genome.fa.s18.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  103  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34500354--34500554	60	3.3	60	81	6	181	41	13	17	26	1.88
34500422--34500554	60	2.2	60	86	2	187	42	15	17	24	1.88
34500509--34500601	47	2.0	47	86	0	132	39	13	20	25	1.90
34515667--34515726	29	2.1	29	96	0	111	36	11	15	36	1.83
34515670--34515733	29	2.2	29	91	0	101	40	9	14	35	1.78
34519032--34519061	14	2.1	14	100	0	60	20	30	6	43	1.77
34519343--34519482	57	2.3	60	85	9	189	20	25	22	30	1.98
34526666--34526744	33	2.4	32	77	10	79	15	39	24	21	1.91
34528387--34528565	50	3.6	50	90	0	259	21	31	21	25	1.98
34533318--34533347	15	2.0	15	93	0	51	23	3	6	66	1.30
34535380--34535566	91	2.1	91	87	6	272	20	19	14	45	1.84
34535388--34535611	46	4.9	46	85	5	251	21	19	14	44	1.86
34535396--34535679	45	6.3	45	81	6	222	22	19	15	43	1.87
34540098--34540136	19	2.1	19	85	9	53	33	5	7	53	1.51
34541396--34541528	60	2.2	61	80	7	146	41	12	5	41	1.64
34542169--34542376	56	4.0	52	83	5	224	24	13	21	40	1.90
34542260--34542376	49	2.3	52	89	4	177	26	18	15	39	1.91
34547674--34547757	6	14.2	6	77	5	82	47	1	15	35	1.53
34547960--34547992	12	2.8	12	95	0	57	39	0	27	33	1.57
34547997--34548036	17	2.4	17	95	0	71	57	0	5	37	1.21
34548010--34548048	18	2.2	17	86	4	51	64	0	5	30	1.15
34552634--34552833	87	2.3	88	88	3	287	58	12	5	24	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34552738--34552807	32	2.2	31	76	16	72	64	12	2	20	1.40
34559844--34559882	3	13.0	3	100	0	78	66	0	0	33	0.92
34561218--34561258	20	2.0	20	85	9	55	36	0	2	60	1.10
34561249--34561309	29	2.1	29	87	6	88	54	3	0	42	1.17
34563158--34563579	85	5.0	85	87	4	568	31	19	23	24	1.98
34563158--34563575	127	3.3	126	89	3	599	31	19	24	24	1.98
34563158--34563579	42	10.0	42	86	3	562	31	19	23	24	1.98
34564026--34564112	21	4.1	21	93	0	129	3	45	19	31	1.67
34569466--34569714	50	4.8	50	84	4	275	20	29	24	26	1.99
34569465--34569714	100	2.4	104	87	6	348	20	29	24	26	1.99
34570039--34570096	30	1.9	30	89	0	89	31	24	3	41	1.71
34572388--34572744	9	40.8	9	71	16	243	32	2	19	45	1.65
34572419--34572476	16	3.8	16	71	13	50	34	3	15	46	1.63
34572388--34572744	43	8.2	44	70	15	201	32	2	19	45	1.65
34572451--34572606	59	2.6	60	88	7	237	33	3	18	44	1.68
34572559--34572615	19	3.1	19	82	12	57	31	0	19	49	1.49
34572377--34572715	25	12.7	25	70	16	168	32	2	19	45	1.64
34572377--34572744	34	10.8	34	71	17	205	32	2	19	45	1.65
34572820--34572889	28	2.5	28	85	2	95	34	2	18	44	1.65
34573076--34573108	13	2.5	13	95	0	57	45	6	12	36	1.66
34576353--34576414	21	2.8	22	75	20	67	35	35	3	25	1.72
34577749--34577840	40	2.3	40	92	0	148	21	31	17	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34578473--34578531	30	2.0	30	83	6	75	22	37	0	40	1.54
34580501--34580545	23	2.0	22	82	4	54	64	0	0	35	0.94
34580549--34580610	9	6.7	9	72	7	52	32	1	43	22	1.63
34585564--34585596	12	2.8	12	90	0	57	39	0	6	54	1.25
34586966--34586991	8	3.2	8	100	0	52	23	11	0	65	1.25
34599707--34599745	17	2.3	17	100	0	78	46	15	12	25	1.81
34601219--34601353	69	2.0	68	85	7	184	41	2	4	51	1.37
34604537--34604596	26	2.3	26	91	0	93	41	13	8	36	1.74
34605309--34605375	34	2.0	33	82	2	80	20	22	23	32	1.98
34612255--34612314	26	2.3	26	91	0	93	41	13	8	36	1.74
34613168--34613212	23	1.9	24	86	4	65	26	48	2	22	1.62
34615116--34615172	26	2.2	26	83	0	69	21	22	17	38	1.93
34615702--34615743	22	1.9	22	90	0	66	9	19	28	42	1.82
34615806--34615990	43	4.3	43	81	1	192	30	29	18	22	1.97
34615806--34616033	86	2.7	86	79	6	225	30	28	17	23	1.97
34616085--34616110	5	5.2	5	100	0	52	19	0	0	80	0.71
