genome.fa.s18.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D05
Parameters: 2 7 7 80 10 50 1000
Length:  64368997

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   

This is table  133  of  208  ( 24943 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43587890--43587941	16	3.2	16	91	0	77	36	34	0	28	1.58
43599055--43599129	20	3.5	20	71	20	55	33	1	2	62	1.17
43610787--43610876	43	2.1	44	89	2	137	44	3	5	46	1.43
43613382--43613441	22	2.8	21	70	22	52	31	3	6	58	1.40
43615476--43615525	21	2.3	22	86	3	75	38	42	0	20	1.52
43620807--43620847	17	2.4	17	84	11	57	48	17	0	34	1.47
43625684--43625733	14	3.7	14	76	17	52	56	0	4	40	1.18
43626289--43626425	9	13.9	10	67	21	58	35	2	0	62	1.11
43626282--43626422	30	5.2	28	70	22	104	32	2	0	64	1.08
43626276--43626384	41	2.7	40	87	6	159	31	3	0	65	1.10
43626276--43626428	79	1.9	79	84	7	204	33	2	0	63	1.08
43626340--43626422	30	2.9	29	91	5	132	32	2	0	65	1.06
43626362--43626415	17	3.4	17	70	19	62	33	1	0	64	1.04
43626276--43626402	39	3.2	38	79	9	139	29	3	0	66	1.07
43636780--43636818	20	2.0	20	89	0	60	43	15	15	25	1.86
43641021--43641078	16	3.8	16	80	19	70	50	1	3	44	1.29
43641036--43641078	17	2.4	17	84	7	50	51	2	2	44	1.27
43644429--43644478	18	2.8	18	84	0	64	18	2	36	44	1.61
43645385--43645505	61	2.0	61	81	0	143	30	14	9	45	1.76
43645856--43645880	12	2.1	12	100	0	50	68	8	8	16	1.38
43654951--43654984	17	2.0	17	88	11	52	29	17	0	52	1.45
43660826--43660887	23	2.7	22	87	7	63	1	27	0	70	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43660861--43660942	16	5.0	16	72	21	62	3	23	0	73	0.99
43667634--43667666	15	2.1	16	88	5	50	57	6	0	36	1.23
43667914--43667958	9	5.1	9	89	2	56	33	4	2	60	1.29
43667943--43668677	370	2.0	370	97	0	1389	37	17	17	27	1.92
43671514--43671546	13	2.5	13	95	0	57	36	18	15	30	1.91
43688102--43688142	18	2.3	18	87	8	57	17	43	24	14	1.86
43689497--43689571	20	4.0	18	71	20	64	45	1	4	49	1.29
43690048--43690079	6	5.2	6	92	7	55	15	18	0	65	1.27
43690048--43690079	13	2.6	12	90	9	55	15	18	0	65	1.27
43703196--43703383	61	3.1	61	69	14	190	43	1	6	48	1.39
43703244--43703278	18	2.0	17	88	5	52	45	0	0	54	0.99
43703149--43703418	120	2.2	120	96	1	497	44	1	5	48	1.38
43703364--43703398	18	2.0	17	88	5	52	45	0	0	54	0.99
43703632--43703680	16	3.1	16	90	0	80	22	32	6	38	1.79
43705094--43705122	13	2.2	13	100	0	58	31	6	34	27	1.83
43710580--43710635	30	1.9	28	82	13	69	60	10	16	12	1.58
43719072--43719109	10	3.8	10	83	13	51	28	31	18	21	1.97
43719071--43719108	20	1.9	20	94	0	67	28	34	18	18	1.95
43720863--43720939	25	2.8	25	84	13	82	74	2	7	15	1.16
43720852--43720941	41	2.2	40	88	7	128	75	3	6	14	1.13
43720888--43720939	13	4.1	12	80	9	59	75	1	7	15	1.12
43720904--43720957	13	3.7	14	78	14	56	74	3	12	9	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43721885--43721926	18	2.3	18	87	0	57	71	4	16	7	1.26
43723621--43723658	10	3.8	10	83	13	51	28	31	18	21	1.97
43723620--43723657	20	1.9	20	94	0	67	28	34	18	18	1.95
43725436--43725483	20	2.3	21	79	13	55	29	4	18	47	1.67
43731542--43731580	13	3.1	12	92	7	60	64	2	2	30	1.21
43731566--43731599	8	4.0	8	88	11	50	58	0	2	38	1.13
43733610--43733653	22	2.0	23	86	4	63	65	2	0	31	1.05
43734224--43734262	2	19.5	2	100	0	78	48	0	0	51	1.00
43740172--43740216	2	22.5	2	100	0	90	0	0	48	51	1.00
43741424--43742608	394	3.0	394	95	0	2093	25	21	13	38	1.91
43744273--43744307	4	8.8	4	93	0	61	74	2	0	22	0.95
43745393--43745422	15	2.0	15	93	0	51	0	13	23	63	1.29
43745892--43746093	89	2.3	89	83	4	255	27	24	19	28	1.98
43745930--43746180	133	1.9	132	81	0	304	28	22	18	30	1.97
43745791--43746190	44	9.1	44	73	2	255	28	21	18	31	1.97
