genome.fa.s18.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  176  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55865412--55865713	128	2.4	128	100	0	604	18	30	22	28	1.97
55865412--55865714	64	4.7	64	94	0	534	18	30	22	28	1.97
55866436--55866460	10	2.5	10	100	0	50	92	0	8	0	0.40
55870151--55870250	49	2.0	49	100	0	200	51	8	17	24	1.72
55874215--55874265	21	2.4	21	93	0	84	47	7	17	27	1.75
55875643--55875693	14	3.8	14	78	14	54	19	0	3	76	0.94
55876476--55876674	109	1.8	110	89	3	312	29	16	23	30	1.96
55877714--55877752	6	6.3	6	86	13	53	82	0	17	0	0.68
55877714--55877752	13	3.2	12	89	10	53	82	0	17	0	0.68
55878128--55878339	64	3.3	63	84	1	280	29	27	19	24	1.98
55880531--55880562	14	2.3	14	94	0	55	34	0	3	62	1.11
55880534--55880566	17	1.9	17	93	0	57	36	0	3	60	1.12
55881033--55881074	21	2.0	21	90	0	66	52	0	19	28	1.46
55881344--55881380	3	12.3	3	100	0	74	35	0	0	64	0.94
55889980--55890032	23	2.4	22	76	20	56	9	18	1	69	1.25
55890027--55890076	26	1.9	26	87	0	73	8	28	2	62	1.35
55891161--55891270	55	2.0	55	100	0	220	29	25	21	23	1.99
55893699--55894050	162	2.2	162	93	0	605	27	20	16	35	1.94
55898805--55898849	19	2.4	19	88	7	65	60	0	2	37	1.09
55900226--55900275	16	3.2	16	82	2	57	32	6	0	62	1.20
55902262--55902416	43	3.6	42	79	4	150	23	15	27	33	1.95
55902262--55902411	42	3.5	42	79	6	133	24	16	26	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55905297--55905349	15	3.9	13	81	18	56	77	0	1	20	0.87
55905308--55905350	5	8.6	5	87	7	61	81	0	0	18	0.69
55905285--55905367	27	3.0	26	80	18	78	74	2	3	19	1.07
55905261--55905351	11	8.1	11	70	9	58	73	2	3	20	1.08
55906032--55906063	3	10.7	3	100	0	64	68	0	31	0	0.90
55906267--55906749	89	5.4	89	81	2	416	28	19	17	34	1.95
55906267--55906748	45	10.9	44	80	3	437	28	19	17	34	1.95
55908314--55908338	13	1.9	13	100	0	50	32	4	24	40	1.73
55912357--55912386	16	1.9	15	93	6	51	30	23	0	46	1.52
55915206--55915278	38	1.9	37	84	13	96	31	23	1	43	1.62
55915206--55915278	37	2.0	36	82	15	87	31	23	1	43	1.62
55915408--55915843	51	8.6	50	75	6	342	31	26	15	26	1.96
55915406--55915592	101	1.8	102	88	3	288	32	28	16	22	1.95
55915455--55915742	151	1.9	152	85	2	400	31	26	15	25	1.96
55915510--55915839	102	3.3	102	86	2	398	30	26	14	28	1.95
55915453--55915839	151	2.5	150	80	5	395	31	26	14	27	1.95
55920241--55920368	43	3.0	42	79	15	154	31	28	18	21	1.97
55923736--55923855	42	2.8	42	74	21	115	45	1	0	52	1.16
55923827--55923893	29	2.4	27	82	5	71	41	1	2	53	1.25
55923816--55923886	28	2.7	25	74	18	63	42	1	1	54	1.17
55925082--55925138	29	2.0	29	96	0	105	38	14	24	22	1.91
55928544--55929052	162	3.1	162	93	0	883	26	19	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55931499--55931548	24	2.1	24	96	0	91	20	22	30	28	1.98
55936086--55936135	24	2.1	24	96	0	91	20	22	30	28	1.98
55938624--55938680	28	2.0	28	96	0	105	59	7	15	17	1.57
55939022--55939065	14	3.1	14	83	6	52	13	18	2	65	1.36
55939039--55939066	14	2.0	14	100	0	56	21	14	0	64	1.29
55939506--55939618	56	2.0	56	100	0	226	42	9	8	38	1.69
55939525--55939613	28	3.2	28	62	23	69	43	6	10	39	1.65
55943028--55943140	30	3.8	30	85	3	140	30	20	25	23	1.99
55943320--55943522	32	6.4	32	90	0	291	37	20	21	20	1.95
55943550--55943610	27	2.3	26	81	15	72	34	22	22	19	1.97
55943673--55943750	24	3.2	24	87	3	104	52	21	5	20	1.66
55943686--55943783	24	4.1	24	76	11	94	51	20	5	23	1.67
55943855--55943998	27	5.4	27	81	1	157	25	22	18	34	1.96
55950273--55950320	18	2.7	17	81	9	60	41	4	16	37	1.68
55952452--55952530	38	2.1	38	81	13	92	27	3	2	65	1.22
