genome.fa.s18.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  201  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62181970--62182348	181	2.1	175	85	7	498	21	18	21	37	1.94
62184122--62184162	18	2.3	18	87	4	57	56	4	7	31	1.48
62184670--62184700	5	6.0	5	96	3	53	77	0	0	22	0.77
62194843--62194906	26	2.3	26	84	12	76	64	0	0	35	0.94
62194827--62194906	29	2.8	28	75	19	85	62	0	1	36	1.03
62198458--62198505	22	2.1	23	81	18	64	35	0	4	60	1.16
62198464--62198505	22	1.9	22	90	9	68	35	0	4	59	1.19
62198905--62198952	21	2.2	22	77	3	53	52	8	2	37	1.44
62208092--62208144	25	2.1	25	100	0	106	37	11	15	35	1.83
62208920--62208955	18	2.0	18	100	0	72	27	5	5	61	1.41
62209037--62209115	36	2.2	37	97	2	151	56	5	8	29	1.51
62209305--62209362	25	2.3	25	81	0	71	63	1	3	31	1.21
62209709--62209742	7	4.9	7	92	0	50	0	20	0	79	0.73
62212207--62212461	52	5.1	51	85	11	341	35	13	22	28	1.92
62212193--62212461	98	2.7	98	93	0	439	34	13	22	28	1.92
62212259--62212498	46	5.3	46	85	10	282	36	14	21	27	1.92
62212425--62212570	37	4.0	37	90	1	224	36	17	22	23	1.95
62213825--62213968	49	2.9	49	89	1	207	23	14	29	31	1.94
62217094--62217362	46	5.6	49	87	10	346	34	13	22	29	1.92
62217094--62217362	98	2.7	98	94	0	448	34	13	22	29	1.92
62217160--62217399	46	5.3	46	86	10	291	36	13	21	28	1.92
62217326--62217471	37	4.0	37	91	1	233	36	16	22	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62218449--62218524	9	8.4	9	83	0	98	25	10	23	40	1.86
62218449--62218516	18	3.8	18	94	0	118	23	11	25	39	1.88
62218890--62219011	43	3.0	39	74	15	131	37	4	2	54	1.35
62228640--62228720	40	2.0	40	100	0	162	28	9	7	54	1.60
62230382--62230413	17	1.9	16	93	6	55	37	6	3	53	1.42
62232346--62232409	23	2.8	23	85	4	85	42	10	12	34	1.78
62235275--62235309	6	5.8	6	93	0	61	34	0	17	48	1.47
62236037--62236100	32	2.0	31	96	3	119	17	31	12	39	1.87
62236041--62236116	32	2.4	31	89	6	109	18	25	11	44	1.83
62236155--62236311	52	3.0	50	80	10	149	40	10	14	34	1.80
62236169--62236310	51	2.8	51	86	5	180	40	10	16	33	1.82
62237638--62237668	3	10.3	3	100	0	62	35	0	0	64	0.94
62242673--62242754	35	2.4	35	86	8	107	51	4	0	43	1.23
62242669--62242751	24	3.6	22	74	18	71	49	4	0	45	1.23
62244989--62245143	25	5.9	26	69	14	93	32	5	6	55	1.48
62245227--62245275	22	2.3	22	85	3	64	28	4	4	63	1.31
62245184--62245344	26	6.3	26	73	15	113	27	7	6	59	1.49
62250643--62250788	30	4.9	30	77	9	131	36	2	0	60	1.11
62250667--62250788	30	4.1	29	83	7	156	37	2	0	59	1.11
62250637--62250788	60	2.5	59	87	7	209	36	3	0	60	1.13
62250637--62250723	40	2.1	41	80	16	101	33	4	0	62	1.16
62250637--62250723	20	4.3	20	73	21	83	33	4	0	62	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62250649--62250773	10	12.3	11	67	23	60	35	3	0	61	1.12
62252541--62252588	24	2.0	23	84	4	60	72	2	10	14	1.19
62255518--62255595	23	3.5	23	84	8	90	43	12	11	32	1.79
62259738--62259814	29	2.5	31	85	4	104	25	14	12	46	1.80
62260650--62260768	60	2.0	60	93	0	202	32	0	12	54	1.38
62260873--62260950	19	4.3	19	67	26	60	38	0	8	52	1.33
62260858--62261019	60	2.8	59	85	7	217	36	0	10	53	1.36
62267575--62267621	24	2.0	23	83	4	58	72	2	10	14	1.21
62269860--62269968	35	3.1	34	82	12	130	44	10	8	36	1.68
62269857--62269991	19	7.2	19	75	16	122	42	10	8	38	1.69
62269901--62270013	55	2.1	55	83	6	140	43	11	7	37	1.70
62270684--62270736	24	2.2	24	93	0	88	24	5	5	64	1.38
62272058--62272127	36	1.9	36	88	0	104	28	4	31	35	1.77
62273529--62273620	29	3.1	29	68	3	94	25	39	0	35	1.56
62273548--62273661	30	3.8	30	75	2	131	21	40	0	37	1.54
62273529--62273650	59	2.1	59	100	0	244	23	40	0	36	1.55
