genome.fa.s18.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  178  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56342061--56342148	29	3.0	29	93	0	149	31	5	3	59	1.38
56342064--56342164	29	3.4	29	87	4	114	33	4	2	58	1.35
56342137--56342189	19	2.7	20	80	11	56	47	0	0	52	1.00
56342149--56342201	19	2.8	18	80	11	61	41	1	0	56	1.10
56342184--56342216	16	2.1	16	94	0	57	42	3	0	54	1.15
56342192--56342239	17	2.9	16	84	9	60	41	0	0	58	0.98
56342208--56342236	10	3.0	10	95	5	51	37	0	0	62	0.96
56345527--56345576	5	10.2	5	76	20	52	60	2	0	38	1.09
56352260--56352373	59	1.9	59	100	0	228	46	11	5	36	1.63
56352719--56353139	153	2.8	155	84	7	581	51	7	9	31	1.62
56354480--56354776	147	2.0	147	93	0	504	20	15	14	49	1.79
56355919--56356006	42	2.1	42	97	0	167	32	19	10	37	1.85
56364376--56364423	25	1.9	25	87	8	71	16	16	14	52	1.76
56369059--56369116	28	2.1	28	100	0	116	29	20	6	43	1.78
56369812--56369905	9	10.4	9	83	4	100	42	24	7	25	1.80
56369812--56369897	27	3.2	27	85	6	120	43	24	8	24	1.81
56374672--56374701	13	2.3	13	94	0	51	33	3	13	50	1.58
56374794--56375037	50	4.9	50	88	1	355	25	22	31	21	1.98
56381144--56381286	50	2.8	50	87	1	196	22	30	20	27	1.98
56386507--56386538	3	10.7	3	100	0	64	68	0	31	0	0.90
56387825--56387868	23	2.0	23	86	4	63	54	0	4	40	1.21
56391133--56391168	19	1.9	18	88	5	54	30	2	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56391132--56391180	18	2.7	18	84	12	64	28	2	0	69	1.00
56391143--56391206	30	2.1	32	85	11	89	29	4	0	65	1.13
56392589--56392648	16	3.8	16	75	16	61	26	20	18	35	1.95
56392716--56392781	24	2.8	23	81	4	78	31	18	15	34	1.92
56395631--56395981	125	2.8	123	90	2	524	27	14	21	35	1.93
56399104--56399180	37	2.1	36	83	7	93	46	1	9	42	1.43
56399229--56399272	23	1.9	23	85	0	61	27	4	11	56	1.53
56399263--56399360	21	4.6	21	78	13	110	30	0	26	42	1.55
56399261--56399360	43	2.3	43	89	3	148	30	0	27	43	1.55
56399346--56399832	23	21.9	23	79	12	534	29	0	21	49	1.50
56399399--56399458	18	3.1	18	74	21	57	30	0	20	50	1.49
56399306--56399832	89	5.9	88	80	12	460	29	0	21	48	1.50
56399610--56399669	24	2.3	27	72	22	63	21	0	28	50	1.49
56399663--56399705	17	2.4	18	84	7	61	34	0	13	51	1.42
56399317--56399836	244	2.1	240	83	9	626	29	0	21	48	1.50
56399728--56399770	18	2.4	17	77	11	50	30	0	16	53	1.43
56399361--56399807	41	10.2	41	75	16	314	29	0	21	49	1.49
56399282--56399827	41	12.4	41	68	18	223	29	0	21	48	1.50
56399863--56399903	9	4.8	9	88	5	59	56	12	2	29	1.49
56399863--56399899	18	2.1	17	95	5	65	59	10	2	27	1.44
56399894--56399945	25	2.2	23	81	15	70	44	15	0	40	1.46
56401466--56401711	50	4.8	50	81	5	253	20	29	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56401466--56401711	105	2.4	100	85	6	316	20	29	23	26	1.99
56401806--56401837	13	2.5	13	94	0	55	56	12	0	31	1.37
56402049--56402106	30	1.9	30	89	0	89	31	24	3	41	1.71
56402813--56402907	40	2.3	40	90	3	145	0	28	8	63	1.24
56402925--56402978	3	20.0	3	75	21	57	61	0	0	38	0.96
56402917--56402981	5	13.2	5	80	19	75	60	0	0	40	0.97
56402928--56402981	8	6.5	8	76	23	58	61	0	0	38	0.96
56402917--56402981	29	2.2	28	89	8	94	60	0	0	40	0.97
56402931--56402990	13	4.4	13	76	12	57	61	1	0	36	1.06
56402923--56402981	24	2.5	23	88	5	82	61	0	0	38	0.96
56403695--56403734	18	2.2	18	90	0	62	42	7	27	22	1.80
56404385--56404417	7	4.7	7	100	0	66	57	15	0	27	1.38
56405605--56405636	17	1.9	16	93	6	55	56	0	25	18	1.42
56408564--56408603	20	2.1	19	90	4	62	0	25	35	40	1.56
56408583--56408641	25	2.4	25	91	0	100	1	27	25	45	1.63
56410043--56410126	41	2.0	42	95	2	152	32	19	8	40	1.81
