genome.fa.s18.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  147  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47865069--47865096	3	9.3	3	100	0	56	67	0	0	32	0.91
47867128--47867171	23	1.9	23	86	9	63	70	4	6	18	1.27
47867141--47867179	17	2.2	18	86	4	53	69	5	10	15	1.34
47870949--47870980	16	2.0	16	93	0	55	25	15	0	59	1.36
47871110--47871198	46	2.0	44	82	8	108	35	24	14	24	1.93
47871208--47871396	51	3.7	51	79	5	213	32	25	16	24	1.96
47871206--47871390	101	1.8	102	87	3	275	32	25	17	24	1.97
47874163--47874274	44	2.6	43	82	9	140	32	25	17	25	1.97
47878545--47878594	18	2.8	18	75	3	57	48	0	6	46	1.27
47878616--47878656	17	2.3	18	87	4	57	63	4	14	17	1.47
47879104--47879143	20	2.0	20	90	0	62	27	10	12	50	1.72
47882440--47882487	23	2.1	21	82	17	53	47	2	22	27	1.62
47885283--47885419	27	5.1	27	79	5	125	32	12	25	29	1.92
47890231--47890258	13	2.2	13	100	0	56	21	25	7	46	1.76
47891946--47891972	3	9.0	3	100	0	54	0	33	33	33	1.58
47892187--47892393	83	2.6	79	80	11	235	45	21	13	20	1.84
47893724--47893749	2	13.0	2	100	0	52	50	0	50	0	1.00
47893798--47893824	14	1.9	14	100	0	54	7	14	25	51	1.68
47897782--47897818	18	2.1	18	94	0	65	45	13	32	8	1.73
47900897--47900993	39	2.5	39	89	0	158	8	28	21	41	1.82
47900898--47900993	20	4.9	20	89	3	142	7	29	21	41	1.80
47903196--47903236	19	2.2	18	86	4	55	34	17	0	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47905544--47905620	25	3.0	26	74	10	70	19	25	22	32	1.97
47905657--47905704	25	1.9	25	91	0	78	18	29	22	29	1.98
47905659--47905718	25	2.3	25	82	5	66	20	28	26	25	1.99
47909419--47909488	26	2.7	26	84	4	88	27	25	21	25	1.99
47915760--47915830	30	2.3	32	82	4	83	2	14	9	73	1.20
47915811--47915862	8	5.9	9	76	19	56	1	9	11	76	1.09
47916413--47916508	31	3.1	31	95	3	174	45	13	9	31	1.75
47919824--47919868	17	2.6	18	76	16	51	44	0	20	35	1.51
47920551--47920578	14	2.0	14	100	0	56	21	28	21	28	1.99
47925629--47925676	14	3.6	13	78	13	53	66	0	0	33	0.92
47926255--47926309	23	2.4	23	90	0	83	38	1	12	47	1.52
47929525--47929574	23	2.2	23	96	0	91	34	10	4	52	1.54
47930276--47930323	20	2.4	19	80	10	60	43	0	0	56	0.99
47943988--47944051	17	3.6	17	74	15	67	46	10	12	29	1.76
47944004--47944060	19	3.1	19	71	19	66	45	12	12	29	1.78
47943991--47944060	36	1.9	36	97	0	131	45	11	12	30	1.78
47946613--47946639	14	1.9	14	100	0	54	88	0	11	0	0.50
47946611--47946645	16	2.1	17	89	5	54	88	0	11	0	0.51
47946611--47946649	20	2.0	20	94	0	69	87	0	12	0	0.55
47961305--47961338	6	5.7	6	90	10	52	52	0	29	17	1.45
47970938--47971022	40	2.1	40	82	0	98	23	18	18	38	1.93
47970960--47971026	20	3.3	20	89	0	98	19	20	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47985956--47986039	42	2.0	42	95	0	150	51	10	5	32	1.61
48010703--48010930	40	5.7	40	92	0	366	22	26	19	31	1.98
48020027--48020292	103	2.6	104	88	0	408	19	20	29	30	1.97
48022286--48022349	18	3.5	17	75	10	56	42	6	17	34	1.74
48026179--48026220	22	1.9	22	90	9	68	23	30	7	38	1.82
48026190--48026289	51	2.0	51	86	4	139	26	26	3	45	1.68
48028605--48028637	17	2.0	17	88	5	50	30	27	24	18	1.98
48035963--48036044	26	3.4	25	68	31	72	25	2	28	43	1.67
48035943--48036043	46	2.2	46	96	3	186	24	1	29	43	1.65
48035943--48036017	20	3.4	21	67	32	59	25	1	30	42	1.63
48036999--48037105	19	5.8	18	69	18	60	55	3	1	39	1.29
48037200--48037246	23	2.0	23	91	0	76	42	8	6	42	1.60
48039212--48039262	25	2.0	25	85	7	68	56	1	0	41	1.10
48039219--48039293	30	2.5	29	85	8	89	52	4	1	42	1.28
48042604--48042655	28	1.9	28	84	7	72	34	19	25	21	1.96
48045030--48045081	20	2.6	20	93	0	95	21	26	0	51	1.47
