	20	1	33	44	1.62
57112337--57112377	21	2.0	21	85	9	57	58	2	14	24	1.49
57117360--57117424	28	2.3	28	86	2	94	36	9	3	50	1.50
57119576--57119639	31	2.0	33	84	6	87	53	21	1	23	1.55
57122493--57122539	21	2.2	22	92	3	78	21	38	19	21	1.94
57129249--57129295	8	5.6	8	80	9	58	0	27	0	72	0.85
57130356--57130412	25	2.5	21	75	24	62	54	0	0	45	0.99
57131075--57131180	6	17.7	6	82	0	95	47	12	16	23	1.81
57131153--57131192	6	6.7	6	91	0	53	47	5	20	27	1.70
57135027--57135147	44	2.8	42	78	13	138	30	27	19	23	1.98
57136034--57136077	15	3.1	14	80	12	54	43	6	0	50	1.29
57147036--57147069	15	2.3	15	100	0	68	47	44	0	8	1.34
57147514--57147553	20	2.0	20	90	9	64	5	45	47	2	1.38
57148047--57148102	3	18.7	3	92	0	76	32	5	1	60	1.29
57160803--57160917	46	2.5	46	83	5	137	33	20	19	26	1.97
57160800--57161331	44	12.3	43	72	10	196	30	20	21	27	1.98
57161020--57161226	87	2.4	86	80	5	231	29	20	24	25	1.99
57161061--57161334	129	2.1	128	87	3	381	29	21	21	27	1.98
57161527--57161579	15	3.5	15	100	0	106	47	45	0	7	1.31
57161535--57161577	8	5.6	8	78	10	54	46	48	0	4	1.22
57162586--57162638	3	17.7	3	92	0	70	32	5	1	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57165402--57165440	14	3.0	13	85	10	53	58	0	0	41	0.98
57165402--57165442	13	3.1	14	89	6	59	58	0	0	41	0.98
57167552--57167644	32	2.9	32	91	0	150	51	17	4	26	1.63
57167644--57167700	16	3.5	16	72	11	53	49	17	1	31	1.57
57172730--57172866	51	2.7	51	79	0	175	40	13	6	39	1.71
57175565--57175622	22	2.7	21	82	15	73	37	25	13	22	1.91
57177596--57177643	20	2.4	20	78	0	60	45	2	14	37	1.57
57179611--57179635	11	2.3	11	100	0	50	20	16	28	36	1.93
57184769--57184800	14	2.4	14	90	10	50	40	0	0	59	0.97
57185276--57185309	16	2.1	16	100	0	68	11	32	5	50	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208