genome.fa.s18.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  180  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56715049--56715086	20	1.9	20	89	10	60	31	2	7	57	1.41
56716580--56716823	22	11.2	21	71	11	154	49	29	0	20	1.55
56716761--56716794	15	2.1	16	89	10	52	50	32	0	17	1.47
56716663--56716810	44	3.4	44	90	4	230	51	31	0	17	1.46
56716568--56716824	65	3.9	63	73	14	200	49	30	0	19	1.54
56716886--56717155	114	2.4	115	95	0	479	40	10	8	41	1.70
56720178--56720456	125	2.2	124	89	3	427	30	23	18	27	1.98
56723438--56723490	21	2.5	21	93	0	88	30	39	9	20	1.84
56729599--56729639	20	2.0	20	95	0	73	21	9	12	56	1.65
56730705--56730769	18	3.6	18	76	0	67	24	21	10	43	1.84
56730705--56730768	12	5.3	12	78	0	65	23	21	10	43	1.84
56730717--56730910	12	16.2	12	91	0	127	31	5	14	48	1.67
56730770--56730916	6	24.5	6	94	0	258	34	0	15	50	1.45
56732820--56732913	40	2.3	41	76	7	104	54	1	5	39	1.30
56733119--56733168	19	2.5	21	80	6	59	44	4	10	42	1.56
56734626--56734867	128	1.9	127	82	5	301	25	19	23	31	1.98
56734836--56735102	99	2.7	100	83	3	308	24	22	20	32	1.98
56735102--56735488	132	2.9	132	88	0	578	26	23	19	30	1.98
56735263--56735462	44	4.5	44	71	16	153	27	26	18	28	1.98
56735480--56735880	89	4.5	89	84	0	541	24	23	22	29	1.99
56735480--56735865	44	8.7	44	74	9	268	24	23	23	28	2.00
56737157--56737207	10	5.6	9	73	13	50	1	17	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56737159--56737212	14	3.9	14	77	15	51	5	16	0	77	0.94
56742049--56742142	40	2.3	41	78	7	113	55	1	4	39	1.27
56745833--56746081	50	4.8	50	84	4	275	20	29	23	26	1.99
56745832--56746081	100	2.4	104	86	6	348	20	29	23	26	1.99
56746176--56746207	13	2.5	13	94	0	55	56	12	0	31	1.37
56746419--56746475	30	1.9	30	89	3	89	29	24	3	42	1.71
56748558--56748697	70	2.0	70	97	0	262	35	13	29	22	1.92
56751977--56752302	105	3.1	105	88	0	366	28	26	14	31	1.95
56755629--56755745	43	2.7	43	79	6	130	23	12	25	37	1.91
56758006--56758215	28	7.5	28	96	0	368	25	11	29	33	1.91
56757981--56758215	84	2.8	84	92	1	373	25	11	28	34	1.91
56757981--56758215	56	4.2	56	92	1	364	25	11	28	34	1.91
56766391--56766600	28	7.5	28	96	0	368	25	11	29	33	1.91
56766366--56766600	84	2.8	84	92	1	373	25	11	28	34	1.91
56766366--56766600	56	4.2	56	92	1	364	25	11	28	34	1.91
56773488--56773519	15	2.2	15	94	5	57	71	0	0	28	0.86
56776813--56776837	3	8.3	3	100	0	50	32	0	0	68	0.90
56782851--56782942	46	2.0	46	91	4	152	27	4	29	39	1.76
56782851--56782958	46	2.5	44	84	11	136	29	3	29	37	1.75
56783092--56783255	17	11.0	15	67	27	68	54	2	1	40	1.24
56783092--56783138	17	2.9	17	90	6	71	57	0	0	42	0.98
56783172--56783210	20	1.9	21	84	5	53	61	5	2	30	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56783086--56783573	117	4.3	117	92	4	777	51	3	2	42	1.31
56783338--56783371	17	2.0	17	100	0	68	58	0	0	41	0.98
56783533--56783596	32	2.0	32	81	0	74	48	3	0	48	1.17
56785501--56785525	10	2.5	10	100	0	50	44	28	8	20	1.79
56785662--56785712	26	2.0	26	96	0	93	47	23	11	17	1.81
56786651--56786696	23	2.0	23	83	8	58	52	2	8	36	1.45
56790671--56790721	16	3.3	16	71	20	54	50	11	9	27	1.70
56794598--56794633	3	12.0	3	87	0	54	0	5	33	61	1.19
56795085--56795128	12	3.7	12	84	0	61	11	9	40	38	1.73
56797364--56797472	44	2.6	41	74	17	98	44	0	4	50	1.29
56797310--56797569	117	2.3	112	86	10	354	43	1	3	51	1.28
56797397--56797460	28	2.4	28	86	5	87	43	0	0	56	0.99
56797516--56797549	17	2.0	17	100	0	68	41	0	0	58	0.98
56797516--56797563	15	3.0	15	81	9	51	41	2	0	56	1.11
56797698--56797841	44	3.4	42	89	7	186	37	29	4	28	1.76
56797713--56797848	44	3.0	44	95	2	236	38	30	4	26	1.76