56417874--56417907	10	3.6	9	88	11	50	58	0	0	41	0.98
56417880--56417912	10	3.2	11	87	12	52	60	0	0	39	0.97
56421927--56421998	33	2.2	33	83	11	87	50	19	5	25	1.69
56425074--56425132	13	4.7	13	74	16	61	37	20	6	35	1.79
56425081--56425127	24	1.9	25	95	4	87	34	21	8	36	1.84
56427789--56427847	13	4.8	13	75	23	65	45	5	11	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56427817--56427865	8	6.5	8	75	13	50	51	4	8	36	1.51
56427806--56427860	21	2.6	21	100	0	110	47	5	9	38	1.58
56427817--56427872	29	1.9	29	85	7	78	50	3	8	37	1.51
56427806--56427884	21	3.7	22	88	8	69	49	5	8	36	1.56
56428104--56428280	35	5.1	35	88	1	230	22	21	15	40	1.91
56428112--56428280	69	2.4	69	87	1	230	23	21	15	39	1.92
56431080--56431124	20	2.1	23	88	12	69	13	8	8	68	1.38
56436003--56436204	105	1.9	105	83	2	262	28	23	15	32	1.95
56439749--56439799	17	3.1	17	73	21	63	66	0	3	29	1.09
56439726--56439819	32	3.0	31	75	18	104	59	0	2	38	1.09
56441293--56441372	29	2.7	29	82	9	90	31	3	11	53	1.54
56443239--56443302	23	2.8	23	73	0	65	31	17	29	21	1.96
56445514--56445756	50	4.8	50	92	0	396	20	30	23	26	1.98
56445851--56445881	13	2.4	13	94	0	53	54	12	0	32	1.38
56446092--56446151	30	2.0	30	83	3	77	31	23	1	43	1.64
56453091--56453332	50	4.8	50	92	1	387	20	30	22	26	1.98
56453427--56453457	13	2.4	13	94	0	53	54	12	0	32	1.38
56453669--56453726	30	1.9	30	85	0	80	31	22	3	43	1.70
56456976--56457002	6	4.5	6	100	0	54	70	14	0	14	1.17
56466681--56466767	45	2.0	44	88	6	131	36	2	6	54	1.40
56468767--56468798	16	2.0	16	100	0	64	31	6	25	37	1.81
56471767--56471800	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56476485--56476518	16	2.1	16	88	0	50	50	14	17	17	1.79
56479292--56479329	14	2.7	15	84	15	55	39	0	0	60	0.97
56482656--56482682	12	2.2	12	100	0	54	22	0	0	77	0.76
56491681--56492067	195	2.0	194	84	5	505	29	18	16	35	1.93
56494884--56494918	2	17.5	2	93	0	61	45	51	2	0	1.16
56498580--56498616	17	2.2	17	100	0	74	35	16	27	21	1.94
56505917--56505975	29	2.0	29	96	0	109	44	6	13	35	1.71
56514928--56514956	13	2.2	13	100	0	58	13	0	0	86	0.58
56516967--56517022	2	29.0	2	74	25	50	48	3	1	46	1.30
56516956--56517000	22	2.0	22	91	0	72	55	0	2	42	1.12
56517514--56517588	32	2.4	30	80	12	80	53	4	0	42	1.19
56521613--56521691	25	3.3	25	61	10	65	32	5	29	32	1.79
56521597--56521820	47	4.7	47	96	0	394	31	9	30	28	1.89
56523829--56523931	43	2.4	43	100	0	206	22	15	35	26	1.94
56523913--56523986	29	2.6	29	86	4	96	27	16	31	25	1.96
56524297--56524479	40	4.6	40	79	5	158	26	21	26	25	2.00
56527893--56528069	47	3.7	47	96	0	318	31	10	30	27	1.91
56531408--56531456	25	2.0	25	84	7	66	61	0	14	24	1.33
56534653--56534699	21	2.3	19	80	20	51	34	6	8	51	1.58
56534678--56535085	17	23.3	17	71	15	167	44	10	12	33	1.75
56534763--56534846	36	2.3	37	79	6	100	38	13	8	40	1.74
56534845--56535119	17	15.4	16	72	14	100	46	10	12	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56534865--56534946	21	4.0	21	83	9	91	45	9	7	37	1.65
56534930--56535085	35	4.5	32	74	13	114	46	9	14	29	1.77
56535070--56535118	18	2.6	19	77	6	55	46	16	12	24	1.81
56535114--56535164	18	2.9	17	77	8	57	47	7	9	35	1.66
56535650--56535706	26	2.2	26	87	0	78	10	29	40	19	1.85
56535813--56535856	19	2.3	19	84	4	52	4	13	11	70	1.31
56535813--56535866	22	2.6	21	82	11	58	3	12	12	70	1.30
56535822--56535869	21	2.4	19	83	13	60	2	8	12	77	1.08
56536418--56536534	30	3.9	29	77	11	94	44	3	22	29	1.69
56536433--56536534	30	3.4	30	84	2	134	44	3	22	29	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208