48048484--48048558	37	2.0	38	97	2	143	32	16	26	25	1.96
48058598--48058649	25	2.1	24	89	3	77	15	21	25	38	1.92
48064029--48064112	25	3.4	25	88	0	132	33	22	20	23	1.97
48064030--48064140	25	4.4	25	86	0	114	34	21	19	24	1.97
48064030--48064137	50	2.2	50	86	0	144	33	22	20	24	1.97
48067890--48067955	26	2.5	26	85	7	89	34	19	25	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48068403--48068442	21	1.9	21	90	10	64	45	12	0	42	1.42
48068412--48068453	21	2.0	21	85	0	57	40	19	2	38	1.64
48073608--48073657	25	2.0	26	84	4	66	34	16	26	24	1.95
48073882--48073929	24	2.0	25	83	4	62	31	18	31	18	1.95
48075444--48075468	12	2.1	12	100	0	50	52	32	0	16	1.44
48081279--48081371	20	4.7	20	75	6	73	39	16	27	16	1.89
48081297--48081427	40	3.3	40	84	0	181	38	16	27	17	1.91
48081317--48081380	20	3.2	20	71	8	67	39	17	28	15	1.90
48082877--48082949	37	1.9	38	88	2	112	31	21	2	43	1.67
48082937--48082980	23	1.9	22	82	17	54	38	22	0	38	1.55
48083154--48083345	51	3.8	50	80	8	237	29	28	17	24	1.97
48083152--48083336	101	1.8	102	92	3	320	30	27	18	23	1.98
48083447--48083477	10	3.2	10	90	9	55	9	25	0	64	1.24
48085107--48085195	44	2.0	44	97	2	171	33	29	11	25	1.91
48085240--48085286	16	2.9	16	72	12	51	42	12	0	44	1.42
48085980--48086042	33	1.9	33	83	6	83	36	9	30	23	1.87
48085979--48086052	33	2.2	33	79	9	80	39	10	25	24	1.88
48089018--48089090	37	1.9	37	84	13	96	31	21	4	42	1.72
48089078--48089121	23	1.9	22	82	17	54	36	25	0	38	1.56
48089168--48089254	45	1.9	45	90	0	138	35	21	16	26	1.94
48089261--48089341	26	3.2	26	62	28	64	33	29	14	22	1.94
48089265--48089451	51	3.7	50	80	7	225	30	28	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48089263--48089447	101	1.8	101	91	3	309	30	28	17	22	1.97
48095610--48095643	16	2.1	16	88	0	50	41	2	20	35	1.68
48115314--48115345	15	2.1	15	94	0	55	28	6	3	62	1.34
48117005--48117047	22	2.0	22	85	0	59	6	13	27	51	1.67
48117148--48117261	41	2.8	41	86	6	167	22	20	20	36	1.95
48117582--48117636	21	2.6	21	88	0	74	3	47	20	29	1.67
48117714--48117747	15	2.3	15	100	0	68	11	26	14	47	1.79
48123255--48123529	27	10.4	24	83	6	97	33	2	17	46	1.62
48123291--48123737	27	16.6	27	86	2	515	33	2	14	49	1.58
48123317--48123758	36	12.5	36	80	9	405	33	2	14	49	1.56
48123307--48123737	63	6.8	63	86	3	539	33	2	14	49	1.56
48126570--48126609	20	2.0	20	95	0	71	55	17	5	22	1.61
48126908--48127068	84	1.9	85	87	3	236	32	21	17	28	1.96
48127253--48127499	90	2.9	82	80	11	291	42	25	1	29	1.64
48127371--48127424	7	7.9	7	80	12	58	38	46	0	14	1.45
48127390--48127621	102	2.3	103	81	8	276	39	29	1	29	1.67
48128248--48128976	115	6.4	115	85	3	893	28	27	20	22	1.99
48128248--48128976	229	3.2	226	85	5	907	28	27	20	22	1.99
48137932--48137973	22	1.9	22	90	0	66	11	21	26	40	1.88
48138036--48138222	43	4.3	43	86	1	241	31	32	16	19	1.94
48138489--48138579	43	2.1	43	85	2	121	43	10	10	34	1.75
48142753--48142815	20	3.0	20	77	6	72	47	3	0	49	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48142763--48142815	21	2.5	21	79	11	63	49	1	0	49	1.12
48142753--48142814	11	5.8	11	79	12	51	48	3	0	48	1.17
48143029--48143085	29	2.0	29	89	0	87	40	26	8	24	1.84
48144356--48144590	41	5.8	40	82	5	215	34	23	20	20	1.97
48144356--48144579	82	2.8	82	82	5	242	34	23	20	21	1.97
48144642--48144781	40	3.5	40	80	8	153	21	19	20	38	1.93
48154936--48154975	20	2.0	21	95	5	73	27	25	15	32	1.95
48157549--48157590	20	2.0	21	90	4	68	23	28	16	30	1.96
48161048--48161091	20	2.2	20	91	0	70	68	2	18	11	1.30
48161086--48161130	22	2.0	23	83	8	58	66	2	26	4	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208