62273908--62273969	17	3.5	17	75	18	54	22	30	0	46	1.52
62275138--62275272	43	3.2	42	83	6	148	26	17	26	29	1.97
62275170--62275409	43	5.9	43	72	12	184	25	18	27	27	1.98
62275223--62275362	74	1.9	74	92	0	235	25	18	29	26	1.98
62275193--62275411	117	1.9	117	84	3	298	24	18	28	28	1.98
62275514--62275572	23	2.6	23	83	5	75	40	10	13	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62277776--62277807	3	10.7	3	100	0	64	68	0	0	31	0.90
62280217--62280260	23	1.9	23	85	0	61	43	15	15	25	1.87
62282034--62282071	2	19.0	2	100	0	76	50	50	0	0	1.00
62286539--62286575	17	2.2	17	100	0	74	70	13	0	16	1.17
62296575--62296731	31	4.9	31	67	15	88	34	13	14	37	1.85
62302311--62302352	21	2.0	21	85	0	57	33	16	7	42	1.75
62302486--62302523	19	2.0	19	100	0	76	31	10	26	31	1.90
62310262--62310296	16	2.2	16	89	0	52	42	14	14	28	1.84
62315970--62316000	16	1.9	16	93	0	53	35	9	9	45	1.70
62316076--62316172	49	2.0	49	91	4	160	35	21	9	34	1.86
62322148--62322176	14	2.1	14	100	0	58	31	0	34	34	1.58
62326877--62326919	22	2.0	22	90	0	68	25	11	27	34	1.91
62326801--62326962	82	2.0	82	88	2	245	34	14	20	30	1.93
62328456--62328585	63	2.1	63	98	0	251	23	40	11	24	1.87
62329092--62329118	5	5.4	5	100	0	54	37	0	0	62	0.95
62330498--62330532	4	8.8	4	93	0	61	51	20	0	28	1.47
62330502--62330535	16	2.1	16	100	0	68	50	17	0	32	1.47
62330770--62330828	29	2.0	30	86	3	84	22	23	15	38	1.92
62333887--62333952	33	2.0	33	84	0	87	36	12	6	45	1.66
62334741--62334784	18	2.4	20	75	21	51	29	0	4	65	1.12
62339645--62340602	155	6.0	162	84	5	1265	22	16	21	39	1.92
62346502--62346628	61	2.1	61	81	0	146	47	13	4	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62351115--62351257	68	2.1	68	84	2	180	30	11	21	36	1.89
62351604--62351634	2	15.0	2	93	6	53	48	3	0	48	1.17
62351603--62351632	15	2.0	15	100	0	60	46	6	0	46	1.29
62352182--62352660	233	2.0	236	92	3	793	44	10	13	31	1.77
62352936--62352975	14	2.9	14	92	0	62	42	5	0	52	1.23
62356434--62356490	29	2.0	29	82	6	71	42	10	19	28	1.84
62357473--62357595	61	2.0	61	80	3	140	42	13	5	39	1.67
62359128--62359308	84	2.2	84	94	3	314	35	18	10	34	1.86
62359806--62359839	17	2.0	17	94	0	59	44	50	0	5	1.26
62364445--62364478	17	2.0	17	94	0	59	44	50	0	5	1.26
62367060--62367181	56	2.3	52	80	10	133	30	10	19	39	1.86
62367708--62367748	20	2.0	20	90	0	64	53	0	2	43	1.13
62374782--62374916	61	2.2	61	82	2	155	45	11	5	37	1.63
62379356--62379616	86	3.0	87	82	3	249	34	19	8	37	1.81
62379423--62379616	86	2.2	87	87	6	295	35	19	9	35	1.84
62379643--62379687	20	2.3	20	84	3	65	64	0	2	33	1.06
62379717--62379772	28	2.0	28	83	10	71	64	3	3	28	1.27
62379894--62380067	92	1.9	92	92	2	298	29	11	22	36	1.89
62380403--62380474	27	2.4	30	76	13	78	34	0	4	61	1.16
62382068--62382156	9	9.2	10	68	16	53	38	3	0	58	1.15
62382030--62382145	28	4.1	27	71	12	74	32	6	1	59	1.32
62382221--62382443	89	2.5	89	81	5	232	30	6	23	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62383688--62383765	13	6.0	13	74	4	59	83	1	10	5	0.86
62383689--62383757	22	3.0	22	82	8	84	84	1	11	2	0.81
62383687--62383760	23	3.3	21	77	15	76	83	1	12	2	0.81
62397455--62397653	91	2.2	87	85	7	283	35	19	9	36	1.84
62397680--62397724	20	2.3	20	84	3	65	64	0	2	33	1.06
62397774--62397801	10	2.8	10	100	0	56	64	0	0	35	0.94
62398062--62398141	9	8.4	10	79	10	71	40	1	0	58	1.06
62398097--62398147	9	5.4	9	88	9	75	41	0	0	58	0.98
62398216--62398389	92	1.9	92	90	2	280	28	10	22	37	1.88
62403346--62403494	72	2.1	72	93	0	253	29	24	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208