genome.fa.s18.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  188  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58805740--58805854	57	1.9	59	84	10	155	24	23	23	28	1.99
58807449--58807473	8	3.1	8	100	0	50	76	0	0	24	0.80
58810408--58810451	19	2.4	18	81	7	52	45	0	0	54	0.99
58817442--58817479	18	2.1	18	100	0	76	23	10	15	50	1.75
58819390--58819532	42	3.4	42	81	5	164	28	11	37	22	1.88
58819504--58819628	42	3.0	42	66	12	103	28	9	39	23	1.86
58819656--58819759	42	2.5	42	88	0	154	29	11	34	24	1.90
58821855--58821881	13	2.1	13	100	0	54	62	7	14	14	1.51
58827081--58827174	9	10.4	9	83	8	111	26	9	21	42	1.83
58833465--58833529	27	2.4	27	94	0	112	24	24	13	36	1.92
58835956--58836021	13	5.1	13	80	7	80	30	4	25	39	1.76
58839321--58839345	12	2.1	12	100	0	50	16	8	16	60	1.58
58844918--58844960	20	2.2	20	84	15	56	34	0	0	65	0.93
58857764--58857835	33	2.2	33	94	0	126	41	15	30	12	1.84
58860743--58861328	294	2.0	294	96	0	1091	31	19	17	31	1.95
58862318--58862473	44	3.5	44	85	3	170	36	16	19	28	1.93
58862294--58862473	88	2.0	88	89	0	270	35	15	18	30	1.92
58862305--58862490	44	4.2	44	74	10	157	34	16	19	29	1.94
58862307--58862512	88	2.3	88	84	1	261	35	16	19	28	1.93
58862418--58862710	138	2.1	138	85	2	401	35	18	18	28	1.94
58862518--58862611	44	2.1	44	86	3	127	36	19	17	27	1.93
58865286--58865336	24	2.2	23	86	6	68	45	11	3	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58883179--58883531	162	2.2	162	91	1	573	26	18	17	36	1.94
58890085--58890149	32	2.0	32	93	0	112	43	12	9	35	1.74
58890131--58890175	22	2.0	24	86	8	67	42	11	6	40	1.67
58890712--58890787	29	2.6	29	78	2	89	35	0	2	61	1.10
58891674--58891810	40	3.4	39	82	5	159	39	23	19	17	1.92
58891837--58891951	41	2.8	42	86	4	180	20	22	29	27	1.98
58892395--58892434	7	5.9	7	82	5	55	15	0	52	32	1.43
58892503--58892591	7	12.7	7	79	0	88	11	0	50	38	1.38
58892503--58892598	14	6.9	14	80	9	97	12	0	50	37	1.41
58892485--58892606	7	17.4	7	72	9	79	15	0	46	37	1.46
58892482--58892606	21	5.9	21	76	4	90	15	0	47	37	1.45
58892523--58892614	14	6.6	14	82	5	87	18	0	47	33	1.49
58892573--58892613	21	2.0	21	85	0	55	24	0	46	29	1.53
58892912--58892943	7	4.6	7	92	0	55	0	0	43	56	0.99
58892905--58892974	14	5.1	13	82	5	59	8	0	47	44	1.34
58892905--58892957	21	2.5	20	79	11	61	7	0	43	49	1.31
58892945--58893007	21	3.0	21	77	9	74	20	1	46	31	1.61
58893419--58893450	5	6.4	5	100	0	64	62	0	0	37	0.95
58893616--58893679	22	3.0	21	79	6	65	21	1	7	68	1.23
58897217--58897441	43	5.3	43	91	0	335	24	19	30	24	1.98
58902676--58902764	41	2.2	41	93	0	151	44	19	5	30	1.73
58902680--58902751	22	3.4	22	63	18	53	44	19	5	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58903038--58903063	13	2.0	13	100	0	52	69	7	0	23	1.14
58909491--58909545	25	2.3	24	81	15	69	1	27	0	70	0.97
58909501--58909546	13	3.3	14	80	19	60	0	23	0	76	0.79
58912455--58912508	25	2.1	25	83	10	65	51	7	3	37	1.48
58912836--58912868	16	2.1	16	100	0	66	48	18	0	33	1.48
58913706--58913740	9	3.8	9	85	7	52	31	0	0	68	0.90
58913674--58913740	28	2.3	30	82	10	86	35	0	1	62	1.04
58925010--58925165	79	2.0	79	93	0	267	43	5	4	46	1.46
58933892--58934992	82	13.4	82	92	2	1471	22	20	24	32	1.98
58935067--58935594	50	10.6	50	66	8	187	26	20	21	31	1.98
58935010--58935591	199	2.9	199	90	0	878	26	20	22	31	1.98
58935013--58935598	100	5.9	99	81	5	653	26	20	22	31	1.98
58935598--58936140	44	12.5	45	77	6	473	31	26	16	25	1.96
58935598--58936025	125	3.3	132	87	6	626	30	27	16	25	1.97
58936304--58936344	16	2.7	15	85	7	64	31	2	21	43	1.66
