genome.fa.s18.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  11  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4347873--4347956	28	3.0	28	91	0	132	16	26	19	38	1.92
4367120--4367212	18	5.2	18	90	0	150	31	13	23	31	1.94
4371950--4371976	10	2.7	10	100	0	54	25	22	29	22	1.99
4375785--4375839	24	2.3	23	75	12	58	41	0	5	52	1.24
4381766--4381795	15	2.0	15	93	0	51	53	0	10	36	1.35
4396649--4396708	28	2.2	27	82	8	68	40	1	0	58	1.08
4413935--4414016	26	3.2	26	63	16	71	17	20	29	32	1.95
4413950--4414029	25	3.2	25	63	16	65	16	25	27	31	1.96
4413921--4414213	50	5.7	51	88	3	342	19	28	24	26	1.99
4413961--4414041	25	3.2	25	63	16	67	18	27	27	27	1.98
4414308--4414339	13	2.5	13	94	0	55	56	12	0	31	1.37
4414551--4414608	30	1.9	30	85	0	80	31	22	3	43	1.70
4419333--4419535	46	4.3	48	88	7	265	35	14	21	28	1.92
4419267--4419535	98	2.7	98	93	0	457	34	14	22	28	1.93
4419499--4419644	37	4.0	37	93	1	242	36	16	21	24	1.94
4424568--4424649	26	3.2	26	63	16	71	17	20	29	32	1.95
4424583--4424662	25	3.2	25	63	16	65	16	25	27	31	1.96
4424554--4424846	50	5.7	51	88	3	342	19	28	24	26	1.99
4424594--4424674	25	3.2	25	63	16	67	18	27	27	27	1.98
4424941--4424972	13	2.5	13	94	0	55	56	12	0	31	1.37
4439737--4439837	25	4.1	25	77	10	109	34	17	27	19	1.95
4439744--4439837	49	1.9	48	85	6	127	34	17	28	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4439792--4439857	27	2.6	25	83	9	71	33	18	25	22	1.97
4439808--4439864	27	2.1	27	83	6	71	35	14	28	22	1.93
4439874--4439955	24	3.4	24	81	5	103	35	19	29	15	1.93
4445427--4445468	4	10.5	4	100	0	84	26	0	23	50	1.50
4450962--4451003	18	2.3	18	80	8	50	54	9	11	23	1.66
4452538--4452595	30	1.9	30	89	0	89	44	3	20	31	1.68
4452807--4452838	13	2.5	13	94	0	55	31	0	12	56	1.37
4452933--4453174	50	4.7	50	84	4	261	26	24	28	19	1.99
4452933--4453182	100	2.4	103	87	6	355	26	24	28	20	1.99
4455345--4455369	8	3.1	8	100	0	50	12	0	0	88	0.53
4461582--4461628	24	2.0	24	84	16	62	51	17	0	31	1.46
4472012--4472064	26	2.0	26	100	0	106	37	18	16	26	1.93
4475121--4475191	30	2.4	30	90	0	106	26	8	19	45	1.79
4475301--4475331	14	2.3	13	94	5	53	9	0	16	74	1.07
4480169--4480259	26	3.6	25	72	10	78	18	26	21	32	1.97
4483740--4483772	12	2.8	12	100	0	66	30	24	0	45	1.53
4496022--4496058	19	1.9	19	100	0	74	27	27	8	37	1.84
4506821--4506854	17	2.0	17	94	0	59	44	50	0	5	1.26
4511460--4511493	17	2.0	17	94	0	59	44	50	0	5	1.26
4524677--4524716	19	2.0	20	85	4	55	27	10	7	55	1.60
4531018--4531045	6	4.7	6	100	0	56	14	0	0	85	0.59
4533029--4533067	19	2.1	19	95	0	69	64	0	2	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4533343--4533380	19	2.1	19	90	5	60	42	0	0	57	0.98
4534612--4534674	24	2.6	24	80	7	65	61	3	1	33	1.21
4542615--4542852	50	4.8	50	87	5	306	24	22	31	20	1.98
4542624--4542845	97	2.2	100	85	6	292	25	22	32	19	1.98
4556438--4556481	22	2.0	23	86	4	63	45	6	0	47	1.29
4564856--4564897	22	1.9	22	100	0	84	42	19	14	23	1.87
4576428--4576490	33	1.9	33	93	0	108	41	14	12	31	1.83
4581678--4581814	42	3.5	42	74	17	166	30	28	18	21	1.97
4581720--4581941	33	6.3	33	68	24	134	34	27	18	18	1.95
4581677--4581850	75	2.3	75	96	0	321	32	28	18	20	1.97
4581751--4581941	103	1.9	102	91	3	312	33	27	19	18	1.96
4592374--4592438	32	2.0	32	100	0	130	52	9	6	32	1.58
4593017--4593135	46	2.7	46	92	3	190	32	14	23	29	1.94
4595026--4595113	43	2.0	43	100	0	176	43	18	15	22	1.88
4605772--4605957	100	1.9	101	96	1	347	31	14	18	36	1.91
