genome.fa.s18.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  74  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26790101--26790149	25	1.9	25	87	4	71	38	16	4	40	1.67
26790263--26790315	24	2.2	24	89	0	79	1	24	32	41	1.66
26792364--26792420	29	2.0	29	85	0	78	59	0	0	40	0.97
26792472--26792522	22	2.3	22	93	0	84	39	0	33	27	1.57
26794151--26794196	24	1.9	24	86	8	67	36	0	4	58	1.18
26794263--26794439	66	2.9	59	85	11	255	44	9	5	40	1.59
26794293--26794461	66	2.5	66	95	1	293	46	8	4	40	1.55
26794505--26794534	5	6.0	5	100	0	60	0	40	60	0	0.97
26795006--26795042	19	2.1	19	85	14	53	78	0	21	0	0.75
26809340--26809379	20	2.0	21	85	5	55	20	0	25	55	1.44
26823874--26824020	59	2.5	59	80	2	179	42	13	16	27	1.85
26824411--26824459	20	2.4	20	77	12	55	53	2	0	44	1.12
26824913--26824977	25	2.5	26	82	9	89	33	0	6	60	1.22
26826172--26826209	19	2.0	20	89	5	60	65	0	5	28	1.14
26826224--26826273	12	4.5	11	88	11	75	66	0	10	24	1.22
26826216--26826273	23	2.6	22	84	12	75	65	0	10	24	1.23
26826172--26826273	10	9.9	10	79	12	75	64	0	7	27	1.21
26845066--26845444	125	3.0	125	92	1	632	34	17	19	27	1.95
26845066--26845436	127	2.9	127	93	0	629	34	17	19	28	1.95
26846036--26846132	51	1.9	51	87	4	142	45	2	26	25	1.65
26846096--26846149	22	2.5	22	80	19	69	46	1	29	22	1.62
26849713--26849763	24	2.1	23	85	7	66	41	0	3	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26853551--26853582	12	2.6	13	85	14	50	37	0	6	56	1.25
26857601--26857649	25	2.0	25	87	0	71	18	24	16	40	1.90
26857610--26857665	24	2.3	25	81	3	69	25	23	16	35	1.94
26859108--26859160	25	2.2	24	86	3	70	24	26	15	33	1.95
26859624--26859674	23	2.2	23	86	6	68	39	19	11	29	1.87
26865727--26865815	41	2.3	40	82	7	112	28	16	22	32	1.96
26867712--26867737	3	8.7	3	100	0	52	65	0	0	34	0.93
26868627--26868662	14	2.6	15	87	12	51	77	0	13	8	0.98
26869461--26869654	95	2.0	95	89	0	298	28	22	17	31	1.97
26869717--26869842	67	1.9	67	91	0	207	29	23	25	21	1.99
26869830--26870056	44	5.2	43	68	16	169	24	24	25	25	2.00
26869773--26870070	88	3.4	88	93	0	497	25	24	24	26	2.00
26871148--26871194	21	2.2	21	84	0	58	25	36	10	27	1.89
26871798--26872192	198	2.0	198	97	0	745	29	21	16	32	1.95
26872316--26872376	6	10.3	6	92	7	99	0	16	0	83	0.64
26872316--26872391	18	4.2	18	88	8	86	1	17	1	80	0.85
26872389--26872462	19	3.8	19	87	10	105	13	0	10	75	1.04
26872389--26872441	21	2.6	21	94	5	92	9	0	9	81	0.89
26872405--26872431	12	2.2	12	100	0	54	7	0	7	85	0.75
26872389--26872462	8	7.5	10	73	23	68	13	0	10	75	1.04
26873151--26873191	21	1.9	22	90	5	66	46	0	21	31	1.52
26876735--26876772	3	12.7	3	100	0	76	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26876862--26876890	10	2.7	11	89	10	51	58	0	0	41	0.98
26876952--26876984	12	2.6	13	90	4	50	69	6	0	24	1.10
26876961--26876989	15	1.9	15	100	0	58	65	6	0	27	1.18
26877665--26877700	14	2.6	15	87	12	51	77	0	13	8	0.98
26881201--26881235	18	1.9	18	88	0	52	37	20	17	25	1.94
26885883--26885917	17	2.1	17	88	0	52	40	5	0	54	1.24
26886107--26886163	27	2.2	27	84	9	75	50	0	3	45	1.18
26896575--26896681	53	2.0	54	87	1	153	45	5	5	42	1.51
26897038--26897085	24	2.0	24	83	0	60	68	6	0	25	1.12
26897294--26897323	15	2.1	14	93	6	51	53	10	6	30	1.60
26897864--26897889	3	8.7	3	100	0	52	69	0	30	0	0.89
26907757--26907849	37	2.5	38	82	1	98	13	10	40	34	1.80
26910068--26910098	3	10.3	3	100	0	62	32	0	0	67	0.91
26910232--26910261	13	2.3	13	94	0	51	33	0	3	63	1.11
26910737--26911281	110	5.0	110	92	1	848	30	16	18	34	1.93
26914062--26914134	32	2.4	29	81	6	83	41	4	10	43	1.59