34618032--34618069	8	4.9	8	83	6	51	5	34	13	47	1.65
34618040--34618069	15	2.0	15	93	0	51	3	36	13	46	1.60
34622024--34622048	13	1.9	13	100	0	50	44	0	0	56	0.99
34622328--34622359	14	2.3	14	94	0	55	31	43	3	21	1.68
34622489--34622618	61	2.1	63	90	5	203	46	23	0	30	1.52
34622645--34622685	21	2.0	21	85	0	55	29	43	0	26	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34622782--34622816	14	2.5	14	95	0	61	42	28	0	28	1.56
34622790--34622824	14	2.5	14	90	0	52	45	25	0	28	1.54
34623147--34623421	41	6.7	41	84	0	361	27	29	18	24	1.98
34623147--34623421	82	3.4	82	95	0	487	27	29	18	24	1.98
34625230--34625272	16	2.9	15	86	13	54	46	0	2	51	1.13
34633198--34633245	21	2.3	21	85	0	69	45	12	20	20	1.83
34635183--34635216	5	6.8	5	96	0	50	20	0	67	11	1.21
34646143--34646183	20	2.1	20	86	4	57	48	0	7	43	1.30
34650103--34650137	18	2.0	17	88	5	52	71	2	8	17	1.23
34652557--34652606	19	2.8	19	82	17	63	42	0	0	58	0.98
34654544--34654588	21	2.1	21	87	0	63	53	13	2	31	1.52
34659762--34659791	12	2.5	12	94	0	51	10	43	20	26	1.83
34661221--34661278	25	2.3	25	76	5	64	53	10	1	34	1.45
34663281--34664811	765	2.0	765	98	0	2981	33	15	20	31	1.93
34666565--34666605	20	2.0	21	95	4	75	53	0	2	43	1.13
34677527--34677588	29	2.1	30	84	3	81	56	14	3	25	1.53
34677622--34677648	14	1.9	14	100	0	54	51	14	11	22	1.73
34685035--34685106	25	2.9	25	89	2	101	19	26	19	34	1.96
34687110--34687155	4	11.5	4	100	0	92	50	23	0	26	1.50
34688908--34688938	15	2.1	15	93	0	53	74	3	16	6	1.16
34692131--34692176	23	2.0	23	83	8	58	32	2	8	56	1.42
34692408--34692444	19	1.9	19	88	0	56	40	2	5	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34694694--34694731	6	6.3	6	100	0	76	68	0	0	31	0.90
34699777--34699801	6	4.2	6	100	0	50	0	20	32	48	1.50
34704583--34704637	23	2.4	23	80	19	71	25	30	1	41	1.66
34704583--34704637	22	2.5	21	83	16	67	25	30	1	41	1.66
34704583--34704637	11	4.9	11	77	16	60	25	30	1	41	1.66
34706236--34706271	17	2.1	17	94	0	63	27	16	27	27	1.97
34707006--34707093	45	2.0	45	93	0	149	36	0	12	51	1.40
34707016--34707163	70	2.1	70	96	0	269	37	0	12	49	1.41
34707086--34707208	45	2.7	45	97	0	228	36	0	13	49	1.43
34707006--34707267	115	2.3	114	97	0	488	38	0	12	48	1.45
34707131--34707535	69	5.9	69	94	2	724	38	0	12	48	1.46
34707131--34707535	206	2.0	206	96	2	740	38	0	12	48	1.46
34710329--34710699	125	3.0	125	87	3	557	29	21	18	30	1.96
34713389--34713424	17	2.1	17	89	0	54	83	0	13	2	0.76
34715631--34715810	91	2.0	91	96	0	333	28	13	16	41	1.86
34726256--34726667	131	3.1	132	83	2	515	26	25	18	29	1.98
34726661--34726918	89	2.9	89	84	1	329	24	24	24	27	2.00
34727200--34727301	11	9.9	11	69	21	60	52	0	2	44	1.16
34727221--34727261	11	3.6	11	96	3	73	46	0	2	51	1.14
34727304--34727328	8	3.1	8	100	0	50	84	0	0	16	0.63
34727338--34727369	5	6.2	5	92	7	55	0	43	56	0	0.99
34727523--34727625	43	2.4	44	85	1	127	32	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34727828--34728123	45	6.6	45	73	9	187	25	21	20	32	1.98
34727742--34727987	134	1.9	131	81	4	305	27	22	19	30	1.98
34727918--34728167	134	1.9	133	81	5	308	28	21	19	31	1.97
34727735--34728160	44	9.6	43	71	8	189	26	22	19	31	1.97
34727728--34728165	178	2.5	178	88	0	646	26	22	19	32	1.97
34728447--34728524	24	3.2	24	94	0	129	28	24	14	33	1.94
34732699--34732745	19	2.5	20	86	6	62	42	10	21	25	1.85
34734517--34734549	15	2.1	16	88	5	50	63	0	6	30	1.18
34735437--34735475	18	2.2	17	90	4	60	43	0	0	56	0.99
34735492--34735655	9	19.4	9	67	23	58	60	3	1	34	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208