genome.fa.s18.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  30  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11894016--11894065	21	2.3	22	86	3	66	54	6	2	38	1.37
11897860--11897919	22	2.7	23	73	19	63	66	6	0	26	1.16
11897869--11897902	4	8.0	4	90	9	50	73	2	0	23	0.97
11904334--11904393	22	2.7	23	73	19	63	66	6	0	26	1.16
11904343--11904376	4	8.0	4	90	9	50	73	2	0	23	0.97
11912681--11912711	11	2.8	11	95	0	53	19	48	3	29	1.64
11913263--11913364	18	5.7	18	95	0	168	28	24	16	30	1.97
11914997--11915024	14	2.0	14	100	0	56	50	21	21	7	1.72
11917434--11917464	11	2.8	11	95	0	53	19	48	3	29	1.64
11927848--11927896	6	8.7	6	78	13	50	20	36	12	30	1.89
11927862--11927902	18	2.3	18	86	0	55	24	36	9	29	1.87
11932359--11933081	359	2.0	359	99	0	1419	33	20	13	33	1.90
11935074--11935122	20	2.5	20	83	12	57	59	0	2	38	1.09
11935292--11935338	14	3.3	14	80	16	60	55	4	0	40	1.19
11935466--11935530	19	3.3	20	80	18	66	24	7	1	66	1.27
11936441--11936502	13	4.7	13	83	2	61	41	14	0	43	1.45
11936774--11936854	40	2.0	40	90	0	126	43	16	2	38	1.61
11944050--11944127	40	1.9	39	82	10	95	23	25	26	24	2.00
11944924--11945085	83	2.0	83	90	2	254	37	13	2	46	1.57
11945004--11945179	96	1.8	96	87	4	266	39	15	1	43	1.54
11949670--11949736	35	1.9	35	93	0	116	43	8	20	26	1.82
11951945--11952009	25	2.6	25	78	7	60	72	0	23	4	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11957318--11957347	15	2.0	15	100	0	60	20	6	6	66	1.38
11963655--11963688	18	2.0	17	88	11	52	50	11	0	38	1.39
11966669--11966729	28	2.2	29	82	8	81	36	16	0	47	1.47
11971360--11971390	16	1.9	16	93	0	53	12	0	29	58	1.35
11971398--11971448	9	5.4	9	80	15	59	19	0	3	76	0.94
11971396--11971445	20	2.6	19	87	6	82	20	0	4	76	0.95
11971483--11971515	15	2.2	15	89	10	50	33	24	6	36	1.80
11973940--11974053	40	3.0	38	78	12	101	25	20	21	32	1.98
11973914--11974049	37	3.5	39	75	14	136	25	18	22	33	1.97
11976658--11976860	46	4.3	48	88	7	265	35	14	21	28	1.92
11976592--11976860	98	2.7	98	93	0	457	34	14	22	28	1.93
11976824--11976969	37	4.0	37	93	1	242	36	16	21	24	1.94
11982917--11982956	17	2.3	18	86	4	55	32	5	2	60	1.32
11983452--11983512	25	2.4	25	76	13	61	65	1	0	32	1.02
11990215--11990242	10	2.8	10	100	0	56	28	7	0	64	1.20
11990682--11990739	9	6.6	9	88	4	73	27	8	22	41	1.83
11990691--11990738	17	2.8	17	87	3	60	27	10	22	39	1.87
11990679--11990739	26	2.3	27	82	2	79	26	8	26	39	1.84
11991063--11991098	8	4.2	8	86	13	54	27	2	0	69	1.02
11991144--11991636	155	3.2	149	87	6	684	53	7	9	30	1.60
11991403--11991431	14	2.0	15	93	6	51	68	0	0	31	0.89
11994857--11994903	23	2.0	24	88	8	71	34	2	0	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11994870--11994918	23	2.1	24	85	11	66	38	2	0	59	1.09
11997725--11997803	13	6.5	13	75	16	71	44	1	7	46	1.40
11997722--11997789	23	3.0	23	93	0	118	45	1	5	47	1.36
12012743--12012813	29	2.4	29	79	9	72	49	9	7	33	1.63
12017634--12017711	39	2.1	38	84	15	101	55	7	10	26	1.60
12018601--12018625	5	5.0	5	100	0	50	80	0	0	20	0.72
12027549--12027643	31	3.1	30	76	11	88	37	11	11	38	1.78
12040763--12040836	29	2.5	29	82	4	85	25	14	13	45	1.82
12042224--12042272	24	2.0	24	84	7	64	20	10	2	67	1.30
12042442--12042471	8	3.6	8	95	4	51	30	36	0	33	1.58
12047094--12047207	58	2.0	58	92	3	194	22	17	21	38	1.93
12062456--12062519	33	2.0	32	90	3	101	39	25	9	26	1.86
12062736--12062848	41	2.8	41	98	0	217	26	22	22	29	1.99
12063449--12063595	37	4.0	37	92	1	235	25	22	15	36	1.93
12063558--12063774	52	4.2	52	84	8	293	27	23	14	35	1.93
