Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  199  of  208  ( 24943 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61523326--61523361
18
2.1
17
90
10
56
52
0
0
47
1.00
61523326--61523374
18
2.7
19
82
14
52
55
0
0
44
0.99
61523238--61523421
59
3.1
59
66
22
166
48
7
1
42
1.40
61523248--61523434
61
3.1
61
68
14
179
49
7
1
41
1.41
61523536--61523596
28
2.2
28
85
5
81
50
3
0
45
1.17
61523436--61523714
91
2.9
93
82
8
307
48
3
2
44
1.34
61523511--61523718
91
2.3
91
88
0
317
46
4
2
45
1.39
61523536--61523678
44
3.2
44
67
20
114
47
4
2
46
1.33
61523564--61523699
44
3.0
47
68
22
133
48
5
2
44
1.37
61527221--61527326
43
2.5
41
86
9
142
44
2
4
48
1.38
61527248--61527320
23
3.3
23
66
11
71
47
4
2
45
1.36
61528880--61528934
22
2.5
22
88
5
76
41
23
12
21
1.88
61535356--61535417
14
4.4
14
76
21
51
66
0
0
33
0.92
61536394--61536631
46
5.2
46
91
1
383
29
21
14
34
1.93
61544758--61544787
15
2.0
15
93
0
51
43
3
0
53
1.17
61547783--61547813
11
2.8
11
95
0
53
19
48
3
29
1.64
61548364--61548414
18
2.8
18
93
0
84
27
25
15
31
1.96
61552467--61552497
11
2.8
11
95
0
53
19
48
3
29
1.64
61554849--61554892
13
3.4
13
77
0
52
36
6
27
29
1.83
61555223--61555664
235
1.9
235
93
0
767
30
13
17
38
1.88
61556682--61556719
16
2.4
16
90
0
58
34
2
34
28
1.71
61556698--61556795
44
2.2
44
87
8
137
31
5
28
34
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61556957--61556991
17
2.0
18
94
5
63
60
0
0
40
0.97
61557024--61557067
22
2.0
23
90
4
72
63
2
0
34
1.07
61556944--61557294
120
3.0
120
89
5
549
52
4
1
41
1.29
61557256--61557296
21
2.0
21
100
0
82
56
9
0
34
1.32
61560540--61560647
23
4.9
23
83
8
145
36
24
22
17
1.95
61560812--61560856
3
15.0
3
100
0
90
66
0
0
33
0.92
61566016--61566090
32
2.4
32
84
10
93
52
1
0
46
1.09
61571048--61571094
22
2.2
23
82
17
66
61
8
0
29
1.25
61571050--61571121
21
3.7
20
78
15
71
59
6
0
33
1.24
61571117--61571156
18
2.2
18
90
0
62
60
5
0
35
1.19
61571160--61571202
19
2.3
18
84
11
52
65
2
4
27
1.25
61577199--61577238
21
1.9
20
90
10
62
10
22
0
67
1.20
61577195--61577242
21
2.6
18
76
20
53
10
20
0
68
1.18
61577409--61577500
13
7.1
13
75
3
87
33
6
23
35
1.81
61577409--61577481
26
2.8
26
85
0
101
32
6
26
34
1.83
61586333--61586379
21
2.2
22
92
3
78
21
19
38
21
1.94
61588824--61588876
26
2.0
26
96
0
97
30
37
15
16
1.90
61591940--61591979
21
1.9
21
84
0
53
42
7
15
35
1.75
61603356--61603382
11
2.5
11
100
0
54
59
0
0
40
0.98
61603998--61604036
12
3.6
12
74
25
50
53
10
0
35
1.35
61603991--61604121
20
6.4
20
74
20
103
55
8
0
35
1.35
61604127--61604169
20
2.2
19
87
4
59
69
0
4
25
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61615526--61615584
27
2.2
27
82
14
70
8
18
3
69
1.28
61616403--61616428
12
2.2
12
100
0
52
34
7
34
23
1.83
61617238--61617263
12
2.2
12
100
0
52
34
7
34
23
1.83
61618885--61618926
21
2.0
21
81
9
50
7
21
23
47
1.75
61646372--61646412
21
2.0
21
90
0
64
29
21
29
19
1.98
61650921--61651333
204
2.0
204
86
0
567
26
28
14
30
1.95
61651125--61652351
228
5.5
227
86
2
1648
25
27
16
30
1.97
61651120--61652351
450
2.8
450
87
3
1708
25
27
16
30
1.97
61652881--61653233
176
2.0
174
83
2
438
35
18
16
28
1.93
61653267--61653323
29
2.0
29
89
0
87
28
17
8
45
1.78
61654280--61654326
25
2.0
24
83
8
60
17
23
12
46
1.82
61655245--61655293
23
2.3
21
89
10
73
22
10
34
32
1.88
61664814--61664859
23
2.0
23
91
0
74
13
26
26
34
1.92
61670715--61671167
223
2.0
223
99
0
897
36
16
21
25
1.94
61681635--61681702
27
2.5
27
95
0
118
26
26
27
19
1.99
61682513--61682579