56800379--56800620	105	2.3	105	91	0	403	28	28	14	29	1.95
56805394--56805781	114	3.4	114	78	3	440	35	16	20	28	1.94
56805394--56805841	114	3.9	112	76	7	404	34	16	20	27	1.95
56805399--56805841	227	2.0	227	89	2	676	34	16	20	27	1.95
56808748--56808793	23	2.0	23	83	8	58	17	4	17	60	1.51
56808903--56808990	44	2.0	46	88	4	135	22	5	27	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56810224--56810256	17	1.9	17	100	0	66	36	6	6	51	1.51
56810490--56810595	32	3.4	30	76	15	101	53	13	0	32	1.46
56810526--56810595	20	3.5	21	77	11	67	55	12	0	31	1.38
56810490--56810595	29	3.4	29	79	15	115	53	13	0	32	1.46
56810507--56810605	29	3.3	28	81	14	101	55	12	1	31	1.43
56810617--56810890	9	30.2	9	75	7	232	50	15	3	30	1.60
56810617--56810897	27	10.1	27	78	11	264	50	15	3	30	1.60
56810639--56810890	91	2.8	90	83	5	303	49	16	3	30	1.61
56811490--56811708	45	4.9	45	91	0	321	39	15	19	25	1.91
56815200--56815231	16	2.0	16	93	0	55	15	12	21	50	1.77
56815345--56815563	45	4.9	45	90	0	303	40	15	19	24	1.90
56821510--56821680	66	2.6	65	84	4	200	39	18	27	14	1.89
56821652--56821763	21	5.3	21	76	8	59	39	17	39	3	1.67
56821663--56821763	42	2.4	42	83	3	114	40	17	38	2	1.65
56822156--56822277	43	2.8	43	80	7	140	37	23	18	20	1.94
56822426--56822468	22	2.0	22	90	0	68	44	27	18	9	1.80
56826067--56826091	6	4.2	6	100	0	50	48	0	0	52	1.00
56827106--56827148	11	3.9	11	82	8	52	76	2	18	2	1.00
56830556--56830591	17	2.0	19	89	10	58	33	30	0	36	1.58
56838162--56838191	15	2.1	15	93	6	53	50	0	0	50	1.00
56839960--56839997	7	5.4	7	96	0	58	13	21	0	65	1.26
56840024--56840076	27	1.9	28	85	11	74	39	11	9	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56840989--56841021	11	2.8	12	86	9	50	45	0	0	54	0.99
56842623--56842652	14	2.1	14	93	0	51	23	0	0	76	0.78
56852047--56852161	57	2.1	57	91	4	191	51	3	22	22	1.63
56852138--56852185	24	2.0	24	95	0	87	50	2	12	35	1.52
56852274--56852314	3	13.7	3	100	0	82	65	0	0	34	0.93
56852687--56852733	19	2.5	19	86	6	60	70	4	14	10	1.31
56861950--56861996	3	15.7	3	100	0	94	34	34	0	31	1.58
56862580--56862615	10	3.8	10	85	14	58	72	0	0	27	0.85
56865343--56865367	13	1.9	13	100	0	50	36	0	8	56	1.29
56866335--56866416	39	2.1	38	88	8	121	50	2	0	47	1.14
56867384--56867560	89	2.0	88	93	1	300	30	14	19	35	1.92
56868664--56868715	27	1.9	27	100	0	104	15	25	32	26	1.95
56868665--56868892	102	2.2	102	94	1	395	19	20	29	30	1.97
56868792--56869002	75	2.8	75	89	1	307	23	19	26	30	1.98
56872581--56872610	15	2.1	15	93	6	53	50	0	0	50	1.00
56882103--56882273	84	2.0	85	97	1	326	32	8	18	40	1.81
56883002--56883104	9	11.4	9	85	4	127	24	7	25	42	1.81
56884315--56884418	41	2.5	41	93	0	172	22	29	21	26	1.99
56892018--56892163	41	3.6	41	83	2	170	23	27	20	28	1.99
56896834--56896880	19	2.5	19	86	6	60	25	21	10	42	1.85
56899355--56899404	3	16.7	3	100	0	100	68	0	32	0	0.90
56900677--56900770	43	2.2	43	84	5	118	26	17	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56900883--56901293	45	9.2	45	86	2	486	28	18	24	27	1.98
56901453--56901621	44	3.8	44	80	0	167	29	17	22	30	1.96
56901453--56901581	45	2.9	45	84	1	161	30	19	21	28	1.98
56902489--56902527	3	13.0	3	83	0	51	30	0	2	66	1.05
56902640--56902677	19	2.0	19	89	0	58	42	5	0	52	1.24
56902807--56902865	16	3.6	16	77	4	64	37	10	1	50	1.46
56904057--56904190	72	1.9	72	84	9	184	35	15	18	29	1.92
56904741--56904811	35	2.0	35	86	5	99	54	4	11	29	1.54
56904886--56904947	16	3.8	16	80	4	79	53	1	8	37	1.40
56905243--56905267	3	8.3	3	100	0	50	68	0	0	32	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208