12063557--12063780	98	2.3	98	94	0	394	28	23	14	34	1.93
12072893--12072956	33	2.0	32	90	3	101	39	25	9	26	1.86
12073171--12073326	41	3.8	41	97	0	285	26	22	21	29	1.99
12076142--12076216	22	3.3	23	74	17	75	49	1	2	46	1.24
12078756--12078784	6	4.8	6	100	0	58	68	0	0	31	0.89
12088776--12088818	20	2.1	20	82	4	50	23	2	2	72	1.08
12091467--12091498	2	16.0	2	93	0	55	0	46	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12091873--12091905	13	2.4	14	90	5	50	0	18	0	81	0.68
12098051--12098095	19	2.4	19	85	7	56	64	6	0	28	1.19
12099801--12099833	13	2.5	13	95	0	57	15	39	24	21	1.91
12108598--12108648	26	2.0	26	92	0	84	33	11	11	43	1.78
12126164--12126204	19	2.1	19	86	4	55	43	4	2	48	1.37
12126177--12126219	19	2.2	20	84	12	54	53	4	2	39	1.34
12126190--12126238	20	2.7	19	79	14	50	63	4	2	30	1.24
12126568--12126608	21	2.0	21	90	0	64	51	12	12	24	1.73
12128055--12128093	20	1.9	21	89	5	62	64	0	5	30	1.15
12134325--12134367	3	14.7	3	95	4	79	69	0	0	30	0.88
12137628--12137676	21	2.3	20	80	19	55	30	2	8	59	1.38
12138386--12138434	24	2.0	24	100	0	98	34	16	4	44	1.66
12139396--12139505	54	2.0	54	100	0	220	20	20	9	50	1.75
12144138--12144166	12	2.4	12	100	0	58	44	6	0	48	1.29
12147741--12147813	23	3.4	22	76	14	71	35	1	0	63	1.04
12147690--12147775	41	2.0	43	82	12	108	38	6	1	53	1.36
12147751--12147892	17	7.7	18	67	22	82	35	3	0	60	1.14
12147751--12147893	10	14.6	9	70	20	76	35	3	0	60	1.14
12147819--12147885	35	2.0	34	82	5	82	35	4	0	59	1.18
12147819--12147893	26	2.8	25	74	9	69	34	4	0	61	1.15
12147945--12148004	31	1.9	31	90	6	95	56	10	1	31	1.42
12151808--12151841	7	4.7	7	85	7	50	26	32	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12157038--12157139	50	2.0	50	92	3	170	44	24	6	24	1.78
12161382--12161658	137	2.0	139	90	2	434	47	14	13	24	1.80
12164497--12164543	25	2.0	24	83	8	60	46	2	0	51	1.13
12174350--12174378	3	9.7	3	100	0	58	31	0	0	68	0.89
12179406--12179435	16	1.9	15	93	6	51	36	0	10	53	1.35
12183385--12183429	18	2.4	18	85	3	63	64	4	0	31	1.13
12183615--12183666	25	2.0	26	85	3	70	55	1	3	38	1.29
12183615--12183669	26	2.1	26	83	6	67	54	1	3	40	1.28
12196294--12196356	31	2.0	31	96	0	117	28	38	4	28	1.77
12201834--12201875	4	10.5	4	80	10	50	76	0	23	0	0.79
12202753--12202888	40	3.5	39	75	7	141	24	16	26	33	1.96
12206387--12206452	30	2.2	31	86	8	91	39	3	9	48	1.50
12206816--12206863	19	2.3	21	79	10	55	58	2	0	39	1.10
12217601--12217640	21	1.9	21	84	0	53	7	17	2	72	1.19
12229807--12229858	22	2.3	22	77	9	52	50	5	1	42	1.37
12233112--12233258	64	2.3	64	96	0	276	36	8	12	41	1.75
12233890--12233921	15	2.1	15	94	0	55	53	0	15	31	1.43
12236911--12236954	21	2.1	21	100	0	88	9	15	31	43	1.79
12249403--12249502	44	2.3	44	94	0	173	44	7	30	19	1.77
12249434--12249503	22	3.2	22	61	15	54	47	4	30	18	1.68
12249645--12249690	23	2.0	23	100	0	92	47	4	13	34	1.62
12254344--12254446	13	7.8	13	67	4	71	34	7	23	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12254340--12254448	26	4.1	26	73	13	87	36	7	22	33	1.82
12254350--12254456	54	2.0	55	90	1	171	35	6	24	33	1.81
12276249--12276315	17	4.0	16	78	14	64	46	1	2	49	1.26
12276335--12276398	17	3.6	17	76	14	67	45	3	0	51	1.17
12276422--12276503	9	9.8	9	70	18	61	53	1	1	43	1.16
12276426--12276504	39	2.0	39	90	4	124	55	1	1	41	1.16
12276422--12276511	17	4.9	17	75	20	74	53	1	1	44	1.15
12276493--12276616	63	2.0	63	88	4	187	43	4	3	49	1.37
12276593--12276626	17	2.0	17	100	0	68	41	0	0	58	0.98
12276596--12276666	36	2.0	35	83	5	90	47	0	1	50	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208