genome.fa.s18.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  166  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53557091--53557168	25	3.2	25	63	17	65	29	26	7	35	1.84
53557185--53557262	25	3.2	25	63	23	67	29	34	7	28	1.85
53562125--53562182	7	7.9	7	83	9	71	1	17	1	79	0.90
53562117--53562184	7	8.9	8	77	8	54	1	16	2	79	0.93
53562119--53562164	14	3.3	14	90	6	67	0	13	4	82	0.81
53562115--53562182	21	3.0	22	82	10	75	1	17	2	77	0.96
53562115--53562174	7	7.9	8	81	10	56	0	18	3	78	0.89
53562373--53562411	12	3.3	12	82	3	53	0	25	0	74	0.82
53562369--53562412	19	2.4	18	80	3	52	0	25	0	75	0.81
53566790--53566868	39	2.0	39	97	0	149	32	18	10	37	1.85
53568918--53568978	29	2.1	29	87	6	88	37	31	21	9	1.86
53570140--53570279	71	1.9	72	82	2	174	24	20	27	28	1.99
53572264--53572305	22	1.9	22	90	9	68	21	35	0	42	1.53
53582287--53582369	42	2.0	43	87	2	123	34	21	20	22	1.96
53598697--53598721	10	2.5	10	100	0	50	36	0	0	64	0.94
53598744--53598802	30	1.9	30	83	10	75	49	13	0	37	1.43
53602864--53602908	18	2.5	17	79	10	54	57	2	2	37	1.23
53608286--53608319	16	2.2	16	94	5	61	47	14	11	26	1.79
53608252--53608405	75	2.1	75	96	0	281	45	6	17	30	1.74
53612472--53612763	147	2.0	146	95	0	521	39	10	10	39	1.74
53613935--53613961	14	1.9	14	100	0	54	22	7	11	59	1.56
53617693--53617787	14	6.8	14	67	7	50	45	17	1	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53617737--53617821	28	3.0	28	76	6	100	45	21	0	32	1.52
53617707--53617821	56	2.1	56	89	0	176	44	18	0	36	1.56
53617835--53617874	20	2.1	19	85	4	53	75	5	5	15	1.15
53618491--53618536	24	1.9	24	81	0	56	63	4	0	32	1.14
53618767--53618823	3	19.0	3	100	0	114	66	0	0	33	0.92
53619882--53620208	76	4.3	76	82	3	349	38	21	12	27	1.90
53620844--53621189	182	1.9	182	100	0	692	30	20	14	35	1.92
53623816--53623861	24	1.9	24	81	0	56	63	4	0	32	1.14
53624098--53624139	3	14.0	3	94	0	75	66	2	0	30	1.04
53625046--53625208	76	2.2	75	79	1	173	40	13	16	29	1.87
53625249--53625592	76	4.6	76	76	6	299	38	19	11	29	1.88
53625249--53625592	152	2.3	152	79	6	351	38	19	11	29	1.88
53646789--53646831	19	2.1	21	84	16	56	27	0	2	69	1.00
53646849--53646914	20	3.4	20	78	17	77	34	1	7	56	1.37
53647334--53647374	17	2.3	18	88	12	59	60	0	2	36	1.10
53648570--53648623	21	2.6	21	85	8	67	20	35	1	42	1.63
53660623--53660734	43	2.6	43	81	13	140	22	20	29	27	1.98
53670494--53670534	21	2.0	21	90	0	64	39	0	4	56	1.21
53670814--53670838	13	1.9	13	100	0	50	32	24	12	32	1.91
53675865--53675900	18	2.0	18	88	0	54	30	2	16	50	1.60
53676662--53676711	23	2.2	23	92	0	82	24	26	16	34	1.95
53681186--53681237	23	2.3	23	96	0	95	42	7	3	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53685688--53685732	18	2.5	18	82	7	56	40	17	4	37	1.70
53689879--53689972	34	2.7	34	88	3	134	44	12	11	30	1.78
53698952--53699035	29	2.9	29	89	0	123	21	11	23	42	1.86
53699145--53699281	28	4.9	28	78	1	112	18	18	21	42	1.89
53702625--53702672	16	3.2	15	88	5	71	70	0	2	27	0.98
53702647--53702672	13	2.0	13	100	0	52	69	0	0	30	0.89
53702625--53702672	3	16.0	3	79	16	55	70	0	2	27	0.98
53706182--53706225	18	2.3	19	76	7	54	38	2	2	56	1.24
53710173--53710402	95	2.4	96	83	5	295	38	3	19	39	1.67
53710435--53710974	125	4.3	126	88	1	753	33	18	20	27	1.96
53719006--53719673	126	5.3	126	90	0	967	27	21	17	33	1.96
53721004--53721143	59	2.5	52	73	17	127	35	17	22	25	1.95
53721119--53721718	46	12.4	48	68	12	208	32	20	21	25	1.97
53721488--53721612	49	2.6	49	83	2	146	32	21	20	25	1.98
53721487--53721718	95	2.4	96	75	5	238	31	19	21	26	1.97
