genome.fa.s18.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  202  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62416498--62416761	88	3.0	86	81	3	233	35	20	7	37	1.81
62416596--62416758	88	1.9	87	90	3	265	36	19	9	34	1.85
62416790--62416837	20	2.5	20	83	13	64	60	0	2	37	1.09
62417163--62417240	19	4.2	18	75	8	75	35	3	0	60	1.15
62417159--62417237	10	8.3	10	74	13	60	34	3	0	62	1.14
62417194--62417274	28	2.9	27	75	14	74	35	1	1	61	1.12
62417192--62417255	10	6.6	10	74	13	53	35	1	0	62	1.05
62418162--62418195	17	2.0	17	94	0	59	44	50	0	5	1.26
62422801--62422834	17	2.0	17	94	0	59	44	50	0	5	1.26
62424062--62424123	28	2.2	29	82	8	74	62	1	11	24	1.37
62425066--62425111	24	2.0	23	82	4	56	54	4	0	41	1.20
62425960--62426084	62	2.0	61	89	4	189	33	9	16	40	1.81
62426219--62426302	32	2.7	32	80	9	93	35	8	4	51	1.53
62427900--62427933	17	2.0	17	94	0	59	44	50	0	5	1.26
62432541--62432574	17	2.0	17	94	0	59	44	50	0	5	1.26
62440581--62440638	5	12.0	5	78	10	50	70	5	0	24	1.07
62440581--62440638	9	6.0	10	73	15	50	70	5	0	24	1.07
62440582--62440638	16	3.6	16	74	13	55	71	5	0	22	1.05
62440581--62440645	13	4.6	14	77	11	62	72	4	0	23	1.03
62443534--62443569	14	2.4	16	90	9	58	16	2	0	80	0.83
62445688--62445743	11	5.2	11	71	4	51	71	3	3	21	1.17
62445999--62446072	28	2.6	28	85	6	87	35	4	1	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62446023--62446105	18	4.6	18	70	14	64	37	3	0	59	1.15
62446089--62446117	11	2.7	11	94	5	51	41	0	0	58	0.98
62451090--62451153	20	3.3	19	78	8	58	59	0	1	39	1.07
62451101--62451164	18	3.4	19	80	8	60	53	0	3	43	1.16
62451090--62451157	19	3.5	20	82	11	79	58	0	1	39	1.07
62451444--62451541	10	10.3	9	76	14	65	38	2	0	59	1.09
62451483--62451543	19	3.0	21	76	13	65	40	1	0	57	1.08
62451439--62451549	46	2.4	48	81	7	129	39	2	0	57	1.13
62451453--62451549	9	10.2	10	73	12	62	37	2	0	60	1.08
62451617--62451798	99	1.9	98	87	5	271	31	9	21	36	1.86
62454169--62454278	54	2.0	54	89	0	166	50	8	12	29	1.69
62454790--62454823	17	2.0	17	94	0	59	44	50	0	5	1.26
62459429--62459462	17	2.0	17	94	0	59	44	50	0	5	1.26
62460265--62460720	72	6.3	72	93	1	747	30	21	21	26	1.98
62463143--62463202	30	2.0	30	100	0	120	43	20	6	30	1.77
62463792--62463998	87	2.4	87	80	4	220	33	18	7	40	1.78
62464042--62464162	10	12.4	10	69	11	72	66	2	3	28	1.20
62464033--62464127	49	1.9	49	80	4	111	66	2	3	28	1.18
62464042--62464162	29	4.1	28	74	13	84	66	2	3	28	1.20
62466793--62466873	36	2.3	34	80	18	94	40	2	4	51	1.37
62466998--62467043	19	2.5	18	82	3	56	36	0	4	58	1.18
62467155--62467209	21	2.6	21	91	8	94	27	40	9	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62470376--62470556	84	2.2	84	94	3	314	35	18	10	34	1.86
62471532--62471581	17	2.7	20	78	18	70	10	0	44	46	1.37
62476171--62476220	17	2.7	20	78	18	70	10	0	44	46	1.37
62478498--62478689	93	2.1	93	83	5	241	31	11	22	33	1.90
62480100--62480140	22	1.9	21	85	5	55	39	0	0	60	0.96
62484134--62484258	62	2.0	61	87	1	178	34	10	15	40	1.81
62484359--62484472	31	3.7	30	74	14	90	39	11	4	44	1.60
62484352--62484471	61	2.0	61	85	3	161	38	12	4	45	1.61
62491072--62491203	61	2.1	61	83	5	158	42	11	4	41	1.61
62494363--62494522	79	2.0	79	100	0	320	41	17	19	21	1.90
62495087--62495139	26	2.0	26	100	0	106	54	3	3	37	1.36
62497004--62497050	24	2.0	24	100	0	94	29	8	23	38	1.84
62497413--62497452	21	1.9	21	100	0	80	20	15	15	50	1.79
62500801--62500837	19	1.9	19	88	0	56	51	2	5	40	1.39
62513602--62513635	17	2.0	17	94	0	59	44	50	0	5	1.26
62515220--62515807	72	8.1	72	89	5	887	28	19	22	29	1.98