26921272--26921357	30	2.9	30	74	6	86	66	10	2	20	1.33
26929691--26929777	45	1.9	45	81	9	106	27	3	6	62	1.37
26933519--26934052	276	1.9	276	90	1	838	34	18	12	33	1.89
26935751--26935829	40	2.0	40	87	0	113	20	29	17	32	1.95
26935774--26935829	20	2.8	19	78	7	67	19	32	17	30	1.95
26935752--26935845	40	2.3	40	83	3	109	23	27	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26935774--26935858	40	2.1	40	82	4	100	22	28	16	32	1.95
26936583--26936655	35	2.1	35	97	0	137	32	5	26	35	1.79
26937559--26937602	22	2.0	22	82	8	54	52	18	6	22	1.69
26940853--26940914	27	2.4	26	74	10	65	58	8	9	24	1.57
26949722--26949761	21	1.9	21	85	10	55	42	32	7	17	1.77
26950447--26950480	14	2.4	14	95	0	59	47	29	0	23	1.52
26964376--26964422	24	2.0	24	83	4	60	40	14	8	36	1.77
26967722--26967810	45	1.9	47	84	4	119	24	22	14	38	1.92
26967857--26967929	35	2.1	35	92	0	119	21	19	23	35	1.96
26969367--26969413	22	2.2	22	85	7	62	19	2	8	70	1.24
26969827--26969941	56	2.1	56	100	0	230	22	15	26	34	1.94
26975690--26975740	21	2.4	21	83	3	57	56	9	0	33	1.32
26976790--26976832	22	2.0	22	90	0	68	30	9	34	25	1.87
26980383--26980409	14	1.9	14	100	0	54	18	0	7	74	1.05
26982152--26982320	51	3.3	51	94	0	275	27	22	15	34	1.94
26988995--26989038	16	2.7	16	80	13	54	31	0	4	63	1.14
26991420--26991548	36	3.4	38	72	16	115	41	11	10	35	1.77
26991418--26991571	72	2.1	73	82	9	181	42	11	11	33	1.78
26991509--26991601	17	5.4	17	80	7	98	47	10	10	31	1.73
26991509--26991600	33	2.6	35	79	10	98	47	10	9	31	1.71
26991541--26991605	16	3.7	18	84	11	64	50	7	10	30	1.65
26991778--26991824	20	2.5	19	77	16	53	44	8	17	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26992184--26992269	7	11.9	7	77	11	75	0	19	0	80	0.72
26992180--26992268	15	6.1	14	79	14	90	0	20	0	79	0.73
26992181--26992268	28	3.2	27	80	13	92	0	20	0	79	0.73
26992183--26992272	22	4.0	22	78	8	76	0	20	0	80	0.72
26992223--26992272	23	2.2	22	92	3	82	0	20	0	80	0.72
26992402--26992466	30	2.2	29	83	10	78	1	6	23	69	1.20
26992587--26992611	3	8.3	3	100	0	50	0	32	0	68	0.90
26992966--26993067	30	3.4	29	74	12	91	45	1	22	30	1.64
26992981--26993075	30	3.2	30	83	3	120	45	3	22	29	1.68
26993077--26993109	13	2.4	14	90	5	50	27	0	3	69	1.03
26993354--26993463	55	2.0	55	92	3	186	36	18	16	29	1.92
26993442--26993476	14	2.5	14	90	0	52	60	2	17	20	1.49
26993562--26993809	85	2.8	86	81	10	279	36	18	18	27	1.94
26993562--26993816	91	2.9	88	82	9	297	36	18	18	27	1.93
26993722--26993755	16	2.1	16	88	0	50	64	5	11	17	1.45
26993774--26994386	191	3.2	192	95	0	1084	35	20	13	30	1.91
27002634--27002673	16	2.5	17	84	12	57	40	5	27	27	1.77
27006033--27006161	36	3.4	38	71	16	106	41	11	11	35	1.78
27006122--27006213	33	2.6	35	77	14	91	47	11	9	30	1.73
27006122--27006214	17	5.4	17	78	7	89	47	11	10	30	1.74
27006154--27006218	16	3.7	18	80	11	55	50	9	10	29	1.68
27006391--27006437	20	2.5	19	77	16	53	44	8	17	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27006794--27006886	7	13.1	7	80	8	100	0	20	0	79	0.73
27007006--27007046	15	2.6	16	84	7	57	0	14	17	68	1.22
27007193--27007233	13	3.1	14	86	6	50	0	19	0	80	0.71
27007199--27007233	10	3.5	10	92	0	52	0	22	0	77	0.78
27007198--27007235	14	2.8	14	88	4	51	0	23	0	76	0.79
27007301--27007350	10	5.2	10	80	7	59	0	30	0	70	0.88
27007305--27007347	19	2.3	19	88	11	63	0	30	0	69	0.88
27007614--27007708	30	3.2	30	81	3	120	46	3	22	28	1.67
27008824--27008891	33	2.1	33	88	5	102	52	19	17	10	1.72
27009220--27009274	13	4.2	13	73	19	51	50	0	1	47	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208