28
2.4
27
82
7
89
41
8
1
47
1.44
61682582--61682621
11
3.6
11
86
0
53
87
0
7
5
0.66
61682582--61682611
14
2.1
14
93
0
51
90
0
3
6
0.56
61684789--61684826
18
2.1
18
95
0
67
13
47
5
34
1.65
61684792--61684833
18
2.3
18
87
0
66
19
50
2
28
1.60
61685448--61685565
61
1.9
62
84
10
161
54
11
0
33
1.37
61685571--61685602
3
10.7
3
100
0
64
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61685889--61685984
27
3.6
27
92
0
156
17
31
28
22
1.97
61686023--61686068
8
5.8
8
80
14
51
4
2
6
86
0.75
61686023--61686069
16
2.8
17
87
9
62
4
2
6
87
0.74
61686026--61686069
18
2.4
18
88
7
63
4
2
6
86
0.77
61686071--61686140
28
2.5
29
90
6
110
48
1
10
40
1.45
61694866--61694942
33
2.3
33
97
0
145
46
15
18
19
1.84
61697318--61698169
222
3.8
222
86
3
1184
24
27
16
31
1.96
61697318--61698171
450
1.9
450
94
0
1501
24
27
16
31
1.96
61698939--61698984
20
2.3
20
85
14
60
26
13
28
32
1.93
61698966--61699021
29
1.9
29
81
0
67
14
10
37
37
1.81
61699028--61699080
21
2.5
21
84
0
70
20
3
28
47
1.68
61723619--61723658
21
1.9
21
89
0
62
35
0
2
62
1.09
61723890--61723917
3
9.3
3
100
0
56
32
0
0
67
0.91
61736215--61736255
9
4.4
9
85
14
57
26
2
0
70
0.99
61736222--61736287
11
6.4
11
70
16
52
27
3
1
68
1.13
61736215--61736287
9
7.3
10
75
14
55
28
2
1
67
1.13
61736299--61736370
20
3.7
19
78
14
76
33
0
9
56
1.32
61748011--61748071
31
2.0
31
96
0
113
26
14
9
49
1.75
61748532--61748685
76
2.0
76
92
2
256
31
14
12
40
1.85
61749807--61749947
70
2.0
70
98
0
273
22
21
11
43
1.84
61759410--61759647
50
4.7
50
84
4
291
29
26
15
28
1.96
61759406--61759647
101
2.4
101
84
4
310
29
26
16
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61763616--61763691
23
3.3
23
94
0
134
32
26
19
21
1.97
61767556--61767580
12
2.1
12
100
0
50
20
0
24
56
1.43
61774011--61774080
32
2.2
32
76
16
74
34
0
2
62
1.10
61778074--61778114
21
2.0
21
90
0
64
19
29
21
29
1.98
61785758--61785786
2
14.5
2
100
0
58
48
0
0
51
1.00
61787441--61787487
23
2.0
23
95
0
85
42
4
14
38
1.66
61787834--61787987
76
2.0
76
97
0
290
30
15
12
40
1.85
61790464--61790515
26
2.0
26
96
0
95
28
34
23
13
1.92
61790224--61790593
103
3.6
103
92
2
591
30
30
19
19
1.97
61790922--61790984
29
2.2
29
81
13
76
30
26
6
36
1.81
61790929--61790984
29
1.9
30
85
7
80
30
23
7
39
1.81
61798051--61798100
18
2.8
17
82
8
64
32
10
0
58
1.31
61798091--61798123
12
2.8
12
95
0
57
27
0
6
66
1.15
61799810--61799843
17
2.0
17
100
0
68
29
5
11
52
1.61
61799901--61799948
14
3.4
14
80
11
53
33
0
0
66
0.92
61800206--61800248
21
2.2
21
84
12
56
67
2
25
4
1.22
61801667--61801992
162
2.0
162
96
1
600
34
20
11
32
1.89
61805408--61805445
16
2.4
16
95
0
67
23
2
39
34
1.69
61805681--61805715
18
2.0
17
88
5
52
54
0
0
45
0.99
61805568--61806041
157
3.0
157
97
0
876
44
3
4
47
1.40
61805818--61805859
15
2.7
16
82
14
52
52
2
0
45
1.13
61805827--61805868
15
2.9
15
82
10
52
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61805975--61806016
15
2.7
16
82
14
52
52
2
0
45
1.13
61805984--61806025
15
2.9
15
82
10
52
52
0
0
47
1.00
61805973--61806188
107
2.0
109
96
1
400
49
5
1
43
1.36
61806078--61806123
16
2.9
16
78
12
51
52
2
0
45
1.13
61806078--61806132
15
3.7
15
79
13
53
52
1
0
45
1.11
61806012--61806181
37
4.7
35
67
20
100
48
6
1
43
1.39
61806375--61806797
120
3.5
120
98
0
810
51
4
0
43
1.27
61806552--61806709
26
6.5
26
62
24
83
53
2
0
43
1.19
61806459--61806732
18
15.9
18
64
19
84
53
2
0
42
1.21
61810340--61810386
24
2.0
24
100
0
94
44
38
8
8
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208