genome.fa.s18.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  140  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45629405--45629524	45	2.7	46	75	16	128	27	29	19	24	1.98
45629732--45630089	100	3.6	100	84	1	475	25	22	21	31	1.98
45631764--45631796	14	2.3	15	89	5	50	24	33	15	27	1.95
45634151--45634373	40	5.6	40	83	6	213	24	20	27	27	1.99
45634151--45634375	80	2.8	79	82	7	242	24	20	28	27	1.99
45634226--45634408	79	2.3	80	81	1	217	25	20	27	26	1.99
45634151--45634408	119	2.2	120	80	4	281	25	20	27	26	1.99
45647785--45647829	20	2.2	20	88	7	65	64	4	0	31	1.13
45658370--45658448	37	2.1	37	90	0	122	25	31	18	24	1.98
45658567--45658875	47	6.7	47	87	6	438	28	31	8	31	1.87
45658705--45658875	86	2.0	86	93	2	290	29	29	8	31	1.87
45658752--45658835	39	2.2	39	97	0	159	30	30	7	30	1.84
45662630--45662809	40	4.5	40	81	4	186	24	27	21	26	1.99
45663126--45663198	29	2.5	29	88	4	103	26	31	16	26	1.96
45663180--45663282	43	2.4	43	100	0	206	26	35	15	22	1.94
45665139--45665217	37	2.1	37	88	0	113	25	30	18	25	1.98
45665336--45665644	47	6.7	47	87	6	438	28	31	8	31	1.87
45665474--45665644	86	2.0	86	93	2	290	29	29	8	31	1.87
45665521--45665604	39	2.2	39	97	0	159	30	30	7	30	1.84
45668090--45668141	24	2.2	24	89	0	77	55	9	1	32	1.43
45670059--45670110	24	2.2	24	89	0	77	55	9	1	32	1.43
45673955--45673995	21	2.0	21	85	0	55	19	21	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45699823--45699857	16	2.1	17	94	5	63	68	0	20	11	1.20
45715121--45715841	359	2.0	359	98	0	1406	36	18	22	22	1.95
45729560--45729597	18	2.1	18	85	9	51	15	31	23	28	1.96
45730175--45730457	65	4.4	64	82	4	284	33	14	14	37	1.87
45730174--45730457	128	2.2	129	81	2	320	33	14	14	36	1.87
45734802--45734889	44	2.0	44	100	0	176	54	2	27	15	1.53
45735143--45735196	26	2.1	26	89	0	81	46	11	14	27	1.79
45735637--45735683	20	2.2	21	92	7	78	40	6	19	34	1.77
45738516--45738742	101	2.2	101	80	11	268	25	17	27	29	1.97
45738554--45738738	51	3.7	50	82	6	196	23	18	27	30	1.98
45738660--45738740	26	3.2	26	65	28	73	22	14	29	33	1.94
45738962--45738993	16	2.0	16	93	0	55	59	0	15	25	1.36
45750100--45750180	26	3.1	26	85	1	99	20	13	27	38	1.90
45757571--45757647	26	3.0	26	79	7	84	19	10	24	45	1.81
45757582--45757650	26	2.7	26	86	0	93	20	11	26	42	1.86
45758224--45758306	11	7.5	12	76	20	60	59	0	2	38	1.11
45758209--45758276	22	3.2	21	78	11	77	60	0	1	38	1.06
45758203--45758306	52	2.0	53	96	1	192	57	0	1	40	1.10
45758240--45758386	40	3.7	41	90	5	230	59	0	2	38	1.12
45758321--45758387	10	6.6	10	73	14	57	56	0	4	38	1.19
45775290--45775541	35	7.2	35	85	1	326	18	14	28	38	1.90
45775282--45775541	105	2.5	105	87	1	360	17	14	28	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45776379--45776403	13	1.9	13	100	0	50	32	0	16	52	1.44
45779194--45779340	50	2.8	51	82	6	154	28	22	29	19	1.98
45779235--45779340	50	2.1	50	89	0	158	29	23	29	17	1.97
45779631--45779669	20	2.0	20	90	10	62	56	5	23	15	1.59
45788684--45788727	17	2.5	17	88	3	70	50	9	27	13	1.72
45791403--45791438	6	6.0	6	86	0	54	77	2	19	0	0.88
45793519--45793548	15	1.9	16	93	6	53	6	13	3	76	1.11
45793603--45793652	22	2.3	22	96	0	91	34	4	20	42	1.70
45810660--45810711	18	2.8	18	77	11	52	38	9	0	51	1.35
45811610--45811647	20	2.0	19	85	10	51	65	5	10	18	1.41
45811823--45811882	26	2.3	28	72	21	67	50	10	11	28	1.71
45815464--45815622	72	2.2	72	92	2	257	16	29	26	27	1.97
45825801--45826022	40	5.7	40	83	9	248	26	22	26	24	2.00
45825874--45826055	79	2.3	78	80	9	185	27	21	25	24	2.00
45836472--45836505	10	3.4	10	83	0	50	11	2	0	85	0.71
45842149--45842193	18	2.4	18	88	3	63	46	0	15	37	1.46
