genome.fa.s18.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  121  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39912054--39912176	35	3.5	35	87	0	183	35	33	15	15	1.89
39915826--39915893	29	2.3	29	82	5	84	27	29	13	29	1.94
39915715--39916216	174	2.9	174	97	0	941	31	25	14	29	1.95
39916000--39916067	29	2.3	29	85	5	93	27	30	13	27	1.94
39916169--39916247	29	2.7	30	82	13	110	29	30	15	25	1.96
39924765--39924950	80	2.3	81	83	9	222	27	27	20	24	1.99
39924767--39924950	40	4.6	40	82	7	196	27	27	20	25	1.99
39927290--39927357	29	2.3	29	82	5	84	27	29	13	29	1.94
39927464--39927531	29	2.3	29	85	5	93	27	30	13	27	1.94
39927633--39927711	29	2.7	30	82	13	110	29	30	15	25	1.96
39927179--39927680	174	2.9	174	97	0	941	31	24	14	29	1.94
39931442--39931552	35	3.0	36	83	11	120	6	30	9	54	1.57
39931479--39931542	5	12.6	5	73	15	51	3	34	4	57	1.35
39932071--39932187	27	4.3	27	71	6	92	41	19	18	19	1.90
39932230--39932298	28	2.5	28	81	6	79	28	26	15	28	1.96
39935643--39935671	15	1.9	15	100	0	58	27	13	24	34	1.93
39938008--39938110	27	3.8	27	80	1	125	40	23	19	16	1.91
39938405--39938469	33	2.0	32	81	3	76	24	24	23	27	2.00
39946856--39946902	21	2.2	22	84	3	60	25	19	34	21	1.96
39954310--39954409	39	2.5	39	85	1	128	34	21	30	15	1.93
39955175--39955201	14	1.9	14	100	0	54	40	0	0	59	0.98
39958011--39958364	33	10.4	33	65	26	143	18	20	28	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39958007--39958373	103	3.6	103	92	0	619	19	20	28	31	1.97
39961164--39961206	21	2.0	21	95	0	77	27	0	37	34	1.57
39961187--39961219	16	2.1	16	94	0	57	33	0	36	30	1.58
39961198--39961292	45	2.1	44	86	1	127	35	5	27	31	1.79
39961454--39961488	18	2.0	17	88	5	52	54	0	0	45	0.99
39961412--39961484	27	2.7	27	76	8	76	52	2	0	45	1.15
39961373--39961644	144	1.9	147	92	3	460	46	2	4	46	1.36
39961598--39961632	18	2.0	17	88	5	52	54	0	0	45	0.99
39965514--39965543	12	2.5	12	94	0	51	10	46	23	20	1.80
39971325--39971466	75	1.9	75	80	8	164	29	4	6	59	1.41
39973093--39973228	68	2.0	68	94	0	236	33	21	16	27	1.95
39994090--39994451	182	2.0	181	90	1	562	40	9	15	33	1.80
39994863--39994901	21	1.9	20	89	5	60	20	15	17	46	1.84
39995754--39995822	17	4.1	17	88	0	102	15	27	31	24	1.96
39995743--39995815	34	2.1	34	94	0	128	16	30	31	21	1.95
39995946--39996038	42	2.2	42	83	9	109	16	24	29	30	1.96
39997526--39997574	22	2.2	22	85	0	62	20	26	20	32	1.97
39999481--39999539	25	2.4	25	88	0	91	20	28	16	33	1.95
40000834--40000874	17	2.5	16	85	14	57	26	0	12	60	1.31
40002697--40002774	35	2.2	35	83	2	102	41	25	12	20	1.88
40002708--40002789	35	2.3	35	87	2	110	42	25	12	19	1.86
40006375--40006441	31	2.2	31	86	5	91	34	13	8	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40008050--40008083	17	2.0	17	94	0	59	41	14	0	44	1.45
40010134--40010184	22	2.5	20	84	9	66	31	23	3	41	1.73
40010136--40010178	22	2.0	21	90	4	68	25	25	4	44	1.73
40010344--40010476	37	3.4	40	72	11	112	33	24	15	25	1.95
40011406--40011468	5	12.8	5	96	3	119	58	0	0	41	0.98
40013940--40014037	49	2.0	49	87	0	142	26	14	11	47	1.77
40014894--40014934	19	2.0	22	86	13	61	21	9	0	68	1.18
40021385--40021612	40	5.7	40	95	0	402	31	20	27	21	1.98
40029776--40030003	40	5.7	40	97	0	420	31	20	27	21	1.98
40037124--40037282	63	2.5	62	84	8	196	24	22	30	22	1.99
40044875--40044973	50	2.0	50	84	7	130	25	23	31	20	1.98
40047115--40047143	14	2.1	14	100	0	58	27	6	27	37	1.82
40063904--40063937	16	2.2	15	89	5	50	55	2	0	41	1.15
40064003--40064062	30	2.0	30	87	3	86	45	11	11	31	1.77
40075792--40075826	13	2.7	13	95	0	61	40	14	2	42	1.60
40089324--40089384	13	4.8	12	75	13	50	32	0	26	40	1.56
