genome.fa.s18.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  106  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35277192--35277259	21	3.3	21	87	2	93	38	19	39	2	1.67
35277244--35277283	12	3.3	12	89	0	53	40	17	37	5	1.72
35277717--35277840	42	2.9	43	83	8	155	25	24	19	30	1.98
35280776--35280956	53	3.7	53	73	21	203	49	7	3	39	1.49
35280790--35280973	93	2.0	93	95	0	332	48	6	5	39	1.52
35281414--35281455	23	1.9	23	85	9	61	33	4	0	61	1.17
35281716--35281852	42	3.2	41	83	9	161	27	19	27	24	1.99
35282299--35282366	21	3.2	21	85	0	91	1	41	20	36	1.62
35287848--35287916	16	4.1	16	85	5	84	31	0	20	47	1.50
35287838--35287901	9	7.6	9	78	18	75	31	0	23	45	1.53
35287975--35288069	9	10.6	9	75	17	90	33	1	17	47	1.55
35287975--35288069	16	5.3	18	76	15	90	33	1	17	47	1.55
35287953--35288101	22	7.1	21	71	21	107	34	2	16	46	1.61
35287970--35288097	38	3.2	38	83	10	159	34	0	16	48	1.52
35288906--35288936	16	1.9	16	100	0	62	51	6	3	38	1.44
35289402--35289459	26	2.2	26	93	0	98	39	3	17	39	1.66
35290555--35290588	13	2.6	13	80	0	50	29	0	47	23	1.52
35291339--35291379	19	2.1	20	82	13	50	46	0	4	48	1.23
35292102--35292214	7	15.3	7	76	10	109	30	48	0	20	1.50
35292101--35292219	54	2.3	51	84	7	150	32	46	0	21	1.51
35297006--35297091	42	2.0	44	91	8	142	53	1	12	32	1.46
35302255--35302328	39	2.0	36	86	7	103	43	12	9	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35310871--35311065	50	3.9	50	87	0	273	27	22	30	20	1.98
35310822--35311065	100	2.4	103	82	4	305	27	21	29	21	1.99
35321372--35321422	21	2.4	21	86	0	66	43	7	17	31	1.78
35333015--35333122	40	2.7	40	79	2	119	20	23	18	37	1.94
35338604--35338652	17	2.9	16	77	22	55	4	0	12	83	0.77
35338874--35338911	13	3.0	13	88	3	60	65	0	0	34	0.93
35339517--35339617	35	2.9	35	82	8	125	37	16	22	22	1.94
35341754--35341796	16	2.7	16	100	0	86	46	13	23	16	1.83
35343058--35343113	20	2.8	20	78	10	62	51	3	0	44	1.18
35343058--35343100	19	2.2	20	87	4	61	55	2	0	41	1.12
35343336--35343393	21	2.8	21	89	0	89	25	31	10	32	1.89
35344278--35344322	20	2.2	20	92	0	72	13	20	8	57	1.62
35349779--35349809	13	2.4	13	94	0	53	25	22	32	19	1.97
35353395--35353443	21	2.3	21	79	6	55	24	28	18	28	1.98
35355125--35355163	10	4.1	9	87	9	51	61	5	0	33	1.18
35355127--35355163	19	1.9	20	88	5	58	59	5	0	35	1.20
35355675--35355723	22	2.2	23	79	17	59	30	2	4	63	1.24
35355683--35355736	10	5.2	10	76	8	54	38	0	3	57	1.17
35355692--35355741	22	2.3	22	79	6	57	40	0	4	56	1.18
35355722--35355785	35	1.9	32	84	12	85	50	1	3	45	1.27
35355763--35355827	19	3.3	20	79	16	73	56	4	1	36	1.29
35361270--35361354	9	9.4	9	86	0	116	42	24	9	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35361457--35361510	18	2.9	18	86	2	72	16	1	40	40	1.59
35369215--35369260	22	2.2	20	88	7	65	17	2	0	80	0.81
35370237--35370292	20	2.8	20	73	13	60	35	14	3	46	1.62
35375339--35375393	9	6.0	9	85	10	76	85	0	14	0	0.60
35375339--35375392	13	4.1	13	79	13	65	87	0	12	0	0.56
35376765--35376963	51	4.0	50	77	8	188	31	26	21	20	1.98
35376765--35376963	100	2.0	100	89	3	303	31	26	21	20	1.98
35376980--35377349	50	7.4	49	72	6	242	31	22	21	24	1.98
35376804--35377135	172	1.9	172	85	2	452	29	25	21	23	1.99
35376979--35377349	100	3.7	100	84	3	426	31	22	21	24	1.98
35377361--35377741	44	8.8	44	66	9	140	30	21	22	25	1.99
35377358--35377766	217	1.9	217	89	2	633	30	21	22	26	1.99
35378574--35378600	5	5.4	5	100	0	54	18	0	0	81	0.69
35379572--35379627	20	2.8	20	78	13	69	37	14	1	46	1.55
35381341--35381372	3	10.7	3	100	0	64	34	0	0	65	0.93
35382768--35382904	35	3.9	35	81	1	150	44	18	16	20	1.87