45842154--45842207	18	2.9	18	83	5	54	42	3	18	35	1.68
45847707--45847739	16	2.0	17	88	5	50	27	0	9	63	1.24
45848974--45849022	18	2.7	18	81	6	55	46	2	14	36	1.56
45851970--45852096	17	7.5	17	78	3	103	41	13	9	35	1.77
45851970--45852098	51	2.5	51	83	5	145	41	13	9	35	1.76
45852599--45852834	68	3.4	68	71	9	217	27	19	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45852374--45852878	276	1.8	276	82	4	642	28	18	22	30	1.98
45852404--45852879	138	3.4	138	83	2	580	27	18	23	30	1.98
45854068--45854252	51	3.6	51	77	2	160	25	17	25	30	1.97
45854256--45854359	46	2.3	43	84	12	129	25	18	23	33	1.96
45854455--45854527	37	1.9	38	83	8	96	45	1	20	32	1.60
45859203--45859241	18	2.2	18	90	0	60	38	17	2	41	1.64
45859694--45859813	35	3.4	35	85	1	159	40	33	10	16	1.82
45868047--45868080	12	3.0	12	91	8	54	38	0	0	61	0.96
45868540--45868613	15	4.6	18	90	6	83	22	0	16	60	1.35
45868570--45868618	5	9.8	5	100	0	98	20	0	18	61	1.35
45868685--45868772	31	2.8	31	87	3	124	30	1	15	52	1.51
45868868--45868897	15	2.0	15	93	0	51	26	0	36	36	1.57
45870456--45870517	26	2.4	26	91	2	99	38	6	17	37	1.76
45871309--45871342	15	2.3	15	100	0	68	50	0	32	17	1.47
45876373--45876430	27	2.2	26	84	3	71	50	8	8	32	1.64
45876459--45876545	38	2.3	38	89	0	129	44	11	6	36	1.67
45880402--45880547	19	7.8	19	67	13	63	59	2	5	32	1.34
45880463--45880488	10	2.6	10	100	0	52	53	0	0	46	1.00
45880419--45880546	56	2.3	55	82	6	150	59	3	4	32	1.34
45880694--45880743	19	2.6	19	70	0	55	34	4	2	60	1.27
45880706--45880831	47	2.7	45	79	13	121	31	1	1	65	1.12
45883429--45883458	15	2.0	15	100	0	60	20	13	20	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45893901--45893945	16	2.8	17	77	12	51	40	15	11	33	1.83
45898032--45898107	36	2.1	36	82	4	91	38	22	9	30	1.85
45898290--45898402	41	2.8	40	91	2	181	21	27	23	28	1.99
45898291--45898432	41	3.5	40	83	12	166	22	26	22	28	1.99
45898291--45898443	82	1.9	81	81	13	188	22	26	23	28	1.99
45904508--45904692	101	1.8	102	91	5	313	24	18	27	29	1.98
45904505--45904690	51	3.7	51	84	3	243	24	18	27	29	1.98
45904696--45904794	46	2.2	43	82	12	119	23	19	25	32	1.97
45904918--45904949	16	2.0	16	93	0	55	59	0	15	25	1.36
45911949--45912062	42	2.7	42	81	6	135	15	22	18	42	1.88
45911985--45912102	41	2.8	39	81	7	101	17	23	17	40	1.91
45912186--45912240	21	2.6	21	79	0	74	12	27	20	40	1.88
45912106--45912239	42	3.2	41	82	2	142	16	22	19	41	1.90
45914272--45914449	27	6.6	27	81	5	171	29	28	15	26	1.96
45914293--45914448	82	1.9	81	85	3	215	28	28	16	26	1.97
45927594--45927771	27	6.6	27	80	7	164	29	27	15	27	1.96
45927615--45927769	82	1.9	81	85	4	213	29	27	16	27	1.97
45930820--45930929	25	4.4	25	74	6	89	29	15	31	23	1.95
45930820--45930929	50	2.2	49	80	6	123	29	15	31	23	1.95
45933640--45933671	11	2.9	11	95	0	55	71	0	0	28	0.86
45935643--45935699	28	2.0	28	90	6	89	56	0	5	38	1.22
45936596--45936711	43	2.7	43	84	10	157	26	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45937563--45937733	23	7.3	23	74	3	171	25	18	14	41	1.88
45937579--45937746	24	7.1	24	73	4	162	25	17	16	41	1.89
45937563--45937746	47	3.9	47	98	0	350	26	17	15	41	1.88
45937786--45937837	23	2.3	23	86	6	70	26	15	15	42	1.87
45937824--45937907	23	3.5	25	78	15	81	32	13	19	35	1.90
45937751--45937907	71	2.2	70	82	6	185	28	12	19	39	1.88
45939475--45939506	13	2.3	15	89	10	50	68	0	3	28	1.04
45939475--45939507	14	2.3	15	89	5	50	69	0	3	27	1.03
45943039--45943083	8	5.4	8	82	10	54	35	17	11	35	1.86
45943048--45943120	9	8.2	9	84	3	94	34	16	9	39	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208