58936647--58936838	109	1.8	103	85	8	269	46	10	17	25	1.79
58936812--58936899	45	1.9	47	83	4	117	50	7	14	27	1.71
58936804--58936904	45	2.3	43	80	10	112	52	7	13	25	1.68
58937177--58937219	12	3.8	11	81	12	52	4	11	2	81	0.93
58937175--58937217	22	2.0	22	90	9	70	4	11	2	81	0.93
58937678--58937716	14	2.9	13	85	14	53	0	0	20	79	0.73
58937677--58937710	7	4.7	7	89	7	50	0	0	20	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58938998--58939184	62	3.0	62	92	0	302	31	8	21	39	1.82
58943731--58943771	20	2.0	20	85	0	55	43	0	0	56	0.99
58943741--58943809	10	7.0	10	75	15	56	39	1	0	59	1.06
58944490--58944524	16	2.1	17	94	5	63	0	17	0	82	0.66
58944627--58944712	12	7.1	12	75	15	70	0	31	0	68	0.90
58944618--58944666	23	2.1	23	85	7	64	0	40	0	59	0.98
58944630--58944718	39	2.3	39	75	16	87	0	31	0	68	0.90
58944645--58944718	27	2.8	27	76	11	82	0	31	0	68	0.89
58944629--58944716	20	4.7	17	74	19	61	0	30	0	69	0.89
58944755--58944788	9	3.8	9	85	14	52	17	11	47	23	1.81
58945351--58946530	76	15.3	75	86	4	1432	32	20	17	28	1.96
58945355--58947244	154	12.0	153	80	9	1631	33	21	16	28	1.95
58946496--58946578	41	2.0	41	97	0	157	39	9	12	38	1.75
58946347--58946725	195	1.9	197	91	1	618	34	19	16	29	1.94
58946543--58947250	76	9.2	76	87	5	919	34	22	16	27	1.95
58950901--58950954	25	2.2	25	82	0	63	24	12	12	50	1.76
58956224--58956274	20	2.5	20	77	0	57	35	1	13	49	1.54
58956255--58956303	15	3.3	15	82	8	64	38	2	16	42	1.60
58956683--58956722	14	2.9	14	84	0	53	32	7	17	42	1.77
58956706--58956745	20	2.0	20	90	0	62	27	10	12	50	1.72
58956691--58956757	34	1.9	35	87	3	100	32	8	11	46	1.72
58961751--58961788	20	1.9	20	100	0	76	50	21	7	21	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58965299--58965393	27	3.5	27	86	0	127	38	17	16	26	1.91
58965430--58965476	24	1.9	25	82	4	60	17	8	25	48	1.74
58965673--58965875	32	6.4	32	83	2	230	22	18	19	39	1.92
58965673--58965860	96	2.0	96	85	0	259	22	18	19	39	1.93
58969628--58969683	25	2.3	25	87	6	80	67	3	0	28	1.07
58971164--58971451	128	2.2	130	76	10	286	28	22	20	28	1.98
58971260--58971842	217	2.7	217	90	0	880	28	23	19	27	1.99
58976327--58976373	23	2.0	23	91	0	76	42	4	10	42	1.59
58976484--58976523	13	3.2	13	85	3	55	70	0	30	0	0.88
58977634--58977734	45	2.2	45	87	0	139	17	17	21	42	1.89
58978824--58978866	17	2.5	17	92	0	68	44	13	6	34	1.72
58980681--58980732	27	2.0	26	84	3	68	0	30	13	55	1.38
58987186--58987228	20	2.2	20	95	0	77	30	16	9	44	1.79
58993743--58993792	21	2.5	19	78	9	55	60	2	2	36	1.20
58993993--58994027	18	1.9	18	88	0	52	65	0	0	34	0.93
58993965--58994045	22	4.2	19	72	20	60	59	0	4	35	1.19
58993886--58994042	51	3.1	51	70	9	131	54	2	7	35	1.41
58994266--58994320	3	18.3	3	85	7	76	63	3	1	30	1.22
59005553--59005620	27	2.6	27	81	9	70	25	23	0	51	1.48
59005573--59005621	18	2.6	18	87	6	62	22	24	0	53	1.47
59010715--59010851	27	5.1	27	76	0	85	32	24	6	36	1.81
59010735--59010838	54	1.9	54	86	3	147	32	22	6	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59010800--59010858	27	2.2	27	84	0	73	32	27	3	37	1.73
59013617--59013647	11	2.8	11	90	0	53	19	0	6	74	1.03
59020613--59020655	22	2.0	22	95	0	77	51	9	16	23	1.73
59023235--59023261	13	2.1	13	100	0	54	22	22	14	40	1.90
59024203--59024244	21	2.0	21	90	0	66	40	2	7	50	1.43
59024336--59024394	29	2.1	29	87	9	86	62	1	10	25	1.36
59027179--59027305	25	5.2	24	69	20	84	37	22	24	15	1.93
59038306--59038356	25	2.0	26	96	3	95	43	7	3	45	1.51
59041968--59042013	22	2.1	22	83	0	56	73	6	8	10	1.23
59046870--59047051	72	2.5	74	79	7	185	19	25	21	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208