43749581--43749660	35	2.3	35	83	8	94	45	0	6	48	1.27
43749608--43749668	24	2.5	23	80	15	61	45	0	4	49	1.23
43750970--43750995	3	8.7	3	100	0	52	34	0	0	65	0.93
43758659--43758705	20	2.3	20	85	0	67	29	34	10	25	1.90
43764508--43764553	21	2.2	21	96	3	85	30	4	30	34	1.77
43764659--43764935	88	3.2	88	88	1	430	35	15	15	33	1.89
43774660--43774735	37	2.1	37	100	0	152	44	5	21	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43781775--43782765	497	2.0	488	85	6	1340	29	22	15	31	1.95
43784112--43784146	16	2.1	17	89	5	54	17	8	8	65	1.44
43796425--43796457	15	2.1	16	88	5	50	48	0	3	48	1.17
43796365--43796575	107	2.0	108	96	0	388	43	1	6	48	1.36
43796532--43796573	15	2.7	16	82	14	52	45	0	2	52	1.13
43796523--43796564	15	2.9	15	82	10	52	47	0	0	52	1.00
43796699--43796808	45	2.6	44	81	8	131	31	28	5	34	1.80
43796789--43796840	16	3.2	16	91	0	77	34	34	0	30	1.58
43797215--43797299	42	2.0	42	100	0	170	32	22	18	25	1.97
43798872--43798915	19	2.2	19	84	8	52	43	0	2	54	1.12
43799277--43799328	25	2.1	25	88	0	77	26	7	17	48	1.74
43800088--43800149	13	4.8	13	77	0	61	29	8	25	37	1.85
43802202--43802376	72	2.4	73	83	6	230	53	12	7	26	1.64
43802798--43802845	18	2.7	18	90	0	78	39	10	12	37	1.77
43804454--43804514	24	2.5	24	97	0	113	45	3	44	6	1.46
43806934--43807016	19	4.1	19	75	17	76	53	22	22	1	1.54
43806944--43807060	25	4.9	25	79	12	147	51	23	22	2	1.61
43806934--43807041	44	2.5	44	90	0	171	52	24	22	0	1.53
43806944--43807083	69	2.0	69	87	0	199	51	23	22	2	1.61
43821345--43821402	24	2.5	23	81	16	66	62	0	5	32	1.18
43821673--43821830	49	3.2	48	94	2	264	31	7	30	30	1.85
43821948--43822026	37	2.1	37	88	0	113	24	17	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43823890--43824035	43	3.4	43	98	0	274	22	15	35	26	1.94
43824017--43824090	29	2.6	29	86	4	96	25	14	32	27	1.95
43824401--43824741	40	8.5	40	85	2	366	24	21	28	26	1.99
43827898--43827955	24	2.5	23	81	16	66	62	0	5	32	1.18
43828226--43828383	49	3.2	48	92	2	255	31	8	30	29	1.86
43828501--43828579	37	2.1	37	90	0	122	24	18	31	25	1.98
43832947--43833110	43	3.9	42	77	6	159	29	26	15	28	1.96
43832947--43833110	85	1.9	85	81	4	197	29	26	15	28	1.96
43839445--43839563	58	2.1	58	85	3	159	36	21	13	28	1.91
43839356--43839663	29	10.9	28	72	13	143	37	21	14	25	1.92
43850936--43851120	79	2.3	82	83	7	229	24	27	22	24	2.00
43850917--43851120	40	5.1	40	81	8	229	24	27	22	25	2.00
43858833--43858936	39	2.6	39	89	1	145	25	26	20	26	1.99
43858833--43858989	40	3.9	39	81	7	156	25	26	21	26	2.00
43865182--43865247	27	2.4	27	75	5	71	34	16	28	19	1.94
43867207--43867256	16	3.1	16	76	20	50	24	2	0	74	0.93
43867217--43867259	18	2.3	18	81	14	52	25	2	0	72	0.97
43876690--43876714	12	2.1	12	100	0	50	56	0	8	36	1.29
43877350--43877455	41	2.7	40	82	5	119	25	19	24	30	1.98
43877351--43877488	41	3.5	40	76	10	115	26	19	24	29	1.98
43880759--43880798	16	2.6	15	84	7	53	70	0	5	25	1.08
43887642--43887695	17	3.2	17	76	5	56	18	3	7	70	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43889156--43889291	51	2.7	50	83	1	164	24	18	25	32	1.97
43893369--43893405	17	2.2	17	100	0	74	21	29	13	35	1.92
43896814--43896846	14	2.5	14	90	9	52	24	9	27	39	1.85
43896764--43896984	51	4.4	50	78	3	219	25	16	26	31	1.96
43900309--43900353	23	2.0	23	95	0	81	31	8	20	40	1.83
43902293--43902345	3	17.7	3	80	0	61	32	7	1	58	1.37
43902293--43902354	12	5.2	12	80	1	63	30	9	1	58	1.40
43907279--43907351	6	11.8	6	78	16	69	80	1	17	0	0.78
43907634--43908017	97	4.0	97	92	0	626	27	16	8	47	1.76
43909104--43909184	41	2.0	41	82	0	99	27	22	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208