62515220--62515807	296	2.0	286	89	4	901	28	19	22	29	1.98
62519871--62519907	19	2.0	20	84	10	51	27	18	0	54	1.44
62520749--62520787	3	13.0	3	100	0	78	33	0	0	66	0.92
62521022--62521071	17	2.7	20	78	18	70	10	0	44	46	1.37
62525661--62525710	17	2.7	20	78	18	70	10	0	44	46	1.37
62529922--62530041	30	4.1	29	80	12	120	33	13	4	49	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62529922--62530034	60	1.9	59	82	8	140	32	13	4	49	1.62
62530260--62530296	9	4.1	9	92	0	65	45	13	10	29	1.77
62530511--62530570	30	2.0	31	86	3	86	20	40	0	40	1.52
62531203--62531228	5	5.2	5	100	0	52	23	19	19	38	1.93
62536133--62536252	61	2.0	61	83	3	152	45	5	12	35	1.66
62536140--62536265	61	2.1	61	80	3	137	49	6	10	34	1.62
62537642--62537682	21	2.0	21	85	0	55	34	4	14	46	1.66
62539862--62539982	50	2.4	50	88	2	172	36	19	11	33	1.87
62541754--62541952	89	2.3	89	85	5	280	36	9	19	34	1.83
62541757--62542002	89	2.8	87	80	6	237	36	8	18	36	1.82
62544289--62544322	17	2.0	17	94	0	59	44	50	0	5	1.26
62547927--62547960	17	2.0	17	94	0	59	44	50	0	5	1.26
62552565--62552598	17	2.0	17	94	0	59	44	50	0	5	1.26
62554030--62554063	17	2.0	17	94	0	59	44	50	0	5	1.26
62556405--62556513	54	2.0	54	90	0	173	30	11	9	49	1.69
62557362--62557390	15	2.0	15	93	6	51	55	0	0	44	0.99
62557921--62558043	57	2.3	52	82	12	135	40	18	11	29	1.86
62561166--62561288	61	2.0	61	80	3	140	39	6	11	42	1.67
62561439--62561478	21	1.9	21	100	0	80	50	15	15	20	1.79
62561840--62561886	24	2.0	24	100	0	94	38	23	8	29	1.84
62563741--62563793	26	2.0	26	100	0	106	37	3	3	54	1.36
62564358--62564517	79	2.0	79	100	0	320	21	19	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62567653--62567775	61	2.0	61	84	3	158	40	4	12	42	1.64
62579409--62579528	61	2.0	61	85	3	161	45	4	12	38	1.61
62579416--62579541	61	2.1	61	81	3	146	48	4	10	36	1.58
62579626--62579750	62	2.0	61	87	1	178	40	15	10	34	1.81
62585378--62585533	85	1.9	85	87	5	219	38	10	17	32	1.85
62589976--62590098	61	2.0	61	82	6	151	39	6	12	42	1.68
62591593--62591647	21	2.6	22	91	8	96	23	9	40	27	1.85
62591758--62591804	19	2.6	18	82	3	58	59	4	0	36	1.17
62591866--62591974	36	3.5	34	67	31	100	53	5	1	39	1.35
62591928--62592007	36	2.3	34	78	20	85	52	5	2	40	1.37
62594806--62594927	62	2.0	61	90	1	190	40	13	9	35	1.78
62597200--62597261	28	2.2	29	82	8	74	24	11	1	62	1.37
62602145--62602287	72	2.0	72	93	2	243	27	20	20	30	1.98
62609233--62609275	21	2.0	21	82	8	52	32	6	13	46	1.71
62610123--62610161	21	1.9	21	89	5	62	66	0	0	33	0.92
62610136--62610167	16	2.0	17	88	11	50	62	3	0	34	1.11
62612740--62612923	99	1.9	99	87	3	273	37	21	9	31	1.86
62612991--62613086	9	10.2	10	71	15	53	60	0	2	37	1.09
62613048--62613091	18	2.5	17	75	7	52	59	0	2	38	1.10
62612991--62613100	46	2.4	47	81	9	127	57	0	2	40	1.13
62613026--62613095	10	7.4	10	74	20	53	58	0	1	40	1.07
62613140--62613193	29	1.9	28	82	14	67	53	7	1	37	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62613385--62613422	18	2.1	19	85	5	51	44	2	0	52	1.14
62613385--62613441	19	2.9	21	84	7	66	43	3	0	52	1.18
62613483--62613622	70	2.0	70	87	6	205	32	10	15	41	1.82
62623946--62624139	89	2.2	89	87	2	275	36	24	8	30	1.86
62624242--62624302	10	6.0	11	74	16	51	57	0	1	40	1.08
62624235--62624329	19	5.0	18	73	13	66	60	0	2	37	1.09
62624238--62624328	9	9.5	10	74	15	68	62	0	2	35	1.07
62624237--62624328	29	3.2	29	71	17	75	61	0	2	35	1.08
62624215--62624344	56	2.3	56	83	7	158	58	0	2	39	1.11
62624259--62624382	56	2.2	57	82	7	144	60	1	5	32	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208