35382768--35382904	69	2.0	70	79	1	150	44	18	16	20	1.87
35384193--35384232	13	3.2	13	92	7	73	15	70	0	15	1.18
35384193--35384232	6	6.3	6	91	8	62	15	70	0	15	1.18
35390044--35390116	30	2.4	30	82	10	87	41	9	5	43	1.60
35392976--35393043	35	1.9	36	87	3	102	45	8	5	39	1.60
35393015--35393305	35	8.3	35	78	7	225	46	9	13	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35393014--35393304	53	5.5	53	78	8	229	46	9	13	29	1.76
35393015--35393304	18	16.5	17	75	13	189	46	10	13	29	1.76
35393031--35393304	123	2.2	123	87	4	394	45	9	14	29	1.77
35393839--35393902	26	2.4	25	84	7	74	0	15	3	81	0.82
35393831--35393898	34	2.0	34	83	11	86	0	17	4	77	0.92
35393922--35394018	43	2.2	43	85	1	122	10	20	44	24	1.83
35394152--35394208	18	3.2	17	80	11	60	1	15	0	82	0.75
35394154--35394211	28	2.1	28	90	6	91	1	17	0	81	0.78
35394153--35394211	11	5.2	11	78	13	57	1	16	0	81	0.78
35394319--35394356	20	1.9	21	89	10	62	0	34	0	65	0.93
35394309--35394356	21	2.3	20	83	13	62	0	35	0	64	0.94
35394514--35394556	22	1.9	23	90	4	70	9	9	13	67	1.42
35394809--35394911	30	3.4	30	74	12	88	42	3	20	33	1.70
35395285--35395449	90	1.8	90	85	0	231	30	16	14	38	1.89
35395446--35395616	88	1.9	89	90	3	274	30	21	13	35	1.91
35395537--35397972	79	31.4	77	84	8	2550	36	20	15	27	1.94
35395453--35395638	88	2.1	88	79	5	196	36	19	13	30	1.90
35395559--35397972	159	15.5	158	85	6	2762	35	20	15	27	1.94
35397767--35397900	66	2.0	66	95	0	241	38	19	13	29	1.90
35397689--35397972	144	2.0	143	89	2	435	37	19	15	27	1.92
35398817--35398887	18	3.8	18	76	16	65	4	5	7	83	0.92
35398810--35398861	18	2.7	20	82	14	65	3	7	5	82	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35398817--35398861	20	2.3	20	88	7	67	2	6	6	84	0.85
35398816--35398889	30	2.5	28	85	10	103	4	5	6	83	0.89
35398819--35398889	8	7.9	8	72	20	52	4	5	7	83	0.92
35398816--35398890	20	3.8	20	73	13	57	4	5	6	84	0.88
35405551--35405618	35	1.9	36	87	3	102	44	8	7	39	1.64
35405589--35405879	18	16.6	17	73	15	213	45	9	14	30	1.77
35405588--35405878	52	5.5	53	79	7	229	45	9	14	30	1.77
35405590--35405884	35	8.4	35	75	11	212	45	9	14	30	1.77
35405911--35405965	17	3.2	17	71	0	56	40	7	7	45	1.60
35406416--35406461	7	6.7	7	76	14	51	0	19	0	80	0.71
35406418--35406476	26	2.2	27	88	8	86	0	20	0	79	0.73
35406415--35406477	27	2.3	28	84	13	87	0	22	0	77	0.76
35406494--35406589	43	2.3	43	88	1	140	10	22	44	21	1.83
35406518--35406611	43	2.2	42	81	7	100	11	24	42	21	1.86
35406730--35406805	22	3.4	21	78	10	71	5	14	1	78	0.98
35406736--35406806	6	12.0	6	71	18	51	4	15	1	78	0.97
35406752--35406802	13	4.2	13	76	16	56	3	15	1	78	0.99
35406917--35406954	20	1.9	21	89	10	62	0	34	0	65	0.93
35406907--35406954	21	2.3	20	83	13	62	0	35	0	64	0.94
35407394--35407531	30	4.6	30	73	6	100	42	4	21	31	1.73
35411488--35411522	3	11.7	3	100	0	70	68	0	0	31	0.90
35414200--35414225	12	2.2	12	100	0	52	15	34	7	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35418289--35418924	106	6.0	106	90	1	1004	33	18	17	30	1.94
35421004--35421310	132	2.3	130	88	1	443	27	26	17	28	1.98
35421129--35421398	87	3.1	87	68	8	260	29	25	18	26	1.98
35421100--35421480	174	2.2	175	91	2	631	28	26	17	27	1.98
35421144--35421436	87	3.4	87	69	5	259	26	26	19	27	1.99
35421004--35421615	305	2.0	307	88	1	926	27	25	17	28	1.98
35421285--35421743	131	3.5	131	85	2	611	28	24	18	28	1.98
35421100--35421746	44	14.8	44	67	10	234	28	25	17	28	1.98
35422238--35422428	97	2.0	97	88	2	285	47	8	15	27	1.75
35422260--35422420	49	3.3	47	66	17	116	45	9	16	28	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208