55952568--55952629	20	2.9	22	79	13	76	27	0	8	64	1.21
55952689--55952713	6	4.2	6	100	0	50	32	0	0	68	0.90
55975070--55975135	21	3.2	20	76	18	64	69	9	1	19	1.23
55975665--55975713	22	2.1	23	85	14	66	38	8	4	48	1.52
55975842--55975901	20	3.0	20	67	0	57	43	1	0	55	1.10
55975922--55976001	31	2.6	30	82	3	106	43	0	2	53	1.14
55979841--55979909	16	4.2	16	96	3	129	24	0	37	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55979841--55979909	33	2.1	32	97	2	129	24	0	37	37	1.56
55979890--55979980	45	2.0	45	85	2	121	27	6	28	37	1.82
55980145--55980181	19	2.0	19	85	15	51	54	0	0	45	1.00
55980125--55980414	120	2.4	120	88	3	447	48	5	2	43	1.36
55982417--55982484	17	4.2	17	74	22	67	57	1	0	41	1.08
55982410--55982449	14	2.9	15	82	14	50	52	0	0	47	1.00
55982416--55982482	16	4.3	15	71	25	50	56	1	0	41	1.08
55985240--55985375	52	2.6	50	85	12	184	30	9	20	39	1.84
55987050--55987084	18	1.9	18	88	0	52	57	8	0	34	1.29
55987411--55987476	33	2.0	33	96	0	123	40	18	3	37	1.66
55989294--55989397	49	2.1	49	91	3	165	29	8	10	50	1.66
55990701--55990730	15	1.9	16	93	6	53	43	0	6	50	1.28
55990675--55991261	120	4.9	120	97	0	1093	41	1	4	52	1.29
55990821--55990850	15	1.9	16	93	6	53	43	0	6	50	1.28
55990857--55990917	26	2.4	25	83	8	77	39	0	1	59	1.08
55990941--55990970	15	1.9	16	93	6	53	43	0	6	50	1.28
55990963--55990998	18	2.1	17	90	10	56	36	2	0	61	1.11
55991061--55991090	15	1.9	16	93	6	53	43	0	6	50	1.28
55991083--55991118	18	2.1	17	90	10	56	36	2	0	61	1.11
55991181--55991210	15	1.9	16	93	6	53	43	0	6	50	1.28
55991463--55991518	16	3.5	16	90	0	85	25	33	1	39	1.66
55993376--55993722	162	2.1	162	92	0	595	25	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56000784--56000813	11	2.8	11	95	5	53	30	23	0	46	1.52
56003935--56004031	30	3.2	30	86	1	122	30	18	25	24	1.98
56004234--56004359	64	2.0	64	84	6	166	38	18	19	23	1.93
56004234--56004382	32	4.7	32	80	6	149	39	19	20	20	1.93
56004407--56004465	27	2.2	27	82	11	68	32	20	25	22	1.98
56004531--56004582	24	2.2	24	92	0	86	50	23	7	19	1.73
56004569--56004617	24	2.0	24	88	0	71	53	20	2	24	1.56
56004698--56004789	26	3.5	26	82	4	112	27	25	19	28	1.99
56012033--56012063	14	2.3	14	94	5	55	51	6	9	32	1.60
56012301--56012443	34	4.2	34	88	0	196	19	23	15	41	1.89
56015231--56015274	20	2.1	22	84	16	58	13	9	9	68	1.40
56015306--56015348	21	2.0	23	81	9	54	32	11	11	44	1.77
56015447--56015580	39	3.4	39	72	9	94	39	18	20	21	1.92
56015638--56015809	41	4.2	41	86	3	204	20	19	28	31	1.97
56015905--56015951	25	2.0	25	83	8	62	61	8	8	21	1.51
56016252--56016297	7	6.9	7	75	9	51	17	2	50	30	1.58
56016252--56016297	14	3.5	13	82	14	58	17	2	50	30	1.58
56016590--56016654	28	2.3	28	84	5	78	27	0	35	36	1.57
56019848--56019934	43	2.0	43	86	0	120	33	12	11	42	1.79
56020211--56020426	43	5.0	42	89	2	306	24	17	30	27	1.97
56020211--56020426	85	2.5	85	86	3	308	24	17	30	27	1.97
56022353--56022394	13	3.4	13	80	12	52	30	19	4	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56024671--56024701	14	2.3	14	94	5	55	51	6	9	32	1.60
56024681--56024748	22	3.2	21	75	19	61	42	4	13	39	1.64
56026008--56026093	41	2.1	41	97	0	163	50	19	6	23	1.72
56033864--56034375	162	3.2	162	95	0	909	26	20	17	34	1.95
56039878--56039918	21	2.0	21	81	18	50	31	19	26	21	1.97
56042462--56042507	21	2.2	21	88	0	65	32	17	6	43	1.75
56043797--56043846	16	3.2	16	82	2	57	32	8	0	60	1.26
56047803--56047845	13	3.1	14	84	12	54	60	0	0	39	0.97
56050319--56050405	3	29.0	3	86	0	84	56	1	9	33	1.39
56050428--56050468	18	2.3	18	87	8	57	65	0	9	24	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208