53724836--53724871	13	2.7	14	87	12	58	30	5	0	63	1.17
53724836--53724877	13	3.1	14	83	10	52	28	4	0	66	1.12
53727805--53727835	7	4.4	7	95	0	53	12	3	35	48	1.58
53727862--53728270	126	3.3	125	88	3	608	28	16	24	31	1.96
53731398--53732049	43	15.3	43	81	11	736	26	0	28	45	1.55
53731726--53731815	20	4.9	16	82	14	56	25	0	30	44	1.54
53731689--53731834	40	4.1	32	74	22	84	24	0	28	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53731839--53731876	15	2.5	15	91	0	58	28	0	26	44	1.54
53731946--53732028	22	3.5	24	80	18	70	27	0	26	45	1.54
53731983--53732029	14	3.4	14	72	16	53	25	0	29	44	1.54
53731970--53732039	27	2.6	27	86	6	88	25	0	30	44	1.55
53731398--53732011	21	29.1	21	81	9	682	26	0	28	45	1.55
53731970--53732049	27	3.1	27	67	26	75	27	0	27	45	1.54
53732063--53732091	8	3.8	8	95	4	51	51	0	0	48	1.00
53733268--53733293	7	3.7	7	100	0	52	57	15	0	26	1.38
53733463--53733500	20	1.9	20	84	10	51	55	7	2	34	1.43
53733769--53733835	31	2.2	31	88	0	98	34	17	17	29	1.94
53734377--53734416	7	5.7	7	100	0	80	27	0	15	57	1.38
53735359--53735407	21	2.3	21	79	6	55	32	34	28	4	1.76
53735594--53735622	8	3.8	8	90	9	51	48	0	0	51	1.00
53741191--53741231	3	13.3	3	84	5	55	68	2	0	29	1.03
53742742--53742866	61	2.0	61	100	0	250	20	6	15	57	1.60
53743383--53743507	52	2.4	52	77	5	119	44	11	12	31	1.78
53743475--53743556	19	4.5	18	79	7	85	43	10	14	30	1.80
53743383--53743556	17	9.8	17	72	14	95	43	10	14	31	1.80
53743400--53743563	18	9.2	17	72	9	78	42	10	13	34	1.78
53744110--53744173	5	13.4	5	76	15	64	0	18	1	79	0.81
53744111--53744173	8	7.8	8	80	7	65	0	17	1	80	0.78
53744116--53744171	14	4.1	13	80	13	67	0	16	1	82	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53744477--53744549	7	10.3	7	80	7	76	2	15	1	80	0.89
53744477--53744554	21	3.6	21	81	8	86	2	16	1	79	0.91
53744475--53744549	28	2.6	28	79	6	89	2	14	1	81	0.87
53744647--53744699	7	8.0	7	75	12	58	0	28	0	71	0.86
53744647--53744719	24	3.3	23	76	21	75	0	24	0	75	0.81
53744650--53744735	9	9.2	9	70	23	54	0	25	0	74	0.82
53744657--53744713	22	2.8	20	82	14	73	0	22	0	77	0.77
53744636--53744735	25	3.8	26	76	12	82	0	29	0	71	0.87
53744662--53744726	32	2.0	33	85	8	89	0	26	0	73	0.83
53745269--53745336	31	2.2	31	81	2	84	47	5	16	30	1.70
53745720--53746179	78	6.0	77	84	5	540	35	20	16	27	1.94
53745678--53746159	148	3.2	148	86	5	486	34	22	16	25	1.95
53747063--53747128	27	2.5	26	87	4	89	6	4	10	78	1.06
53747093--53747134	6	6.8	6	84	15	59	0	2	14	83	0.75
53758037--53758160	52	2.4	51	82	8	144	45	10	13	30	1.77
53758037--53758214	17	10.2	17	75	11	139	43	11	12	32	1.78
53758146--53758227	17	4.5	18	75	10	78	42	13	9	34	1.77
53758037--53758227	35	5.4	34	73	10	152	44	11	12	31	1.77
53758257--53758302	17	2.6	19	80	16	62	41	10	15	32	1.82
53758768--53758826	20	2.7	22	80	12	68	0	20	1	77	0.85
53758776--53758826	16	3.1	16	72	16	50	0	23	0	76	0.79
53759147--53759212	8	8.2	8	73	17	57	3	13	1	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53759156--53759182	14	1.9	14	100	0	54	3	14	0	81	0.82
53759148--53759218	15	4.5	15	74	19	56	2	15	1	80	0.90
53759175--53759230	12	4.5	13	80	8	64	1	19	1	76	0.96
53759147--53759227	25	3.4	23	81	8	83	2	17	1	79	0.92
53759309--53759388	25	3.3	23	75	16	72	2	33	0	63	1.08
53759311--53759389	23	3.2	25	71	23	67	2	32	0	64	1.07
53759981--53760074	30	3.2	29	81	11	104	43	4	18	34	1.69
53760066--53760098	16	2.1	16	100	0	66	24	0	6	69	1.10
53762323--53762353	3	10.3	3	100	0	62	67	0	0	32	0.91
53769818--53769874	25	2.3	24	84	6	69	33	7	3	56	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208