4606164--4606196	17	1.9	17	100	0	66	66	0	15	18	1.25
4629492--4629539	26	1.9	25	84	16	64	45	0	2	52	1.12
4629567--4629639	28	2.7	27	68	19	62	41	2	1	54	1.23
4629714--4629755	15	2.7	16	82	14	52	45	0	2	52	1.13
4629705--4629746	15	2.9	15	82	10	52	47	0	0	52	1.00
4629811--4629891	24	3.4	23	77	16	85	50	6	0	43	1.27
4629884--4629918	16	2.2	16	94	0	61	54	11	0	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4629955--4629989	18	2.0	17	88	5	52	45	0	0	54	0.99
4630135--4630244	45	2.7	40	78	8	105	33	28	5	32	1.80
4643483--4643515	17	1.9	17	100	0	66	18	15	0	66	1.25
4643727--4643907	100	1.8	98	96	1	281	36	18	14	30	1.90
4654276--4654362	43	2.0	42	97	2	165	21	16	18	43	1.87
4656251--4656369	46	2.7	46	92	3	190	29	23	14	32	1.94
4656938--4657002	32	2.0	32	100	0	130	32	6	9	52	1.58
4667399--4667588	102	1.9	101	91	3	310	18	20	27	33	1.96
4667491--4667660	73	2.3	73	94	3	297	20	20	26	32	1.97
4667635--4667687	27	2.0	27	88	0	79	15	22	32	30	1.94
4680314--4680348	18	2.0	17	88	5	52	54	0	0	45	0.99
4680385--4680419	16	2.2	16	94	0	61	34	0	11	54	1.37
4680554--4680595	15	2.7	16	82	14	52	52	2	0	45	1.13
4680563--4680604	15	2.9	15	82	10	52	52	0	0	47	1.00
4680664--4680742	28	2.9	27	70	19	65	54	1	3	40	1.26
4680770--4680817	26	1.9	25	84	16	64	52	2	0	45	1.12
4680725--4680900	92	1.9	92	81	6	214	48	3	2	44	1.33
4683495--4683596	49	2.1	49	100	0	204	32	33	9	24	1.88
4685336--4685419	23	3.7	23	88	0	132	44	28	7	20	1.78
4685405--4685450	22	2.1	21	84	4	56	58	19	4	17	1.55
4686192--4686219	10	2.8	10	100	0	56	10	17	7	64	1.47
4687503--4687527	5	5.0	5	100	0	50	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4707996--4708071	33	2.3	32	82	6	89	32	19	22	25	1.97
4711734--4711767	16	2.1	16	100	0	68	26	20	11	41	1.87
4712594--4712627	16	2.1	16	94	0	59	23	20	8	47	1.78
4711380--4713107	863	2.0	859	94	0	3044	38	14	13	33	1.85
4733703--4733760	9	6.4	9	87	0	89	39	24	12	24	1.89
4733703--4733760	18	3.2	18	92	0	98	39	24	12	24	1.89
4733800--4733847	6	7.7	6	88	9	60	20	0	10	68	1.18
4733784--4733847	20	3.3	19	82	10	67	21	3	10	64	1.40
4736140--4736164	7	3.6	7	100	0	50	0	12	0	88	0.53
4764249--4764278	12	2.5	12	88	0	51	16	23	60	0	1.36
4773591--4773635	13	3.5	13	81	3	56	53	0	0	46	1.00
4778634--4778695	27	2.3	27	94	0	106	40	8	0	51	1.31
4779094--4779196	37	2.8	37	95	0	179	49	0	10	39	1.38
4779117--4779180	18	3.5	18	80	4	83	48	0	10	40	1.38
4779288--4779351	18	3.5	18	87	4	101	46	0	10	42	1.39
4779272--4779367	37	2.6	37	96	0	174	50	0	10	39	1.37
4779014--4779382	171	2.2	169	93	1	623	45	4	7	42	1.52
4779096--4779367	19	14.4	19	69	13	132	46	2	8	42	1.48
4781872--4781970	37	2.7	37	89	3	148	36	15	23	25	1.93
4782701--4782762	27	2.3	27	97	0	115	51	0	6	41	1.27
4796865--4796907	21	2.0	21	81	0	50	23	11	0	65	1.25
4797455--4797481	14	1.9	14	100	0	54	37	48	7	7	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4802586--4802617	14	2.3	14	100	0	64	31	46	15	6	1.71
4820248--4820403	43	3.7	43	84	1	181	28	26	15	30	1.96
4827756--4827989	21	11.3	21	73	8	167	17	20	16	44	1.86
4827756--4827989	42	5.7	42	75	6	226	17	20	16	44	1.86
4827774--4827952	61	2.9	61	88	0	277	18	21	15	44	1.86
4828047--4828270	112	2.0	112	100	0	448	35	5	16	42	1.70
4828278--4828322	21	2.2	20	84	4	54	37	8	31	22	1.85
4830394--4830496	42	2.4	42	75	4	100	14	23	16	45	1.84
4832061--4832309	50	4.8	51	84	4	279	20	28	24	26	1.99
4832060--4832309	100	2.4	104	87	6	348	20	28	24	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208