40099020--40099451	89	4.9	88	83	3	474	33	19	19	28	1.96
40099020--40099504	134	3.6	133	86	2	618	33	19	18	27	1.96
40099020--40099634	44	13.6	44	75	11	467	33	19	19	28	1.96
40100298--40100391	47	2.0	47	87	0	134	24	26	20	28	1.99
40110040--40110107	21	3.4	20	80	6	75	57	0	1	41	1.08
40110040--40110127	19	4.4	20	80	11	74	57	1	2	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40110076--40110126	10	5.2	10	76	11	52	56	1	3	37	1.29
40110081--40110128	9	5.1	9	80	9	60	60	2	4	33	1.27
40110311--40110381	10	7.2	10	76	9	58	33	1	1	63	1.12
40110359--40110441	29	2.9	28	75	12	87	33	1	2	62	1.16
40116941--40116977	19	1.9	19	100	0	74	37	13	5	43	1.67
40118488--40118575	25	3.6	24	77	8	88	26	19	26	28	1.99
40118518--40118590	25	3.0	25	90	6	105	31	19	26	23	1.98
40124473--40124560	25	3.6	25	80	10	92	28	25	22	23	1.99
40130123--40130167	7	6.4	7	86	0	54	37	37	6	17	1.76
40135710--40135743	14	2.4	14	100	0	68	61	0	0	38	0.96
40144648--40144697	25	2.0	25	100	0	100	60	12	0	28	1.32
40145789--40145856	16	4.2	16	94	0	118	27	0	36	35	1.58
40145837--40145946	45	2.6	41	78	9	116	32	5	29	32	1.80
40146072--40146113	15	2.7	16	82	14	52	52	2	0	45	1.13
40146081--40146122	15	2.9	15	82	10	52	52	0	0	47	1.00
40151547--40151586	21	1.9	21	89	0	62	52	12	10	25	1.70
40152617--40152654	19	2.0	20	94	5	69	18	34	10	36	1.85
40155415--40155612	36	5.5	36	86	0	279	37	28	15	19	1.92
40156496--40156537	21	2.0	21	81	9	50	26	7	4	61	1.42
40160610--40160651	21	2.0	21	100	0	84	33	14	33	19	1.91
40162146--40162375	58	4.0	58	82	2	250	33	10	21	34	1.88
40162385--40162549	69	2.4	68	88	2	231	19	24	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40171041--40171284	40	6.1	40	89	0	355	20	29	17	31	1.96
40174311--40174339	12	2.3	13	94	5	51	17	0	6	75	1.01
40174834--40174901	35	1.9	36	96	3	129	41	2	23	32	1.69
40181646--40181941	75	3.9	75	81	1	315	38	19	18	23	1.93
40181650--40181941	150	1.9	150	81	1	352	38	19	18	23	1.93
40207125--40207669	47	11.6	47	89	1	761	32	10	31	26	1.89
40207520--40207594	22	3.3	22	67	17	62	29	8	34	28	1.85
40207788--40207867	37	2.2	37	86	4	108	23	17	31	27	1.97
40211158--40211202	23	1.9	24	86	4	65	26	51	2	20	1.59
40214449--40214529	26	3.2	26	62	28	64	22	14	29	33	1.94
40214339--40214534	51	3.9	50	82	6	227	23	17	28	29	1.97
40214343--40214546	102	2.0	101	83	6	261	25	17	26	30	1.97
40214538--40214624	45	1.9	45	92	0	147	24	16	25	34	1.95
40221047--40221108	10	6.3	10	77	7	56	32	0	3	64	1.09
40222564--40222589	2	13.0	2	100	0	52	50	0	0	50	1.00
40223665--40223713	15	3.1	15	82	8	53	34	4	2	59	1.28
40225788--40225831	22	2.0	23	82	13	56	31	2	20	45	1.64
40225812--40225848	16	2.3	16	95	0	65	32	2	13	51	1.55
40228099--40228144	24	1.9	24	81	0	56	30	23	28	17	1.97
40228135--40228227	48	1.9	49	82	6	118	38	18	25	17	1.92
40228194--40228262	26	2.7	26	75	8	77	40	21	21	15	1.91
40232409--40232476	33	2.1	33	86	5	93	35	16	5	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40235437--40235700	40	6.7	40	86	4	302	27	28	20	24	1.99
40235437--40235700	79	3.3	78	86	3	325	27	28	20	24	1.99
40235437--40235700	119	2.2	118	80	6	307	27	28	20	24	1.99
40235632--40235709	40	1.9	41	82	10	97	26	28	21	23	1.99
40252799--40252872	20	3.8	20	75	10	71	64	2	5	27	1.28
40252810--40252853	21	2.1	21	86	0	61	68	2	4	25	1.20
40252889--40252913	13	1.9	13	100	0	50	40	16	0	44	1.47
40253089--40253182	10	9.7	10	72	14	63	30	1	3	64	1.16
40253084--40253183	40	2.6	39	87	7	152	30	2	3	65	1.19
40253119--40253175	30	1.9	29	85	3	78	31	1	1	64	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208